BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487502
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06870.1 | Symbols: PGIP2, ATPGIP2 | polygalacturonase inhib... 1714 0.0
AT5G06860.1 | Symbols: PGIP1, ATPGIP1 | polygalacturonase inhib... 902 0.0
AT5G06865.1 | Symbols: | other RNA | chr5:2132197-2133746 REVE... 531 7e-150
> AT5G06870.1 | Symbols: PGIP2, ATPGIP2 | polygalacturonase inhibiting
protein 2 | chr5:2133918-2135166 FORWARD LENGTH=1166
Length=1166
Score = 1714 bits (928), Expect = 0.0
Identities = 1011/1052 (96%), Gaps = 2/1052 (0%)
Strand=Plus/Plus
Query 1 AAACACACTATGGATAAGACAATGACACTGTTCTTGCTCTTGTCCACTCTCCTCCTCACG 60
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 15 AAAAACACTATGGATAAGACAATGACACTGTTCTTGCTCTTGTCCACTCTCCTCCTCACG 74
Query 61 ACTTCTTTAGCTAAAGATCTCTGTCACAAAGATGACAAAAAC-ACCCTCCTCAAGATCAA 119
|||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||
Sbjct 75 ACTTCTTTAGCTAAAGATCTCTGTCATAAAGATGACAAAA-CTACCCTCCTCAAGATCAA 133
Query 120 GAAATCCCTAAACAACCCTTACCACCTCGCCTCATGGGACCCCAAAACCGACTGTTGCTC 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 134 GAAATCCCTAAACAACCCTTACCACCTCGCCTCATGGGATCCCAAAACCGACTGTTGCTC 193
Query 180 TTGGTACTGTCTCGAGTGCGGCGACGCTACCGTCAACCACCGCGTCACTTCCCTAATCAT 239
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 194 TTGGTACTGCCTCGAGTGCGGCGACGCTACTGTCAACCACCGTGTCACTTCCCTAATCAT 253
Query 240 ACAAGACGGCGAGATCTCCGGTCAGATCCCACCTGAAGTCGGTGACTTACCGTATCTTAC 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 254 ACAAGACGGCGAGATCTCCGGTCAGATCCCCCCTGAAGTCGGTGACTTACCGTATCTTAC 313
Query 300 TTCCCTTATCTTCCGCAAACTCACTAACCTCACTGGTCACATCCAACCCACTATCGCCAA 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 ATCCCTTATCTTCCGCAAACTCACTAACCTCACTGGTCACATCCAACCCACTATCGCCAA 373
Query 360 GCTCAAGAATCTCACTTTTCTCAGACTAAGCTGGACGAATCTCACCGGTCCGGTTCCTGA 419
||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 374 GCTCAAGAACCTCACTTTTCTCAGACTAAGCTGGACCAATCTCACCGGTCCGGTTCCTGA 433
Query 420 GTTTCTGAGTCAGCTCAAGAATCTTGAGTACATTGACCTTTCCTTCAATGATCTCTATGG 479
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 434 GTTTCTGAGTCAGCTCAAGAATCTTGAGTACATTGACCTTTCCTTCAATGACCTCTCTGG 493
Query 480 TTCCATACCAAGTTCTCTCTCTTCATTACCTAAACTCGAGTATCTTGAACTTAGTAGGAA 539
||||||||| ||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 494 TTCCATACCTAGTTCCCTCTCTTCATTACGTAAACTCGAGTATCTTGAACTTAGTAGGAA 553
Query 540 CAAGCTTACAGGTCCGATACCAGAGTCATTTGGGACGTTTTCAGGAAAAGTCCCTAGTCT 599
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 554 CAAGCTTACAGGTCCGATACCAGAGTCATTTGGGACGTTTTCAGGAAAGGTCCCTAGTCT 613
Query 600 TTTCCTATCACACAACCAGCTCTCTGGTACTATACCAAAATCACTAGGCAATCCCGACTT 659
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 614 TTTCCTATCACACAACCAGCTCTCTGGTACTATACCAAAGTCACTAGGCAATCCCGACTT 673
Query 660 TTACCGCATCGATTTATCCCGAAACAAGCTTCAAGGCGATGCTTCGATCTTGTTTGGAGC 719
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 674 TTACCGCATCGATTTATCTCGGAACAAGCTTCAAGGCGATGCTTCAATCTTGTTTGGAGC 733
Query 720 TaaaaaaaCGACATGGATCGTTGATATATCAAGAAACAAGTTCCAGTTCGATCTCTCCAA 779
||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 734 TAAAAAAACAACATGGATCGTTGATATATCAAGAAACATGTTCCAGTTCGATCTCTCCAA 793
Query 780 GGTTAAGCTCGCTAAGACACTTAATAACTTGGACATGAATCACAATGAAATCACAGGGAA 839
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 794 GGTTAAGCTCGCTAAGACACTTAATAACTTGGACATGAATCACAATGGCATCACAGGGAG 853
Query 840 TATTCCGGCTGAGTGGAGCAAAGCTTATTTTCAGTTACTCAATGTTAGCTATAACAGATT 899
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 854 TATTCCGGCTGAGTGGAGCAAAGCTTATTTTCAGTTACTGAATGTTAGCTATAACAGACT 913
Query 900 GTGTGGACGCATCCCCAAAGGAGAGTTTATTCAGAGATTTGATTCTTATTCCTTTTTCCA 959
|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 914 GTGTGGACGCATCCCCAAAGGAGAGTATATTCAAAGATTTGATTCTTATTCCTTTTTCCA 973
Query 960 CAACAAGTGTTTGTGTGGTGCACCTCTTCCCAGTTGTAAGTGAAGATTCAAGCGAAGCCA 1019
|||||||||||| ||||||||||||||||| ||||| |||||||||||| ||| || |||
Sbjct 974 CAACAAGTGTTTATGTGGTGCACCTCTTCCTAGTTGCAAGTGAAGATTCCAGCAAAACCA 1033
Query 1020 AGCTTTATCTCTAATGTACCAAATAATCAATC 1051
||| |||||||| || ||||||||||| ||||
Sbjct 1034 AGCATTATCTCTGATATACCAAATAATTAATC 1065
> AT5G06860.1 | Symbols: PGIP1, ATPGIP1 | polygalacturonase inhibiting
protein 1 | chr5:2132350-2133587 FORWARD LENGTH=1169
Length=1169
Score = 902 bits (488), Expect = 0.0
Identities = 839/1004 (84%), Gaps = 42/1004 (4%)
Strand=Plus/Plus
Query 5 ACACTATGGATAAGACAATGACA--CTGT-TCTTGCTCTTGTCCACTCTCCTCCTCACGA 61
|||| |||||||||||| |||| ||| ||||| |||||| ||| | |||||||||
Sbjct 19 ACACCATGGATAAGACAGCGACATTGTGTCTCTTGTTCTTGTTCAC-AT--TCCTCACGA 75
Query 62 CTTCTTTAG-CTAAAGATCTCTGTCA-CAAAGATGACAAAAACACCCTCCTCAAGATCAA 119
| | ||| | |||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct 76 CCTGTTT-GTCTAAAGATCTCTGTAACCAAA-ATGACAAAAACACCCTCCTCAAGATCAA 133
Query 120 GAAATCCCTAAACAACCCTTACCACCTCGCCTCATGGGACCC-CAAAACCGACTGTTGCT 178
|||||| |||||||||||||| |||||||| ||||||||||| |||| ||||||||||||
Sbjct 134 GAAATCTCTAAACAACCCTTATCACCTCGCTTCATGGGACCCTCAAA-CCGACTGTTGCT 192
Query 179 CTTGGTACTGTCTCGAGTGCGGCGACGCTACCGTCAACCACCGCGTCACTTCCCTAATCA 238
| |||||||| || |||||||||||||| ||||| |||||||| || || || ||| ||
Sbjct 193 CCTGGTACTGCCTTGAGTGCGGCGACGCCACCGTTAACCACCGTGTTACCGCCTTAACCA 252
Query 239 TACAAGACGGCGAGATCTCCGGTCAGATCCCACCTGAAGTCGGTGACTTACCGTATCTT- 297
|| |||| ||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 253 TATTCTCCGGCCAGATCTCCGGTCAGATCCCGGCTGAAGTCGGTGACTTGCCGTATCTTG 312
Query 298 ACTTCCCTTATCTTCCGCAAACTCACTAACCTCACTGGTCACA-TCCAACCCACTATCGC 356
| ||||| |||||||||||||| |||||||||| ||| ||| |||||||||| |||||
Sbjct 313 AGA-CCCTTGTCTTCCGCAAACTCTCTAACCTCACCGGT-ACAATCCAACCCACCATCGC 370
Query 357 CAAGCTCAAGAATCTCACTTTT-CTCAGACTAAGCTGGACGAATCTCACCGGTCCGGTTC 415
||| |||||||| ||| | | ||||| || |||||||||||||| || ||||| |||
Sbjct 371 CAAACTCAAGAACCTC-CGAATGCTCAGGCTCAGCTGGACGAATCTGACAGGTCCAATTC 429
Query 416 CTGAGTTTCTGAGTCAGCTCAAGAATCTTGAGTACATT-GACCTTTCCTTCAATGATCTC 474
|||| ||| | ||||||||||||||||| |||| | || || ||||||||||||||||||
Sbjct 430 CTGACTTTATAAGTCAGCTCAAGAATCTCGAGTTC-TTAGAACTTTCCTTCAATGATCTC 488
Query 475 TATGGTTCCATACCAAGTTCTCTCTCTTCATTACCTAAACTCGAGTATCTTGAACTTAGT 534
| ||||||||| ||||||||||||||| | ||||||||| || | ||||||||||||
Sbjct 489 TCTGGTTCCATTCCAAGTTCTCTCTCTACGTTACCTAAAATCTTGGCTCTTGAACTTAGC 548
Query 535 AGGAACAAGCTTACAGGT-CCGATACCAGAGTCATTTGGGACGTTTTCAGGAAAAGTCCC 593
|||||||| ||||||||| || |||||||||||||||||| ||||| |||||| ||||||
Sbjct 549 AGGAACAAACTTACAGGTTCC-ATACCAGAGTCATTTGGGTCGTTTCCAGGAACAGTCCC 607
Query 594 TAGTCTTTT-CCTATCACACAACCAGCTCTCTGGTACTATACCAAAATCACTAGGCAATC 652
| | | || ||||||||| ||||||||||| ||| | ||||| |||||| ||||||| |
Sbjct 608 T-GACCTTCGCCTATCACATAACCAGCTCTCCGGTCCAATACCCAAATCATTAGGCAA-C 665
Query 653 C-CGACTTTTACCGCATCGATTTATCCCGAAACAAGCTTCAAGGCGATGCTTCGATCTTG 711
||||||| |||| |||||||||||||| |||||||| ||||| ||||||||||| |||
Sbjct 666 ATCGACTTTAACCGGATCGATTTATCCCGCAACAAGCTCCAAGGTGATGCTTCGATGTTG 725
Query 712 TTTGGAGCTaaaaaaaCGACATGGATCG-TTGA-TATATCAAGAAACAAGTTCCAGTTCG 769
||||| | || ||||| || ||| || |||| | |||||||||||| |||||||||||
Sbjct 726 TTTGGTTCCAACAAAACAACCTGG-TCTATTGACT-TATCAAGAAACATGTTCCAGTTCG 783
Query 770 ATCTCTCCAAGGTTAAGCTCGCTAAGACACTTAATAACTTGGACATGAATCACAATGAAA 829
|| |||| |||||| | || |||| |||||| || ||||||| |||| ||||||| |
Sbjct 784 ATATCTCAAAGGTTGATATCCCTAAAACACTTGGTATCTTGGACTTGAACCACAATGGGA 843
Query 830 TCACAGGGAATATTCCGGCTG-AGTGGAGCA-AAGCTTATTTTCAGTTACT-CAATGTTA 886
|||| ||||||||||||| || |||||| | ||||| | ||||||| || ||||||||
Sbjct 844 TCACTGGGAATATTCCGG-TGCAGTGGA-CTGAAGCTCCTCTTCAGTT-CTTCAATGTTA 900
Query 887 GCTATAACAGATTGTGTGGACGCATCCCCAAA-GGAGAGTTTA-TTCAGAGATTTGATTC 944
|||| |||| | ||||||||| |||||| || |||| | | |||||| |||||||||
Sbjct 901 GCTACAACAAACTGTGTGGACACATCCC-AACTGGAGGGAA-ACTTCAGACATTTGATTC 958
Query 945 TTATTCCT-TTTTCCACAACAAGTGTTTGTGTGGTGCACCTCTT 987
|||||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 959 TTATTCCTATTTTC-ACAACAAGTGTTTGTGTGGTGCTCCTCTT 1001
> AT5G06865.1 | Symbols: | other RNA | chr5:2132197-2133746 REVERSE
LENGTH=1402
Length=1402
Score = 531 bits (287), Expect = 7e-150
Identities = 471/558 (84%), Gaps = 20/558 (4%)
Strand=Plus/Minus
Query 5 ACACTATGGATAAGACAATGACA--CTGT-TCTTGCTCTTGTCCACTCTCCTCCTCACGA 61
|||| |||||||||||| |||| ||| ||||| |||||| ||| | |||||||||
Sbjct 1231 ACACCATGGATAAGACAGCGACATTGTGTCTCTTGTTCTTGTTCAC-AT--TCCTCACGA 1175
Query 62 CTTCTTTAG-CTAAAGATCTCTGTCA-CAAAGATGACAAAAACACCCTCCTCAAGATCAA 119
| | ||| | |||||||||||||| | |||| ||||||||||||||||||||||||||||
Sbjct 1174 CCTGTTT-GTCTAAAGATCTCTGTAACCAAA-ATGACAAAAACACCCTCCTCAAGATCAA 1117
Query 120 GAAATCCCTAAACAACCCTTACCACCTCGCCTCATGGGACCC-CAAAACCGACTGTTGCT 178
|||||| |||||||||||||| |||||||| ||||||||||| |||| ||||||||||||
Sbjct 1116 GAAATCTCTAAACAACCCTTATCACCTCGCTTCATGGGACCCTCAAA-CCGACTGTTGCT 1058
Query 179 CTTGGTACTGTCTCGAGTGCGGCGACGCTACCGTCAACCACCGCGTCACTTCCCTAATCA 238
| |||||||| || |||||||||||||| ||||| |||||||| || || || ||| ||
Sbjct 1057 CCTGGTACTGCCTTGAGTGCGGCGACGCCACCGTTAACCACCGTGTTACCGCCTTAACCA 998
Query 239 TACAAGACGGCGAGATCTCCGGTCAGATCCCACCTGAAGTCGGTGACTTACCGTATCTT- 297
|| |||| ||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 997 TATTCTCCGGCCAGATCTCCGGTCAGATCCCGGCTGAAGTCGGTGACTTGCCGTATCTTG 938
Query 298 ACTTCCCTTATCTTCCGCAAACTCACTAACCTCACTGGTCACA-TCCAACCCACTATCGC 356
| ||||| |||||||||||||| |||||||||| ||| ||| |||||||||| |||||
Sbjct 937 AGA-CCCTTGTCTTCCGCAAACTCTCTAACCTCACCGGT-ACAATCCAACCCACCATCGC 880
Query 357 CAAGCTCAAGAATCTCACTTTT-CTCAGACTAAGCTGGACGAATCTCACCGGTCCGGTTC 415
||| |||||||| ||| | | ||||| || |||||||||||||| || ||||| |||
Sbjct 879 CAAACTCAAGAACCTC-CGAATGCTCAGGCTCAGCTGGACGAATCTGACAGGTCCAATTC 821
Query 416 CTGAGTTTCTGAGTCAGCTCAAGAATCTTGAGTACATT-GACCTTTCCTTCAATGATCTC 474
|||| ||| | ||||||||||||||||| |||| | || || ||||||||||||||||||
Sbjct 820 CTGACTTTATAAGTCAGCTCAAGAATCTCGAGTTC-TTAGAACTTTCCTTCAATGATCTC 762
Query 475 TATGGTTCCATACCAAGTTCTCTCTCTTCATTACCTAAACTCGAGTATCTTGAACTTAGT 534
| ||||||||| ||||||||||||||| | ||||||||| || | ||||||||||||
Sbjct 761 TCTGGTTCCATTCCAAGTTCTCTCTCTACGTTACCTAAAATCTTGGCTCTTGAACTTAGC 702
Query 535 AGGAACAAGCTTACAGGT 552
|||||||| |||||||||
Sbjct 701 AGGAACAAACTTACAGGT 684
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52007764620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5