BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487501
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06860.1 | Symbols: PGIP1, ATPGIP1 | polygalacturonase inhib... 1594 0.0
AT5G06870.1 | Symbols: PGIP2, ATPGIP2 | polygalacturonase inhib... 817 0.0
AT5G06865.1 | Symbols: | other RNA | chr5:2132197-2133746 REVE... 728 0.0
> AT5G06860.1 | Symbols: PGIP1, ATPGIP1 | polygalacturonase inhibiting
protein 1 | chr5:2132350-2133587 FORWARD LENGTH=1169
Length=1169
Score = 1594 bits (863), Expect = 0.0
Identities = 1042/1128 (92%), Gaps = 13/1128 (1%)
Strand=Plus/Plus
Query 30 TCTCTTGTTCTTGTTCACATTCCTCACGATCTCTTTGTCTAAAGATCTTTGTAACCAAAA 89
||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||
Sbjct 47 TCTCTTGTTCTTGTTCACATTCCTCACGACCTGTTTGTCTAAAGATCTCTGTAACCAAAA 106
Query 90 TGACAAAAACACCCTTCTAAAGATCAAGAAATCCCTAAACAACCCTTACCACCTGGCTTC 149
||||||||||||||| || |||||||||||||| |||||||||||||| ||||| |||||
Sbjct 107 TGACAAAAACACCCTCCTCAAGATCAAGAAATCTCTAAACAACCCTTATCACCTCGCTTC 166
Query 150 GTGGCACCC-CGAGACCGACTGTTGCTCATGGTACTGCCTCGAGTGCGGCGACGCCACCG 208
||| |||| | | |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 167 ATGGGACCCTC-AAACCGACTGTTGCTCCTGGTACTGCCTTGAGTGCGGCGACGCCACCG 225
Query 209 TTAACCACCGCGTCACCGCCCTAACTATATTCTCCGGCCAGATCTCTGGTCAGATCCCTC 268
|||||||||| || |||||| |||| |||||||||||||||||||| |||||||||||
Sbjct 226 TTAACCACCGTGTTACCGCCTTAACCATATTCTCCGGCCAGATCTCCGGTCAGATCCCGG 285
Query 269 CTGAAGTCGGTGACTTGCCGTATCTTGAAACCCTTGTCTTCCGCAAACTCTCTAACCTCA 328
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 286 CTGAAGTCGGTGACTTGCCGTATCTTGAGACCCTTGTCTTCCGCAAACTCTCTAACCTCA 345
Query 329 CCGGTCA-AATCCAACCCACCATCGCTAAACTCAAGAACCT-C-AAGTACCTCAGGCTCA 385
||||| | |||||||||||||||||| |||||||||||||| | || | ||||||||||
Sbjct 346 CCGGT-ACAATCCAACCCACCATCGCCAAACTCAAGAACCTCCGAA-T-GCTCAGGCTCA 402
Query 386 GTTGGACAAATCTGACGGGTCCAATTCCTGATTTTCTAAGCCAGCTCAAGAATCTCGAGT 445
| ||||| |||||||| |||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 403 GCTGGACGAATCTGACAGGTCCAATTCCTGACTTTATAAGTCAGCTCAAGAATCTCGAGT 462
Query 446 TCTTAGAACTTTCCTTCAATGATCTCTCTGGTTCCATACCAAGTTCACTCTCTACGTTAC 505
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 463 TCTTAGAACTTTCCTTCAATGATCTCTCTGGTTCCATTCCAAGTTCTCTCTCTACGTTAC 522
Query 506 CTAATATCCTGGCCCTTGAACTTAGCAGGAACAAACTTACAGGTTCAATACCAGAGTCAT 565
|||| ||| |||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 523 CTAAAATCTTGGCTCTTGAACTTAGCAGGAACAAACTTACAGGTTCCATACCAGAGTCAT 582
Query 566 TTGGGTCGTTTCCAGGAACAGTCCCTGACCTTCGCCTATCACACAACCAGCTCTCCGGTC 625
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 583 TTGGGTCGTTTCCAGGAACAGTCCCTGACCTTCGCCTATCACATAACCAGCTCTCCGGTC 642
Query 626 CGATACCCAAATCACTAGGCAACCTCGACTTTAACCGGATCGATTTCTCCCGGAACAAGC 685
| |||||||||||| |||||||| |||||||||||||||||||||| ||||| |||||||
Sbjct 643 CAATACCCAAATCATTAGGCAACATCGACTTTAACCGGATCGATTTATCCCGCAACAAGC 702
Query 686 TCGAAGGTGATGCTTCGATGTTGTTTGGTGCCAACAAAACGACATGGTCCATTGATTTAT 745
|| |||||||||||||||||||||||||| |||||||||| || ||||| ||||| ||||
Sbjct 703 TCCAAGGTGATGCTTCGATGTTGTTTGGTTCCAACAAAACAACCTGGTCTATTGACTTAT 762
Query 746 CAAGAAACATGTTC-AGCTTCGATATCTCAAAGGTTGAGATCCCTAAGGCACTTGGTATC 804
|||||||||||||| || |||||||||||||||||||| |||||||| |||||||||||
Sbjct 763 CAAGAAACATGTTCCAG-TTCGATATCTCAAAGGTTGATATCCCTAAAACACTTGGTATC 821
Query 805 TTGGACTTAAACCACAATGGGATCACAGGGAATATACCGGTTCAGTGGACTGAAACTCCT 864
|||||||| ||||||||||||||||| |||||||| ||||| |||||||||||| |||||
Sbjct 822 TTGGACTTGAACCACAATGGGATCACTGGGAATATTCCGGTGCAGTGGACTGAAGCTCCT 881
Query 865 CTTCAATTCTTCAATGTTAGCTACAATAAATTGTGTGGACATATCCCAACAGGAGGGAAA 924
||||| |||||||||||||||||||| ||| |||||||||| |||||||| |||||||||
Sbjct 882 CTTCAGTTCTTCAATGTTAGCTACAACAAACTGTGTGGACACATCCCAACTGGAGGGAAA 941
Query 925 CTTCAGACATTTGATTCTTATTCCTATTTCCATAACAAGTGTTTGTGTGGTGCTCCTCTT 984
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 942 CTTCAGACATTTGATTCTTATTCCTATTTTCACAACAAGTGTTTGTGTGGTGCTCCTCTT 1001
Query 985 GAAATTTGCAAGTGAACCAAGCTTGTCTCTAGGATTTCGAAAAAATCTATTTGAGTCAAT 1044
||||||||||||| |||||||||| ||||||||||| ||||||||| |||||||||||||
Sbjct 1002 GAAATTTGCAAGTAAACCAAGCTTATCTCTAGGATTACGAAAAAATATATTTGAGTCAAT 1061
Query 1045 A-TA--GACAAATATGTAATATTATTCGGATTGATTAATAAAACATGAACCAAAACTCGC 1101
| || |||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
Sbjct 1062 AATATAGACAAATATGTAATGTTATTCGGATTGATTAATAAAACATGAACCAAACCTCTC 1121
Query 1102 CTTTGATGAATTCATAGCACATTTTCAAAGTGTTTGATTTGATGGATT 1149
||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 1122 ATTTGATGTATTCATAGCACATTTTCAAAATGTTTTATTTGATGGATT 1169
> AT5G06870.1 | Symbols: PGIP2, ATPGIP2 | polygalacturonase inhibiting
protein 2 | chr5:2133918-2135166 FORWARD LENGTH=1166
Length=1166
Score = 817 bits (442), Expect = 0.0
Identities = 816/992 (82%), Gaps = 43/992 (4%)
Strand=Plus/Plus
Query 32 TCTTGTTCTTGTTCAC-AT--TCCTCACGATC-TCTTT-GTCTAAAGATCTTTGTAACCA 86
||||| |||||| ||| | ||||||||| | ||||| | |||||||||| ||| | |
Sbjct 46 TCTTGCTCTTGTCCACTCTCCTCCTCACGA-CTTCTTTAG-CTAAAGATCTCTGTCA-TA 102
Query 87 AA-ATGACAAAAAC-ACCCTTCTAAAGATCAAGAAATCCCTAAACAACCCTTACCACCTG 144
|| ||||| ||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 103 AAGATGAC-AAAACTACCCTCCTCAAGATCAAGAAATCCCTAAACAACCCTTACCACCTC 161
Query 145 GCTTCGTGGCACCCCGAGACCGACTGTTGCTCATGGTACTGCCTCGAGTGCGGCGACGCC 204
|| || ||| | ||| | |||||||||||||| ||||||||||||||||||||||||||
Sbjct 162 GCCTCATGGGATCCCAAAACCGACTGTTGCTCTTGGTACTGCCTCGAGTGCGGCGACGCT 221
Query 205 ACCGTTAACCACCGCGTCACCGCCCTAA-CTATATTCTCCGGCCAGATCTCTGGTCAGAT 263
|| || |||||||| ||||| |||||| | ||| |||| ||||||| ||||||||
Sbjct 222 ACTGTCAACCACCGTGTCACTTCCCTAATC-ATACAAGACGGCGAGATCTCCGGTCAGAT 280
Query 264 CCCTCCTGAAGTCGGTGACTTGCCGTATCTTGAAA-CCCTTGTCTTCCGCAAACTCTCTA 322
||| ||||||||||||||||| ||||||||| | | ||||| |||||||||||||| |||
Sbjct 281 CCCCCCTGAAGTCGGTGACTTACCGTATCTT-ACATCCCTTATCTTCCGCAAACTCACTA 339
Query 323 ACCTCACCGGTCAAATCCAACCCACCATCGCTAAACTCAAGAACCTCAAGTACCTCAGGC 382
||||||| ||||| ||||||||||| ||||| || ||||||||||||| | ||||| |
Sbjct 340 ACCTCACTGGTCACATCCAACCCACTATCGCCAAGCTCAAGAACCTCACTTTTCTCAGAC 399
Query 383 TCAGTTGGACAAATCTGACGGGTCCAATTCCTGATTTTCTAAGCCAGCTCAAGAATCTCG 442
| || ||||| ||||| || ||||| ||||||| ||||| || |||||||||||||| |
Sbjct 400 TAAGCTGGACCAATCTCACCGGTCCGGTTCCTGAGTTTCTGAGTCAGCTCAAGAATCTTG 459
Query 443 AGTTC-TTAGAACTTTCCTTCAATGATCTCTCTGGTTCCATACCAAGTTCACTCTCTACG 501
||| | || || |||||||||||||| ||||||||||||||||| ||||| |||||| |
Sbjct 460 AGTACATT-GACCTTTCCTTCAATGACCTCTCTGGTTCCATACCTAGTTCCCTCTCTTCA 518
Query 502 TTACCTAATA-TCCTGGCCCTTGAACTTAGCAGGAACAAACTTACAGGTTCAATACCAGA 560
|||| ||| | || | ||||||||||| |||||||| ||||||||| | ||||||||
Sbjct 519 TTACGTAA-ACTCGAGTATCTTGAACTTAGTAGGAACAAGCTTACAGGTCCGATACCAGA 577
Query 561 GTCATTTGGGTCGTTTCCAGGAACAG-TCCCT-GACCTTCGCCTATCACACAACCAGCTC 618
|||||||||| ||||| |||||| || ||||| | | || |||||||||||||||||||
Sbjct 578 GTCATTTGGGACGTTTTCAGGAA-AGGTCCCTAGTCTTTT-CCTATCACACAACCAGCTC 635
Query 619 TCCGGTCCGATACCCAAA-TCACTAGGCAA-CCTCGACTTTAACCGGATCGATTTCTCCC 676
|| ||| | ||||| ||| ||||||||||| || ||||||| |||| |||||||| || |
Sbjct 636 TCTGGTACTATACC-AAAGTCACTAGGCAATCC-CGACTTTTACCGCATCGATTTATCTC 693
Query 677 GGAACAAGCT-CGAAGGTGATGCTTCGATGTTGTTTGGTGCCAACAAAACGACATGG-TC 734
|||||||||| | |||| |||||||| || |||||||| || || ||||| |||||| ||
Sbjct 694 GGAACAAGCTTC-AAGGCGATGCTTCAATCTTGTTTGGAGCTAAAAAAACAACATGGATC 752
Query 735 CATTGATTTATCAAGAAACATGTTC-AGCTTCGATATCTCAAAGGTTGAGATCCCTAAGG 793
||||| ||||||||||||||||| || |||||| |||| |||||| || || |||||
Sbjct 753 G-TTGATATATCAAGAAACATGTTCCAG-TTCGATCTCTCCAAGGTTAAGCTCGCTAAGA 810
Query 794 CACTTGGTATCTTGGACTTAAACCACAATGGGATCACAGGGAATATACCGGTTCAGTGGA 853
||||| || ||||||| | || |||||||| |||||||||| ||| |||| | ||||||
Sbjct 811 CACTTAATAACTTGGACATGAATCACAATGGCATCACAGGGAGTATTCCGGCTGAGTGGA 870
Query 854 -CTGAAA-CTCCTCTTCAATT-CTTCAATGTTAGCTACAATAAATTGTGTGGACATATCC 910
| ||| || | |||| || || ||||||||||| || | | ||||||||| ||||
Sbjct 871 GC--AAAGCTTATTTTCAGTTACTG-AATGTTAGCTATAACAGACTGTGTGGACGCATCC 927
Query 911 C-AACAGGAGGGAA-ACTTCAGACATTTGATTCTTATTCCTATTTCCATAACAAGTGTTT 968
| || ||||| | | | |||| | ||||||||||||||||| |||||| |||||||||||
Sbjct 928 CCAA-AGGAGAGTATA-TTCAAAGATTTGATTCTTATTCCTTTTTCCACAACAAGTGTTT 985
Query 969 GTGTGGTGCTCCTCTTGAAATTTGCAAGTGAA 1000
|||||||| |||||| | |||||||||||
Sbjct 986 ATGTGGTGCACCTCTTCCTAGTTGCAAGTGAA 1017
> AT5G06865.1 | Symbols: | other RNA | chr5:2132197-2133746 REVERSE
LENGTH=1402
Length=1402
Score = 728 bits (394), Expect = 0.0
Identities = 482/524 (92%), Gaps = 8/524 (2%)
Strand=Plus/Minus
Query 30 TCTCTTGTTCTTGTTCACATTCCTCACGATCTCTTTGTCTAAAGATCTTTGTAACCAAAA 89
||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||
Sbjct 1203 TCTCTTGTTCTTGTTCACATTCCTCACGACCTGTTTGTCTAAAGATCTCTGTAACCAAAA 1144
Query 90 TGACAAAAACACCCTTCTAAAGATCAAGAAATCCCTAAACAACCCTTACCACCTGGCTTC 149
||||||||||||||| || |||||||||||||| |||||||||||||| ||||| |||||
Sbjct 1143 TGACAAAAACACCCTCCTCAAGATCAAGAAATCTCTAAACAACCCTTATCACCTCGCTTC 1084
Query 150 GTGGCACCC-CGAGACCGACTGTTGCTCATGGTACTGCCTCGAGTGCGGCGACGCCACCG 208
||| |||| | | |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1083 ATGGGACCCTC-AAACCGACTGTTGCTCCTGGTACTGCCTTGAGTGCGGCGACGCCACCG 1025
Query 209 TTAACCACCGCGTCACCGCCCTAACTATATTCTCCGGCCAGATCTCTGGTCAGATCCCTC 268
|||||||||| || |||||| |||| |||||||||||||||||||| |||||||||||
Sbjct 1024 TTAACCACCGTGTTACCGCCTTAACCATATTCTCCGGCCAGATCTCCGGTCAGATCCCGG 965
Query 269 CTGAAGTCGGTGACTTGCCGTATCTTGAAACCCTTGTCTTCCGCAAACTCTCTAACCTCA 328
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 964 CTGAAGTCGGTGACTTGCCGTATCTTGAGACCCTTGTCTTCCGCAAACTCTCTAACCTCA 905
Query 329 CCGGTCA-AATCCAACCCACCATCGCTAAACTCAAGAACCT-C-AAGTACCTCAGGCTCA 385
||||| | |||||||||||||||||| |||||||||||||| | || | ||||||||||
Sbjct 904 CCGGT-ACAATCCAACCCACCATCGCCAAACTCAAGAACCTCCGAA-T-GCTCAGGCTCA 848
Query 386 GTTGGACAAATCTGACGGGTCCAATTCCTGATTTTCTAAGCCAGCTCAAGAATCTCGAGT 445
| ||||| |||||||| |||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 847 GCTGGACGAATCTGACAGGTCCAATTCCTGACTTTATAAGTCAGCTCAAGAATCTCGAGT 788
Query 446 TCTTAGAACTTTCCTTCAATGATCTCTCTGGTTCCATACCAAGTTCACTCTCTACGTTAC 505
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 787 TCTTAGAACTTTCCTTCAATGATCTCTCTGGTTCCATTCCAAGTTCTCTCTCTACGTTAC 728
Query 506 CTAATATCCTGGCCCTTGAACTTAGCAGGAACAAACTTACAGGT 549
|||| ||| |||| ||||||||||||||||||||||||||||||
Sbjct 727 CTAAAATCTTGGCTCTTGAACTTAGCAGGAACAAACTTACAGGT 684
Score = 689 bits (373), Expect = 0.0
Identities = 438/470 (93%), Gaps = 2/470 (0%)
Strand=Plus/Minus
Query 546 AGGTTCAATACCAGAGTCATTTGGGTCGTTTCCAGGAACAGTCCCTGACCTTCGCCTATC 605
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 AGGTTCCATACCAGAGTCATTTGGGTCGTTTCCAGGAACAGTCCCTGACCTTCGCCTATC 559
Query 606 ACACAACCAGCTCTCCGGTCCGATACCCAAATCACTAGGCAACCTCGACTTTAACCGGAT 665
||| ||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||
Sbjct 558 ACATAACCAGCTCTCCGGTCCAATACCCAAATCATTAGGCAACATCGACTTTAACCGGAT 499
Query 666 CGATTTCTCCCGGAACAAGCTCGAAGGTGATGCTTCGATGTTGTTTGGTGCCAACAAAAC 725
|||||| ||||| ||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 498 CGATTTATCCCGCAACAAGCTCCAAGGTGATGCTTCGATGTTGTTTGGTTCCAACAAAAC 439
Query 726 GACATGGTCCATTGATTTATCAAGAAACATGTTC-AGCTTCGATATCTCAAAGGTTGAGA 784
|| ||||| ||||| |||||||||||||||||| || |||||||||||||||||||| |
Sbjct 438 AACCTGGTCTATTGACTTATCAAGAAACATGTTCCAG-TTCGATATCTCAAAGGTTGATA 380
Query 785 TCCCTAAGGCACTTGGTATCTTGGACTTAAACCACAATGGGATCACAGGGAATATACCGG 844
||||||| ||||||||||||||||||| ||||||||||||||||| |||||||| ||||
Sbjct 379 TCCCTAAAACACTTGGTATCTTGGACTTGAACCACAATGGGATCACTGGGAATATTCCGG 320
Query 845 TTCAGTGGACTGAAACTCCTCTTCAATTCTTCAATGTTAGCTACAATAAATTGTGTGGAC 904
| |||||||||||| |||||||||| |||||||||||||||||||| ||| |||||||||
Sbjct 319 TGCAGTGGACTGAAGCTCCTCTTCAGTTCTTCAATGTTAGCTACAACAAACTGTGTGGAC 260
Query 905 ATATCCCAACAGGAGGGAAACTTCAGACATTTGATTCTTATTCCTATTTCCATAACAAGT 964
| |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 259 ACATCCCAACTGGAGGGAAACTTCAGACATTTGATTCTTATTCCTATTTTCACAACAAGT 200
Query 965 GTTTGTGTGGTGCTCCTCTTGAAATTTGCAAGTGAACCAAGCTTGTCTCT 1014
||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 199 GTTTGTGTGGTGCTCCTCTTGAAATTTGCAAGTAAACCAAGCTTATCTCT 150
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56375212035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5