BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487493
Length=1421
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06800.1 | Symbols: | myb-like HTH transcriptional regulato... 1899 0.0
> AT5G06800.1 | Symbols: | myb-like HTH transcriptional regulator
family protein | chr5:2103162-2105898 FORWARD LENGTH=1558
Length=1558
Score = 1899 bits (1028), Expect = 0.0
Identities = 1310/1434 (91%), Gaps = 68/1434 (5%)
Strand=Plus/Plus
Query 43 tttttttggttgaatcgaatc--tg-ttt-tttttcaacttcaaactttttttttCCCTC 98
|||||||| || ||||||||| || ||| |||||||||||| ||||||| ||||||||
Sbjct 85 TTTTTTTGATT-AATCGAATCTTTGTTTTCTTTTTCAACTTCGAACTTTTGATTTCCCTC 143
Query 99 CGTTCAATATATCATTGAACTTACAACAAAATCATATGTTTCTGTGGCAATTTGTGTCTT 158
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 144 CGTTCAATATATCATTGAACTT--AAC--AATCATATGTTTCTGTGGCAATTTGTGTCTT 199
Query 159 TCATGCTTGTTATTTGATGGATAACATCAACTTTGAATTCTCAAACGCTTCACAAGAAAG 218
|| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 200 TCTTGCTTGTTATATGATGGATAACATCAACTTTGAATTCTCAAACGCTTCACAAGGAAG 259
Query 219 CCGGCTACAG-T-----------CG---CAGCCGTTTAATTTACAAGATTTGAATATGAT 263
|||||||||| | || |||||||||||||||||||| |||||||||||
Sbjct 260 CCGGCTACAGTTGCAGCAACAACCGCCCCAGCCGTTTAATTTACAAGACTTGAATATGAT 319
Query 264 TCAATACAATCAACCACCATCTCCTTGGACTACCGAAACCTTCTCTGGTCTTTCTCCGTA 323
|||||||||||||||| |||||||||||||||| || |||||||||||||| |||||||
Sbjct 320 TCAATACAATCAACCATCATCTCCTTGGACTACGGAGACCTTCTCTGGTCTAACTCCGTA 379
Query 324 CGATTGCACTGCCAATCAATCTTTTCCCGTACAATGTTCATCTTCAAAACCCTACCCTTC 383
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 CGATTGCACAGCCAATCAATCTTTTCCCGTACAATGTTCATCTTCAAAACCCTACCCTTC 439
Query 384 CTCGTTTCATCCGTACCATCATCAATCTTCTGATCCTCCATCATTAGACCAATCTGTATC 443
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 440 CTCGTTTCATCCGTACCATCATCAATCTTCTGATTCTCCATCATTAGACCAATCTGTATC 499
Query 444 GATGCTTCCTATGCAGCCTCTTCCGGATCAATATTTGAAACCATTCTATCAAAGATCATG 503
|||| ||||||||||||||||||||||||||||| |||| ||||| ||||||||||| ||
Sbjct 500 GATGATTCCTATGCAGCCTCTTCCGGATCAATATATGAAGCCATTATATCAAAGATCTTG 559
Query 504 CGCGAATGATTTCGCCGCAACAAATGCATCATCAGCCTCATACTCGCTTTCTTTTGAAGC 563
| |||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 560 CTCGAACGATTTTGCCGCAACAAATGCTTCATCAGCCTCTTACTCGCTTTCTTTTGAAGC 619
Query 564 AAATCATGATCCACAAGAACTATGCAGGAGGACCTATAGTAGTTCTAATGTAACACATCT 623
|| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 620 AAGTCATGATCCACAAGAACTATGCAGAAGGACCTATAGTAATTCTAATGTAACACATCT 679
Query 624 GAATTT--C-TCAT--CATTA-CAACCTAAACAAAATCATCCAAGATTTTCTTCTCCTCC 677
||||| | |||| || | ||||||||||| | ||||||||||||||||||||||||
Sbjct 680 TAATTTCACATCATCACAACATCAACCTAAACAGAGTCATCCAAGATTTTCTTCTCCTCC 739
Query 678 TTCATTCTCAACCCATGGAGGGTCGGTGGCTCCAAACTGTGTGAACAAGACACGGATAAG 737
||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 740 TTCATTCTCAATCCATGGAGGGTCTATGGCTCCTAACTGTGTGAACAAGACACGGATAAG 799
Query 738 ATGGACTCAAGATCTTCATGAGAAGTTTGTGGAGTGCGTTAATCG-CATTGGTGGTGCTG 796
||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||
Sbjct 800 ATGGACTCAAGATCTTCATGAGAAGTTTGTGGAGTGCGTTAATCGTC-TTGGTGGCGCTG 858
Query 797 ATAAGGCAACGCCCAAGGCGATATTGAAGTTGATGGATTCTGATGGACTCACAATATTTC 856
||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 859 ATAAGGCGACGCCCAAGGCGATATTGAAGCGGATGGATTCTGATGGACTCACAATATTTC 918
Query 857 ATGTTAAAAGCCACTTACAGAAGTATAGAATTGCGAAATACATGCCCGAGTCTCAAGAAG 916
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 919 ACGTTAAAAGCCACTTACAGAAGTATAGAATTGCGAAATACATGCCTGAGTCTCAAGAAG 978
Query 917 GCAAGTTTGAGAAAAGAGCTTGTGCGAAAGAGCTGTCTCAGCTTGACACAAGAACTGGAG 976
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 979 GCAAGTTTGAGAAAAGAGCTTGTGCAAAAGAGCTGTCTCAGCTTGACACAAGAACTGGAG 1038
Query 977 TGCAAATTAAAGAGGCACTTCAGCTTCAACTAGATGTTCAGAGGCATCTTCATGAACAAC 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 TGCAAATTAAAGAGGCACTTCAGCTTCAACTAGATGTTCAGAGGCATCTTCATGAACAAC 1098
Query 1037 TAGAGATTCAACGAAACCTACAACTAAGAATCGAAGAACAAGGGAAACAACTGAAAATGA 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 TAGAGATTCAACGAAACCTACAACTAAGAATCGAAGAACAAGGGAAACAACTGAAAATGA 1158
Query 1097 TGATGGAACAACAACAAAAAA-CGAAAGAGAGTCTTCT-AA-A-GCCACCAGACGCTGAA 1152
||||||||||||||||||||| | |||||||||||||| || | || |||||||||||||
Sbjct 1159 TGATGGAACAACAACAAAAAAAC-AAAGAGAGTCTTCTGAAGAAGCTACCAGACGCTGAA 1217
Query 1153 GCATCATTGTGTCTTCTCGCTTCCGATG---ACTCTCCTCCTTCGCCTTTCTTGGTACAA 1209
|||||||||| |||||||| | || || ||||||||||||||||||||||||||||
Sbjct 1218 GCATCATTGTCTCTTCTCGATCCCCATATTCACTCTCCTCCTTCGCCTTTCTTGGTACAC 1277
Query 1210 GACACTGAAGCCTTGATGCTAACAAGTTATGAAGACACTCAACTCCAGTC-A--AA--G- 1263
||| |||||||| ||||||||||||||||||||||||||||||||||||| | || |
Sbjct 1278 GACGCTGAAGCCCTGATGCTAACAAGTTATGAAGACACTCAACTCCAGTCCACCAAAAGT 1337
Query 1264 --A----T-A-AG-T--T--GAA-AAAT-AGAAAAGGCCTAAAGCATGTTTCTACTCTAT 1308
| | | || | | | |||| |||||||||||||||||||||||||||||||
Sbjct 1338 TGAAAAATGAGAGATACTCTGGCTAAATTAGAAAAGGCCTAAAGCATGTTTCTACTCTAT 1397
Query 1309 TCAAAGTGGTGTAAAGTTATAAGAGTCGCGACAAGAGAATGTCCAAAGTGCTGCTACACA 1368
|||||||||| ||||||||||||||||||||||||| | ||||||||||||| |||||
Sbjct 1398 TCAAAGTGGTATAAAGTTATAAGAGTCGCGACAAGA-A-TGTCCAAAGTGCT---ACACA 1452
Query 1369 CACTAACACTTGAGAA-CAGAATCAGGTACTAAATGTGAGCAAGTGGTGTGTGA 1421
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1453 CACTAACACTTG-GAAACAGAATCAGGTACTAAATGTGAGCAAGTGGTGTGTGA 1505
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70029760275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5