BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487504 Length=198 Score E Sequences producing significant alignments: (Bits) Value AT5G06890.1 | Symbols: | Ubiquitin-like superfamily protein | ... 261 2e-69 > AT5G06890.1 | Symbols: | Ubiquitin-like superfamily protein | chr5:2135743-2135943 FORWARD LENGTH=201 Length=201 Score = 261 bits (141), Expect = 2e-69 Identities = 180/199 (90%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 1 GTTTCTATTCCAAG-CTTGAATGATGAGCAAGTCATTGAGATCACAGTGCAGTCGTTGTC 59 |||||| |||| || | | ||||||| ||||||||||||||||||||||||||| || || Sbjct 4 GTTTCTGTTCC-AGACGTCAATGATGGGCAAGTCATTGAGATCACAGTGCAGTCCTTATC 62 Query 60 CGAAAACGTGGCAAGTTTGAAGGAGAAAGTGGCAAACAAACTCAAGTTCAGTGGAAAAGC 119 ||||||||||||||||||||| |||||||| ||||||||||| ||||| || |||||||| Sbjct 63 CGAAAACGTGGCAAGTTTGAAAGAGAAAGTAGCAAACAAACTGAAGTTAAGGGGAAAAGC 122 Query 120 CGGGCTTTTAAAGGACGACGACAAGTCACTTGCACATTACAATGTTCGAACAGGAGACAC 179 |||| ||||||||||||| |||||||||||||||||||||||||||||| |||| |||| Sbjct 123 CGGGATTTTAAAGGACGATGACAAGTCACTTGCACATTACAATGTTCGAGCAGGTGACAT 182 Query 180 CCTAACACTGTCTTTGTAA 198 |||||||||||||| |||| Sbjct 183 CCTAACACTGTCTTGGTAA 201 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 8802736425 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5