BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487504

Length=198
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G06890.1 | Symbols:  | Ubiquitin-like superfamily protein | ...   261    2e-69


> AT5G06890.1 | Symbols:  | Ubiquitin-like superfamily protein 
| chr5:2135743-2135943 FORWARD LENGTH=201
Length=201

 Score =  261 bits (141),  Expect = 2e-69
 Identities = 180/199 (90%), Gaps = 2/199 (1%)
 Strand=Plus/Plus

Query  1    GTTTCTATTCCAAG-CTTGAATGATGAGCAAGTCATTGAGATCACAGTGCAGTCGTTGTC  59
            |||||| |||| || | | ||||||| ||||||||||||||||||||||||||| || ||
Sbjct  4    GTTTCTGTTCC-AGACGTCAATGATGGGCAAGTCATTGAGATCACAGTGCAGTCCTTATC  62

Query  60   CGAAAACGTGGCAAGTTTGAAGGAGAAAGTGGCAAACAAACTCAAGTTCAGTGGAAAAGC  119
            ||||||||||||||||||||| |||||||| ||||||||||| ||||| || ||||||||
Sbjct  63   CGAAAACGTGGCAAGTTTGAAAGAGAAAGTAGCAAACAAACTGAAGTTAAGGGGAAAAGC  122

Query  120  CGGGCTTTTAAAGGACGACGACAAGTCACTTGCACATTACAATGTTCGAACAGGAGACAC  179
            |||| ||||||||||||| |||||||||||||||||||||||||||||| |||| |||| 
Sbjct  123  CGGGATTTTAAAGGACGATGACAAGTCACTTGCACATTACAATGTTCGAGCAGGTGACAT  182

Query  180  CCTAACACTGTCTTTGTAA  198
            |||||||||||||| ||||
Sbjct  183  CCTAACACTGTCTTGGTAA  201



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8802736425


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5