BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487508
Length=2453
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06930.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED IN... 3264 0.0
> AT5G06930.1 | Symbols: | LOCATED IN: chloroplast; EXPRESSED
IN: 15 plant structures; EXPRESSED DURING: 7 growth stages;
BEST Arabidopsis thaliana protein match is: nucleolar protein
gar2-related (TAIR:AT2G42320.2); Has 3369 Blast hits to 1526
proteins in 313 species: Archae - 2; Bacteria - 910; Metazoa
- 754; Fungi - 336; Plants - 137; Viruses - 11; Other Eukaryotes
- 1219 (source: NCBI BLink). | chr5:2144999-2148039
FORWARD LENGTH=2502
Length=2502
Score = 3264 bits (1767), Expect = 0.0
Identities = 2192/2391 (92%), Gaps = 54/2391 (2%)
Strand=Plus/Plus
Query 87 GATGAAGAGATTCGAGAGGCCAAGAACTTCGACTCACTCGCAGCCAAGAACCAGTACCAA 146
|||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 140 GATGAAAAGATTCGAGAGGCCAAGAACTTCGATTCACTCGCAGCCAAGGACCAGTACCAG 199
Query 147 TTCAGCG-AAGAAAGATCAGAAACCGCGTAGTAGTAGTA--AAGGGA-ATGGTTTGAAAC 202
||||| | |||||||||||||| |||||||||||||||| || ||| |||| ||||||
Sbjct 200 TTCAG-GTAAGAAAGATCAGAAGCCGCGTAGTAGTAGTAGTAAAGGATCTGGTGTGAAAC 258
Query 203 CGTTGAATGCGGCTCAGCTGGTTTCCAGAGTTTTAGATG---CGACTGCTTCTGAGCCTT 259
||||||||||||||||||||||||| ||||||||||||| | || |||||||||||||
Sbjct 259 CGTTGAATGCGGCTCAGCTGGTTTCTAGAGTTTTAGATGCAACAACAGCTTCTGAGCCTT 318
Query 260 CATCAATAGCTGTAACTGATTCAACTACTGGATCAGAGTCTTCTGAAGTCTATGACAATG 319
| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 319 CTTCAGTCGCTGTAACTGATTCAACTACTGGATCAGAGTCTTCTGAAGTCTATGAGAATG 378
Query 320 TGAATGTGCATTACATGGATGATGCTAATGATAAATCAAGAAATGATGGGAATCTGGTGG 379
||||||||||||||||||||||||||||||| |||||||||| |||||| ||||| ||||
Sbjct 379 TGAATGTGCATTACATGGATGATGCTAATGAGAAATCAAGAACTGATGGCAATCTAGTGG 438
Query 380 ATTGT---CAAGAAGAAGGTAATGGTGATGAATCAGACACTGAAACAAACAATGATTCTG 436
|||| |||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 439 GTTGTGAAGAAGAAGAAGGTAATGGTGATGAATCAGACACTGAGACAAACAATGGGTCTG 498
Query 437 TGTT-TTCTTCTCAAGGTGATTTGTTTTCCCATGAAGATAAGAAATCAGAAAGGCCATCA 495
| || || |||||| |||| ||||||||| |||||| |||||||||||||| ||||||
Sbjct 499 T-TTCTTGGTCTCAATGTGAACTGTTTTCCCCTGAAGAGAAGAAATCAGAAAGACCATCA 557
Query 496 ATGGTTTCCAAGAGCAAAAGCTCTCAGGATACACCCTTT-ACATCTAAAGGACGTACCAA 554
||||||||||| || |||||||||||||||| | ||||| ||||||||||||||||| ||
Sbjct 558 ATGGTTTCCAAAAGTAAAAGCTCTCAGGATAGA-CCTTTAACATCTAAAGGACGTACTAA 616
Query 555 CATTGGTGATTCGGTTAGATCTCGATCCAATACCTTCCACGGCT-CTGCTAGAAAGACCG 613
|||| |||||||||||||||||||||||||||||||||| | | ||||||||||||| |
Sbjct 617 TATTGCTGATTCGGTTAGATCTCGATCCAATACCTTCCACAG-TACTGCTAGAAAGACAG 675
Query 614 TAAGATCAAGTAAAAGTCAGGCAAAAGCTTTGTCTGAATTCTCATCTTATAGAAGCTCTG 673
||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 676 TAAGATCGAGTAAGAGTCAGGCAAAAGCTTTGTCTGATTTCTCCTCTTATAGAAGCTCTG 735
Query 674 AAAACAACAGGGCTCTCTCTCCTGCTTCACCAGTTGATTCCACGTCTTTTGAGGAGGCGA 733
||||||||| |||| ||||| ||||||||||||||||||| ||| |||||||||||| ||
Sbjct 736 AAAACAACAAGGCTTTCTCTTCTGCTTCACCAGTTGATTCAACGCCTTTTGAGGAGGGGA 795
Query 734 AAGAAGATGATGAGTTTGAAGATGCCTTGAATAGCGTTAATAACACTGAAAGTGACAATG 793
||||||||||||||||||||||||| |||||||||||| |||||| ||| ||||| ||||
Sbjct 796 AAGAAGATGATGAGTTTGAAGATGCTTTGAATAGCGTTCATAACAATGAGAGTGATAATG 855
Query 794 AAACACTTGTGTACAAGGAGAACAAAAGGAGTGAAGTGGAGAAAGTCTTAGCTCAAAAGA 853
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 856 AAACACTTGTGTACAAGGAGAAGAAAAGGAGTGATGTGGAGAAAGTCTTAGCTCAAAAGA 915
Query 854 TTGAGACCATGGAAACTCGAATCGAGAAACTTGAAGAAGAGCTGAGAGAAGTTGCTGCTC 913
|||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 916 TTGAGACCATGGAAGCTCGAATCGAGAAACTTGAAGAAGAGTTGAGAGAAGTGGCTGCTC 975
Query 914 TTGAGATGTCACTATACTCTGTATTTCCAGAACATGAGAGCTCATCACACAAGCTGCACA 973
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
Sbjct 976 TTGAGATGTCACTATACTCTGTATTTCCAGAACATGGGAGCTCATCACACAAGTTGCATA 1035
Query 974 AACCTGCAAGAGACCTTTCTAGACTCTATGCACTTGCTAGAAAAAATCAGAGTGAAAACA 1033
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 AACCTGCAAGAAATCTTTCTAGACTCTATGCACTTGCTAGAAAAAATCAGAGTGAAAACA 1095
Query 1034 AGTTAATCTCAGTAACCAAAAACATTGTGTCTGGTCTGTCCTTGTTGCTAAAATCCTCTG 1093
|| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1096 AGATAATCTCAGTAACCAAAAACATTGTGTCTGGTCTGTCCTTGTTGCTGAAATCCTGTG 1155
Query 1094 GAAGTGATGTATCGAGGTTAACTTACTGGTTGTCCAACACTGTCATGTTGCGAGAGATCA 1153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1156 GAAGTGATGTATCGAGGTTAACTTACTGGTTGTCCAACACTGTCATGTTGCGAGAGATCA 1215
Query 1154 TTTCACAGGAATTTGGTGGCACAAATCTAAAAGGACTAAATTCTCTTGAAGAAGATTGGA 1213
|||||| ||| |||||| || |||| ||||| ||| ||||||||||| |||||||||||
Sbjct 1216 TTTCACTGGATTTTGGTAGCTCAAAGCTAAATGGATTAAATTCTCTTAAAGAAGATTGGG 1275
Query 1214 CCAATGTGAGAACTCTGATAGTGGCATTAAGAAGAGTTGAATCATGTTTATTT-ACCCAA 1272
|||||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||
Sbjct 1276 GTGATGTGAGAACTCTGATAGCGGCATTAAGAAGAGTTGAATCATGTTT-TTTCACCCAA 1334
Query 1273 GCAGTTGAATCTATATGGTCACAGGTAATGATGGTTCATATGAGACCTCAAGGAGTAGAT 1332
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1335 GCAGTTGAATCTATCTGGTCACAGGTAATGATGGTTCATATGATACCTCAAGGAGTAGAC 1394
Query 1333 TCGACGATGGGTGAAATGATCGGTAATTTTTCAGAACCAGCAACATGTGACCGGTTACAA 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 TCGACGATGGGTGAAATGATCGGTAATTTTTCAGAACCAGCAACATGTGACCGGTTACAA 1454
Query 1393 GAGAGCTTTTCTGTTAACCTATGGAAA-AAGGCTTTTGAGGAGGCTCTTCAGCTGCTCTG 1451
||||||||||||||||||||||||||| ||| ||||||||||||||||||| | ||| ||
Sbjct 1455 GAGAGCTTTTCTGTTAACCTATGGAAAGAAG-CTTTTGAGGAGGCTCTTCAACGGCTATG 1513
Query 1452 TCCTGTTCAAGCAACAAGGCGTCAATGTGGTTGTTTGCATGTATTGATCAGAATGGTAAT 1511
||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||| ||
Sbjct 1514 TCCTGTTCAGGCAACAAGGCGTCAATGTGGTTGTTTGCATGTGTTGACCAGAATGGTTAT 1573
Query 1512 GGAGCAATGCATTGTAAGACTTGATGTGGCTATGTTCAATGCTATTCTCCGTGAGTGGGC 1571
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1574 GGAGCAATGCATTGTAAGACTTGATGTGGCTATGTTCAATGCTATTCTCCGTGAGTCGGC 1633
Query 1572 TCATCAGATACCGACAGACTCTGCCTCTGATCCCATTGCTGACTCAAGAGTTCTGCCAAT 1631
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1634 TCATCACATACCGACTGACTCTGCCTCTGATCCCATTGCTGACTCAAGAGTTCTGCCAAT 1693
Query 1632 TCCAGCAGGGGTTTTGAGCTTTGAATCTGGGGTGAAACTAAAAAACACGATTGGCTACTG 1691
|||||||||||||||||||||||||||||| || ||||| ||||||||| || | |||||
Sbjct 1694 TCCAGCAGGGGTTTTGAGCTTTGAATCTGGAGTAAAACTGAAAAACACGGTTAGTTACTG 1753
Query 1692 GTCGAGATTGCTGACAGACATCTTTGAGCTCGATGTTGATCATTCTTCGGAAAAGGAGCA 1751
|||||||||||| ||||||||||||| | ||| | ||| || | | | | |
Sbjct 1754 GTCGAGATTGCTTACAGACATCTTTG-G---GAT-T-GATG-TT----G-A---GCA--A 1796
Query 1752 ACAAATGCAAAGAGGAGATGAGACATTTAAACCTTTCCATTTGCTCAATGAACTGAGTGA 1811
| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1797 A-AAATGCAGAGAGGAGATGAGACATTTAAACCTTTCCACTTGCTCAATGAACTGAGTGA 1855
Query 1812 TCTCCTTATGCTTCCAAAAGAAATGCTTGTGGATAGTTCCACCAGAGATGAGGTCTGCCC 1871
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1856 TCTCCTTATGCTTCCAAAAGAAATGTTTGTGGACAGTTCCACCAGAGATGAGGTCTGCCC 1915
Query 1872 ATCAATTGGCCTGAGTTTGATAAAAAGGAT-GTTATGCAATTTCACCCCGGATGAATTTT 1930
|||||||||||||||||||||||||||||| || ||||||||||||||| |||||||| |
Sbjct 1916 ATCAATTGGCCTGAGTTTGATAAAAAGGATAGT-ATGCAATTTCACCCCCGATGAATTCT 1974
Query 1931 GCCCGTACCCTGTTCCAGGAACTGTTCTTGAGGAACTCAATGCTCAGAGCATACTTGAGA 1990
||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1975 GCCCGTATCCTGTTCCAGGAACTGTGCTTGAGGAACTCAACGCTCAGAGCATACTTGAGA 2034
Query 1991 GTAGAAGCTCATCTGGAGATGCAACTAGATGCTTTCCTCGGCAAGTCAATCCGGTTTCAT 2050
|||||||| |||| ||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 2035 ATAGAAGCTTATCTAGAGATACAGCTAGAGGCTTTCCTCGGCAAGTCAATCCGGTTTCAT 2094
Query 2051 ATTATC-TCCCTTCTTGTAGCCACTTGACAGACATTGTTGCAGAGTTCAGTGTCACACTT 2109
||| || ||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2095 ATTCTCCTCC-TTCTTGTAGCCACTTGACAGACATTGTTGCAGAGTTCAGTGTCAAACTT 2153
Query 2110 AAGCTTTCTATGACACaaaaaaaaGGATACAGCCGCAACGAGGAGGTAGAAACATCAAGA 2169
||||||||||||||||| ||||| ||||||||| |||||||| ||||||||||| |||||
Sbjct 2154 AAGCTTTCTATGACACACAAAAATGGATACAGCAGCAACGAGAAGGTAGAAACACCAAGA 2213
Query 2170 TCTCCTCCATACTACAACATCCTTAAAGGGGCTGAAGAAAAGGATA-CCATCAATTTTTC 2228
|||||||||||||||||| || | |||||||||| || ||||||| || ||||| ||||
Sbjct 2214 TCTCCTCCATACTACAACGTCATCAAAGGGGCTGTAGCGAAGGATAACC-TCAATCTTTC 2272
Query 2229 TCAGACTAACGAAAGATACAGACTCCTTGGAG---CCTAAACCTGGCTTAAATGACCAGA 2285
| ||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 2273 TGAGACTAATGAAAGATACAGACTCCTTGGAGAAGCCTAAACCTGGCTTAAATTACCAGA 2332
Query 2286 AAGCGCCTGCAGAAATTC-AAAGCTCATTGGGAAGTACACTCAAAA-TCCAATTCTTATT 2343
||| |||||| ||||||| ||| || || |||||||||| | |||| |||||||||||||
Sbjct 2333 AAGTGCCTGCGGAAATTCCAAA-CTTATCGGGAAGTACATT-AAAAGTCCAATTCTTATT 2390
Query 2344 ATCCTTGAACATCAAATGACCAATGTACATTAATACATACTCGTA-TGTTACACAAACAA 2402
||||||||| |||||||||||||||||||||| ||||||||| || ||||||||||||||
Sbjct 2391 ATCCTTGAAGATCAAATGACCAATGTACATTACTACATACTC-TAATGTTACACAAACAA 2449
Query 2403 AACATACCATCTTGCTCTTGGACCGTTTCAATAAAAGCTTCATTTTTGAGT 2453
|||||||||||||||||||||||| |||| |||||||||| ||||||||||
Sbjct 2450 AACATACCATCTTGCTCTTGGACCATTTCCATAAAAGCTTGATTTTTGAGT 2500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 121705003718
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5