BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487496
Length=1827
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06830.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 2902 0.0
> AT5G06830.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF773 (InterPro:IPR008491);
Has 365 Blast hits to 359 proteins in 109 species: Archae
- 9; Bacteria - 13; Metazoa - 209; Fungi - 7; Plants -
47; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).
| chr5:2116783-2119629 REVERSE LENGTH=1819
Length=1819
Score = 2902 bits (1571), Expect = 0.0
Identities = 1747/1831 (95%), Gaps = 16/1831 (1%)
Strand=Plus/Plus
Query 1 AAAACGTTAAACTGAGAGAGACTCTTCGGAGAT--AATTTCCCCAGAAAGCGTCTAAGGT 58
|||||||||||||| | |||| |||||||||| ||||| |||||||||||| |||||
Sbjct 1 AAAACGTTAAACTGTGTGAGA--CTTCGGAGATAAAATTT-CCCAGAAAGCGTGAAAGGT 57
Query 59 TTCCCGTAAAATTaaaaaaaTGCCGACACAAGACGATGTTCAAAATCTTCCAATCGACAT 118
| ||| || ||||||||| ||||||| ||||||||||||||||||||||| ||
Sbjct 58 TAACCG------GAAGAAAATGCCGTCACAAGATGATGTTCAAAATCTTCCAATCGATAT 111
Query 119 CACCTTCTCTCGTCTCGGAGAATGGTTGGTGGATCGGAAGAGAATTCCGGCGGATTGGAG 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 112 CACCTTCTCTCGTCTCGGAGAATGGTTGGTGGATCGGAAGAGAATTCCGGCGGATTGGAG 171
Query 179 GAAGAGGGTTGCTGCGATCAGAGTCAAAATCTTAAAAGAGTTTTCTTCTTTGCCTAAAGA 238
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 172 GAAGAGGGTTGCTGTGATCAGAGTCAAAATCTTAAAAGAGTTCTCTTCTTTGCCTAAAGA 231
Query 239 GATCGATCCATTCTTTCAAACCCTAGATCCTGAAGTGATCGGTTACTTGGAGGTGAAAAA 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 232 GATCGATCCATTCTTTCAAACCCTAGATCCTGAAGTGATCGGTTACTTGGAGGTCAAAAA 291
Query 299 GATATATGAGATTCTCCTGAAGACAACTCCGGAAAGCCGTAACATCTTTGGTCGGCTTTC 358
| | ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 292 GGTGTATGAGATTCTCCTGAAGACAACTCCGGAAAGCCGCAACATCTTTGGTCGACTTTC 351
Query 359 GGGTGCTTCTGGAGTTTGGGAAGCTATTGTTCGTGCGTTTGAAAAAGATCACATTTATCT 418
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 352 GGGTGCTTCTGGTGTTTGGGAAGCAATTGTTCGTGCGTTTGAAAAAGATCACATTTATCT 411
Query 419 TGGGGAGGCAGCTCAGATTATAATTCAGAATGTCAATTACGAAATCCCTTACCTGAAAAA 478
|||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||
Sbjct 412 TGGGGAGGCAGCTCAGATAATAATTCAGAATGTTAATTACGAAATCCCTTATCTGAAAAA 471
Query 479 GCAAGTGCAAAAGGTTCAGCAACAAATGGCCGAACTTGATCGTAAAGAAGCTGATATCAA 538
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 472 GCAAGTGCAAAAGGTTCAGCAACAAATGACAGAACTTGATCGTAAAGAAGCTGATATCAA 531
Query 539 AAGGAGCGTTGCACTCTCAGCAACAAAATACGAGGATGCTTGCCGAGAGCTTGGATTGCA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 AAGGAGCGTTGCACTCTCAGCAACAAAATACGAGGATGCTTGCCGAGAGCTTGGATTGCA 591
Query 599 GGGAAACAATGTGAGGCGTGAGCTTTTGGAGACTGCGAGTTCGCTTCCTAGTACCTTTAG 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 GGGAAACAATGTGAGGCGTGAGCTTTTGGAGACTGCGAGTTCGCTTCCTAGTACCTTTAG 651
Query 659 TAAGATTCTGGAAGTTATCAACAGTGACTCAGTAACAGGGGCTATGGAGTACTACTCCGC 718
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 652 CAAGATTCTGGAAGTTATCAACAGTGACTCAGTAACAGGGGCAATGGAGTACTACTCTGC 711
Query 719 CTATGTTAAAGATGTTCATACTGAGAAAGATAAGCCTTTGAGGATTGTTTTACAAAACTT 778
||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 712 CTATGTTCAAGATGTTCATACTGAGAAAGATAAGCCTTTGAGGATTGTCTTACAAAACCT 771
Query 779 GAAAGGCATTCGTGAAAACCCTCCATCATTAAGCGTTTTGGGGGGCTCTGACGCTCTTGA 838
|||| ||||||||||||||||||||||||||||||||| |||| |||||| | ||| ||
Sbjct 772 GAAATACATTCGTGAAAACCCTCCATCATTAAGCGTTTTTGGGGACTCTGAAGGTCTCGA 831
Query 839 TGCTGATAATATTCAGTCATCTGAGAATGCAAATGGTACAGATGCGGCTGCAGACAGCAT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 832 TGCTGATAATATTCAGTCATCTGAGAATGCAAATGGTACAGATGCGGCTGCAGACAGCAT 891
Query 899 TGATTGGGATATTACGCTTGATACTGCTGAGATAGATTGGGATGTTAGTATGGTAGAAGA 958
|||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 892 TGATTGGGATATTACGGTTGAGACTCCTGAGATAGATTGGGATGTTAGTATGGTAGAAGA 951
Query 959 AGTTGATAGTGTAAATGATCTAGGTTCATATGAAATTGTCAATGCCAGTGATATTCCTGA 1018
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 952 AGTTGATAGTGGAAATGATCTAGGTTCATATGAAATTGTCAATGCCAGCGATATTCCTGA 1011
Query 1019 GAGTTCACCATTTAAAGTGGAAGAAAGCCAAGGCCCTGAGGTTGATGTTTCTGAGATATC 1078
|| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct 1012 GAATTCTCCATTTAAAGTGGAAGAAAGCCAAGGCCTTGAGGTTGATGTTTCTGAGATTTC 1071
Query 1079 TTGGGATGTAAGTGTTGAAACACCTCAGGTAGAAGAAATAGGTGATTCAGCTTTGCTAGA 1138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 TTGGGATGTAAGTGTTGAAACACCTCAGGTAGAAGAAATAGGTGATTCAGCTTTGCTAGA 1131
Query 1139 ATCAAATCAGACACCGTTGGCAGATTCTACAACCCAAGTCTTAGGAAGTGGAGGAGAGAG 1198
|||||| ||||||| |||| ||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1132 ATCAAACCAGACACAGTTGACAGATTCTACAACTCAAGTCTTAGGGAGTGGAGGAGAGAG 1191
Query 1199 GAGCCAGCTGTTGGAGACAGAATATAGGAATAAGATCCTTGATGATTTGTATGAGGTCAA 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1192 GAGCCAGCTGTTGGAGACAGAATATAGGAATAAGATCCTTGATGATTTGTATGAGGTCAA 1251
Query 1259 GGCATTTTTAAACCAGCGTTTGATAGAACTGAGAAATGAAGATACTCTGTCCTTGCAACA 1318
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1252 GGCATTTTTGAACCAGCGTTTGATAGAACTGAGAAATGAAGATACGCTGTCCTTGCAACA 1311
Query 1319 CCACGTGCAAGCAGT-TGCCCCCATGGTTCTTCAGCAGTATTCTCCCGAAACCATAGAGC 1377
||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1312 CCACGTGCAAGCAGTCT-CCCCCATGGTTCTTCAGCAGTATTCTCCTGAAACCATAGAGC 1370
Query 1378 CAATGGTGGTTGACATCTCCATGGCCATTTCATTGCTAACAAACAAGAAATCTCGGGATC 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 CAATGGTGGTTGACATCTCCATGGCCATTTCATTGCTAACAAACAAGAAATCTCGGGATC 1430
Query 1438 TGATCATGATTCTCAACTCCAAAAGATTTCTAGATAGGCTTGTTTCAGAGCTGGAGGAGA 1497
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1431 TGATCATGATCCTCAACTCCAAAAGATTCCTAGATAGGCTTGTTTCAGAGCTGGAGGAGA 1490
Query 1498 AGAAGCACCGTGAAGTGAAGTTAAGAGAGAGCTTGAAAGATGTGGGTAGAAGACGCATGG 1557
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1491 AGAAGCACCGTGAAGTGAAGTTAAGAGAGAGCTTGAAAGATGTGGGTAGAAGACGCATGG 1550
Query 1558 AGCTGCAGAATTCACTCTCTTCTATATGGCCAAAACAGGAAGCTGCACTTTCGAAGACAA 1617
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 1551 AGCTGCAGAATTCACTTTCTGCTATATGGCCAAAACAGGAAGCTGCACTTTCGAAAACAA 1610
Query 1618 GAGAACTGAAGGAGCTATGTGAGACAAGTCTCTCTTCCATGTTTGATGGAAGACCTGTGA 1677
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 GAGAACTCAAGGAGCTATGTGAGACAAGTCTCTCTTCCATGTTTGATGGAAGACCTGTGA 1670
Query 1678 ATATAAGAGGAGAGATCAATACATTGCTGAACGCAGGGGTTTCTGCTTAGTTTGATCTTT 1737
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1671 ATATAAGAGGAGAGATCAATACATTGTTGAACGCTGGGGTTTCTGCTTAGTTTGATCTTT 1730
Query 1738 GGGATTGGCTAGAAAACTTAGTTTCAGAACACCAAGTGACTCTTGTTTATTACTTTAGGA 1797
|||||| |||||||||||||||||||| |||||||||||| || |||| || ||||||||
Sbjct 1731 GGGATTTGCTAGAAAACTTAGTTTCAGTACACCAAGTGACCCT-GTTTCTTGCTTTAGGA 1789
Query 1798 TTTTGCCTTGTTTCAAACTCTTCTT-TATTT 1827
|||||||||||||||||||||| || |||||
Sbjct 1790 TTTTGCCTTGTTTCAAACTCTT-TTGTATTT 1819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90411181545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5