BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487498
Length=1778
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06839.3 | Symbols: TGA10, bZIP65 | bZIP transcription facto... 1851 0.0
> AT5G06839.3 | Symbols: TGA10, bZIP65 | bZIP transcription factor
family protein | chr5:2120527-2126455 FORWARD LENGTH=2005
Length=2005
Score = 1851 bits (1002), Expect = 0.0
Identities = 1131/1188 (95%), Gaps = 29/1188 (2%)
Strand=Plus/Plus
Query 617 CAATAAGGAAGGAAACCGCAAGGGTCTTGCCTCATCGGACCATGACATACCGAAATCGTC 676
||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 798 CAAGAAGGAAGGGAACCGCAAGGGTCTTGCCTCATCGGACCATGACATACCTAAATCGTC 857
Query 677 AGACCCTAAAACATTGAGAAGACTAGCACAAAACAGAGAAGCAGCAAGAAAAAGCAGATT 736
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 858 AGACCCTAAAACATTGAGAAGACTAGCACAAAACAGAGAAGCAGCAAGAAAAAGCAGATT 917
Query 737 ACGTAAAAAGGCTTATGTTCAGCAACTAGAGTCATGTAGGATCAAACTGACCCAACTAGA 796
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 918 ACGTAAAAAGGCTTATGTTCAGCAACTCGAGTCATGTAGGATCAAACTGACCCAACTAGA 977
Query 797 ACAAGAGATTCAACGGGCCAGATCCCAAGGCGTATTCTTTGGAGGATCTCTTATAGGAGG 856
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 978 ACAAGAGATTCAACGGGCCAGATCCCAAGGCGTATTCTTTGGAGGGTCTCTTATAGGAGG 1037
Query 857 AGATCAACAGCAAGGTGGACTACCCATTGGCCCTGGCAACATCAGCTCCGCAGAAGCAGC 916
||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1038 AGATCAACAGCAAGGTGGACTACCCATTGGCCCTGGCAACATCAGCT---CTGAAGCAGC 1094
Query 917 GGTGTTCGATATGGAATATGCGAGGTGGTTGGAGGAGCAGCAGAGGCTATTAAACGAACT 976
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1095 GGTGTTCGATATGGAATATGCGAGGTGGCTGGAGGAGCAGCAGAGGCTATTAAACGAACT 1154
Query 977 AAGGGTGGCGACACAAGAGCACTTGGCCGAGAACGAGCTTAGGATGTTTGTGGACACTTG 1036
||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||| ||
Sbjct 1155 AAGGGTGGCAACACAAGAACACTTGTCCGAGAACGAGCTTAGGATGTTTGTGGACACATG 1214
Query 1037 TTTAGCTCATTATGACCATTTGATTAACCTCAAAGCCATGGTCGCTAAGACCGATGTCTT 1096
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1215 TTTAGCTCATTATGACCATTTGATTAACCTCAAGGCTATGGTCGCTAAGACCGATGTCTT 1274
Query 1097 CCACCTTATTTCTGGAGCATGGAAAACTCCAGCCGAACGTTGCTTCTTGTGGATGGGTGG 1156
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1275 CCACCTCATTTCTGGAGCATGGAAAACTCCAGCTGAACGTTGCTTCTTGTGGATGGGTGG 1334
Query 1157 TTTCCGTCCATCGGAGATCATTAAGGTGATTGTGAACCAGATAGAACCACTGACGGAGCA 1216
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1335 TTTCCGTCCATCGGAGATCATTAAGGTGATTGTGAACCAGATAGAACCATTGACGGAGCA 1394
Query 1217 ACAAATAGTTGGGATATGTGGACTGCAACAGTCCACACAAGAGGCCGAGGAGGCTCTCTC 1276
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1395 ACAGATAGTTGGGATATGTGGGCTGCAACAGTCCACACAAGAGGCCGAGGAGGCTCTCTC 1454
Query 1277 GCAAGGCCTCGAGGCATTGAATCAATCACTTTCCGATAGCATTGTCTCTGACTCTCTCCC 1336
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1455 GCAAGGCCTCGAGGCGTTGAATCAATCACTTTCCGATAGCATTGTCTCTGACTCCCTCCC 1514
Query 1337 GCCTGCCTCCGCACCACTTCCTCCTCATCTATCCAATTTCATGTCACACATGTCCTTAGC 1396
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1515 GCCTGCCTCCGCACCACTTCCTCCTCATCTATCCAATTTCATGTCACACATGTCCTTAGC 1574
Query 1397 TCTCAACAAGCTCTCTGCTCTCGAGGGCTTCGTTCTCCAGGCGGATAATTTGAGGCACCA 1456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1575 TCTCAACAAGCTCTCTGCTCTCGAGGGCTTCGTTCTCCAGGCGGATAATTTGAGGCACCA 1634
Query 1457 AACGATCCATAGGCTGAACCAATTGTTGACGACCCGTCAAGAAGCACGGTGTCTTCTAGC 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1635 AACGATCCATAGGCTGAACCAATTGTTGACGACCCGTCAAGAAGCACGGTGTCTTCTAGC 1694
Query 1517 CGTAGCGGAGTACTTCCACCGTCTTCAGGCTCTAAGTTCTCTCTGGCTAGCCCGTCCTCG 1576
||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1695 CGTTGCGGAGTACTTCCACCGTCTTCAAGCTCTAAGTTCTCTCTGGCTAGCCCGTCCTCG 1754
Query 1577 GCAAGACGGATGATACTAAAACAACTGATGAA--AA-C-AA------------GAGAATA 1620
|||||| |||| |||||||||||||||||||| || | || |||||||
Sbjct 1755 GCAAGATGGATAATACTAAAACAACTGATGAAGGAAACCAAAAACAAAAACAAGAGAATA 1814
Query 1621 GGTTGATTAGTTAGCC---AGCTTGACCTCTTTATCATATAT-T-GTCTCTCTACTCAAA 1675
|||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 1815 GGTTGATTAGTTAGCCGCCAGCTTGACCTCTTTATCATATATATCGTCTCTCTACTCAAA 1874
Query 1676 TACAGTGCAATTAGGGAAAATTGTTTGGCTTCTTTTTGTTATATGATTCTTACTAC-ATG 1734
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1875 TACAGTGCAATTAGGGAAAATTGTTTGGCTTCTTTTTGTTATATGATTCTTACTATTATG 1934
Query 1735 TTTTTAATTAAGATGCCGATTATATA----GACAAGTATTACATACCT 1778
|||||||| ||||||| ||||||||| |||||||||| |||||||
Sbjct 1935 TTTTTAATCAAGATGCAGATTATATATATAGACAAGTATTCCATACCT 1982
Score = 830 bits (449), Expect = 0.0
Identities = 594/654 (91%), Gaps = 50/654 (8%)
Strand=Plus/Plus
Query 1 TTTGAACCCTCTCCACTTCAATATAACCGACCTCTCTTCTCTCTAGTCTaaaaaaaaCAC 60
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 37 TTTGAACCCTCTCCACTTCAATATAACCGACCTCTCTTCTCTCT--TCTGAAAAAAACAC 94
Query 61 CAAAGTAGCTTTAAATGCTCCGTTACATAATCTCTATCTCTTTCCAAGAATATAGAGAAA 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 CAAAGGAGCTTTAAATGCTCCGTTACATAATCTCTATCTCTTTCCAAGAATATAGAGAAA 154
Query 121 GAAAAATAATATACAAGAATT-AAAGAAGATATATC-TCA--TCTCT--CTAGTGATCAA 174
| ||||||||||||||||||| ||||||| |||||| ||| ||||| |||||||||||
Sbjct 155 GGAAAATAATATACAAGAATTAAAAGAAGGTATATCATCATCTCTCTAGCTAGTGATCAA 214
Query 175 AGCACCGtcatcatcatcatcatat-atca-------tc--------aG-CTTAACATAA 217
|||||||||||||||||||| |||| |||| || || | |||||||
Sbjct 215 AGCACCGTCATCATCATCAT-ATATCATCAGCTTGCCTCAGAGGAGAAGAC-CAACATAA 272
Query 218 GAGAGATCGAAGATC-AAATCTATCTCTCTTCATCATCTTCTGCTGTTACTATCATTCAC 276
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
Sbjct 273 GAGAGATCGAAGATCAAAATCTATCTCTCTTCATCATCTTCTGCTGTTACTATCA-T-A- 329
Query 277 ACACACGCTCTCTCAAACATCATCCCATATATAGATAGACTTCTC-T--tcatcatcaaa 333
|||||||||||||||||||||| || ||||| ||||||||||| | |||||||||||
Sbjct 330 TCACACGCTCTCTCAAACATCAT-CC-TATAT--ATAGACTTCTCTTCATCATCATCAAA 385
Query 334 tgcaaggtcatcaccagaatcatcatcaacaacacttatcatcatcCTCTGCCACGTCTT 393
|||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 386 TGCAAGGTCATCACCAGAATCATCAT---CAACACTTATCATCATCCTCCGCCACGTCTT 442
Query 394 CCCATGGAAACTTCATGAACAAAGATGGGTATGATATTGGAGAGATAGACCCATCACTCT 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 CCCATGGAAACTTCATGAACAAAGATGGGTATGATATTGGAGAGATAGACCCATCACTCT 502
Query 454 TCCTGTATCTTGATGGACAAGGACATCATGATCCTCCATCAACTGCTCCT-C-C-TTTAC 510
|||| ||||||||||||||||||||||||||||||||||||||||||||| | | |||||
Sbjct 503 TCCTCTATCTTGATGGACAAGGACATCATGATCCTCCATCAACTGCTCCTTCTCCTTTAC 562
Query 511 CTCATCATCATCACACAACTCAGAATTTGGCGATGAGACCTCCA---TCGACGCTCAACA 567
||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 563 ---ATCATCATCACACAACTCAGAATTTGGCGATGAGACCTCCAACATCGACGCTCAACA 619
Query 568 TCTTCCCATCTCAGCCGATGCACATAGAGCCACCTCCTTCTTCTACACACAATA 621
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 620 TCTTTCCATCTCAGCCTATGCACATAGAGCCACCTCCTTCTTCTACACACAATA 673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87951354840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5