BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487509
Length=2586
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06940.1 | Symbols: | Leucine-rich repeat receptor-like pro... 3598 0.0
> AT5G06940.1 | Symbols: | Leucine-rich repeat receptor-like protein
kinase family protein | chr5:2148078-2150771 REVERSE
LENGTH=2619
Length=2619
Score = 3598 bits (1948), Expect = 0.0
Identities = 2198/2320 (95%), Gaps = 12/2320 (1%)
Strand=Plus/Plus
Query 1 ATGGCTACCAGATTCAAGCACCAATTCTCAATCTCACTAGCCTTCACA---TTCTTCTTC 57
||||||||||||||||||||||| || ||||||||||||||||| ||| |||||||||
Sbjct 1 ATGGCTACCAGATTCAAGCACCAGTTTTCAATCTCACTAGCCTTGACATTCTTCTTCTTC 60
Query 58 TTCACCAAGACCTTCTCTTTCACAGA-AACCGAGGAACTTGGTAATCTTCTCAGATTCAA 116
|||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||
Sbjct 61 TTCACCAAGACCTTCTCTTTCACAGAGAA-CGAGGAACTTGGTAACCTTCTCAGATTCAA 119
Query 117 AGCCTCCATTGATGATCCAAAGGGCTCTCTTTCAGGTTGGTTAAACACTTCTTCTTCTCA 176
||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||| ||
Sbjct 120 AGCCTCCTTTGATGATCCAAAAGGCTCTCTTTCAGGTTGGTTTAACACTTCTTCTTCGCA 179
Query 177 CCATTGTAACTGGACTGGTATCACATGTACCAGAGCTCCTTCTCTTTACGTCTCTTCCAT 236
|||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 180 CCATTGTAACTGGACTGGTATCACATGTACTAGAGCTCCTACTCTTTACGTCTCTTCCAT 239
Query 237 TAATCTTCAAAGTTTGAATCTTTCTGGTGAAATCTCTGACTCCATTTGTGACCTCCCTTA 296
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TAACCTTCAAAGTTTGAATCTTTCTGGTGAAATCTCTGACTCCATTTGTGACCTCCCTTA 299
Query 297 CCTCACTCACCTTGACCTCTCCTTAAACTTCTTCAATCAGCCAATCCCACTTCATTTGTC 356
|||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||
Sbjct 300 CCTCACTCACCTTGACCTCTCCTTGAACTTCTTCAATCAGCCTATCCCACTTCAGTTGTC 359
Query 357 TCGTTGTCTTACTTTAGAGACTCTTAATCTCAGCTCTAATCTCATTTGGGGCACAATCCC 416
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 TCGTTGTGTTACTTTAGAGACTCTTAATCTCAGCTCTAATCTCATCTGGGGCACAATCCC 419
Query 417 TGATCAGATTTCTGAGTTTAGTTCCTTGAAAGTTCTTGACTTTAGCAGCAACCATGTCGA 476
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 420 TGATCAGATTTCTGAGTTTAGTTCCTTGAAAGTTATTGACTTTAGCAGTAACCATGTCGA 479
Query 477 GGGTAAGATTCCTGAAGATTTAGGGTTATTGTTCAATCTGCAAGTTCTCAACTTGGGAAG 536
|||| |||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 480 AGGTATGATTCCAGAAGATTTAGGGTTATTGTTTAATCTCCAAGTTCTCAACTTGGGAAG 539
Query 537 TAATTTGCTTACTGGTATCGTTCCTTCTGCAATTGGGAAGCTAAGTGAGCTCGTTGTTCT 596
||||||||| ||||||||||| ||| |||| |||||||||||||||||||| ||||||||
Sbjct 540 TAATTTGCTCACTGGTATCGTCCCTCCTGCTATTGGGAAGCTAAGTGAGCTTGTTGTTCT 599
Query 597 TGATTTGTCTGCAAACAGCTATTTGGTTAGTGAGATTCCTTCTTTTATTGGGAAACTAGA 656
||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 600 TGATTTGTCTGAAAACAGCTATTTGGTTAGTGAGATTCCTTCTTTTCTTGGGAAGCTAGA 659
Query 657 CAAGCTTGAACAGCTTCTGTTGCATAGGTCAGGGTTCCATGGAGAGATTCCCT-CTTCGT 715
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 660 CAAGCTTGAACAGCTTCTGTTGCATAGGTCAGGGTTCCATGGAGAGATT-CCTACTTCGT 718
Query 716 TTGATGGTTTGACAAGTTTGAAAACGTTGGATCTGTGTCTGAACAACCTGAGTGGTGAGA 775
||| ||||||||||||||||| ||| ||||||||| || |||||||||||||||||||||
Sbjct 719 TTGTTGGTTTGACAAGTTTGAGAACCTTGGATCTGAGTTTGAACAACCTGAGTGGTGAGA 778
Query 776 TTCCTCGATCGGTAGGGCCTTCTCTCAAAAACTTAGTGTCTCTTGATGTCTCACAGAATA 835
|||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 779 TTCCTCGATCATTAGGCCCTTCTCTCAAGAACTTAGTGTCTCTTGATGTCTCACAGAATA 838
Query 836 AGTTATCTGGCTCTTTCCCTAGTGGCATTTGCAGTGGTAAAAGGCTCATTAACCTTTCTC 895
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 839 AGTTATCTGGCTCTTTCCCTAGTGGCATTTGCAGTGGTAAAAGGCTTATTAACCTTTCTC 898
Query 896 TGCATTCGAATTTCTTTGAAGGGTCATTGCCTAACTCCATTGGTGAATGCCTTAGTCTGG 955
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TCCACTCGAATTTCTTTGAAGGGTCATTGCCTAACTCCATTGGTGAATGCCTTAGTCTGG 958
Query 956 AGATGTTTCAAGTGCAGAACAATGGATTCTCTGGTGAGTTTCCAGTTGTGTTATGGAAAT 1015
||| | |||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 959 AGAGGCTTCAAGTGCAGAACAATGGATTTTCTGGTGAGTTTCCAGTTGTGTTGTGGAAAT 1018
Query 1016 TACCCAAGATTAAGATTATTAGAGCGGATAATAATCGGTTCACAGGTCAAGTGCCTGATT 1075
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1019 TACCCAGGATTAAGATTATTAGAGCGGATAATAATCGGTTCACAGGTCAAGTGCCAGAGT 1078
Query 1076 CTGTGTCTTTGGCTTCTGCATTGGAGCAAGTTGAGATAGACAACAATTCTTTTTCTGGTG 1135
||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1079 CTGTGTCTTTGGCTTCTGCATTGGAGCAAGTTGAGATAGTCAACAATTCCTTTTCTGGTG 1138
Query 1136 AAATCCCACATGGTCTTGGACTGGTTAAGAGCTTGTACAAGTTTTCTGCTTCAGAAAACG 1195
|||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||
Sbjct 1139 AAATCCCACATGGTCTTGGATTGGTTAAGAGCTTGTATAAGTTTTCTGCTTCACAAAACC 1198
Query 1196 GGTTTGGTGGGGAGTTACCGCCGAATTTTTGTGACTCACCTGTTCTTAGTATTGTAAACA 1255
||||| |||| |||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1199 GGTTTAGTGGAGAGTTACCGCCGAATTTTTGCGACTCACCTGTCCTTAGTATTGTAAACA 1258
Query 1256 TCTCTCACAATAGGCTCTTAGGGAAGATCCCAGAACTGAAGAATTGCAAGAAGCTTGTCT 1315
|||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 1259 TCTCTCACAATAGGCTCTTAGGAAAGATCCCAGAACTGAAAAACTGCAAGAAGCTTGTCT 1318
Query 1316 CTTTGTCTCTAGCAGGCAATGCATTTACTGGAGAAATCCCGCCATCACTTGCTGATTTAC 1375
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1319 CTTTGTCTCTAGCAGGCAATGCATTCACCGGAGAAATCCCGCCATCACTTGCTGATTTAC 1378
Query 1376 ATGTTCTGACTTATCTTGATCTATCTGATAATAGTCTTACTGGTTTGATTCCTCCAGACT 1435
|||||||||| |||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 1379 ATGTTCTGACCTATCTTGATCTATCTGATAATAGTCTTACTGGTTTGATCCCTCAAGGCT 1438
Query 1436 TACAGAACCTGAAGCTTGCTCTCTTCAACGTGTCATTCAATAGATTATCAGGTGAGGTAC 1495
|||||||||| ||||||||||| || ||||||||||||||| ||||||||||||||||||
Sbjct 1439 TACAGAACCTAAAGCTTGCTCTTTTTAACGTGTCATTCAATGGATTATCAGGTGAGGTAC 1498
Query 1496 CTCACTCTCTGGTTTCCGGGTTACCAGCTTCCTTTCTGCAAGGAAATCCCGAGCTTTGTG 1555
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1499 CTCACTCTCTGGTCTCCGGGTTACCAGCTTCCTTTCTGCAAGGAAATCCTGAGCTTTGTG 1558
Query 1556 GACCCGGTTTACCCAATTTTTGCTCCTCTGATCGGTCTAACTTCCATAAAAAAGGTGGTA 1615
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GACCCGGTTTACCCAATTCTTGCTCCTCTGATCGGTCTAACTTCCATAAAAAAGGTGGTA 1618
Query 1616 AAGCGTTGGTGCTAGCTTTGATATGTTTAGCATTTGCTATTGCCACTTTACTCGCGGTGT 1675
||||||||||| || ||||||||||||||||| |||||||||||||||| || |||||||
Sbjct 1619 AAGCGTTGGTGTTATCTTTGATATGTTTAGCACTTGCTATTGCCACTTTCCTTGCGGTGT 1678
Query 1676 TATATCGGTATTTTCGAAAGAAAGCGCAATTTAAGAGTACTTGGCGCTCAGAGTTTTATT 1735
||||||| |||| ||||||||||| |||||| ||||||||||||||||| ||||||||||
Sbjct 1679 TATATCGTTATTCTCGAAAGAAAGTGCAATTCAAGAGTACTTGGCGCTCGGAGTTTTATT 1738
Query 1736 ATCCCCTCAAGTTAACCGAGCATGAGTTGATGAAAGTGGTGAATG-AA--TGTCCTTCCG 1792
||||| |||||||||| |||||||||||||||||||||||||||| || ||||||||||
Sbjct 1739 ATCCCTTCAAGTTAACTGAGCATGAGTTGATGAAAGTGGTGAATGAAAGTTGTCCTTCCG 1798
Query 1793 GGAGTGAAGTATACGTTCTCAGTTTATCAAGTGGGGAGTTAATAGCTGTGAAGAAGCTTG 1852
| |||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 1799 GAAGTGAAGTATACGTTCTCAGTTTATCTAGTGGGGAGTTATTAGCTGTGAAGAAGCTTG 1858
Query 1853 TGAATTCTAAGAATATATCCTCGAAAGCTCTGAAAGCTCAAGTGAGAAGCATAGCAAAGA 1912
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 1859 TGAATTCTAAGAATATATCCTCGAAATCTCTGAAAGCTCAAGTGAGAACCATAGCAAAGA 1918
Query 1913 TACGGCATAAGAACATTACTCGAATTCTTGGGTTTTGTTTCACTGATGA-ATTGATCTTC 1971
||||||||||||||||||||||||||||||||||||| |||| || || | ||||||||
Sbjct 1919 TACGGCATAAGAACATTACTCGAATTCTTGGGTTTTGCTTCAAAGACGAGA-TGATCTTC 1977
Query 1972 TTGATCTATGAGTTCACACAAAATGGTAGCTTACATGATATACTATCGAGACCTGGCGAC 2031
||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1978 TTGATCTATGAATTCACACAAAATGGTAGCTTACATGATATGCTATCGAGAGCTGGCGAC 2037
Query 2032 CAACTTCCGTGGAGCATTAGATTGAAGATAGCGCTAGGTGTTGCTCAAGCATTGGCATAC 2091
||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 2038 CAACTGCCGTGGAGTATTAGGTTGAAGATAGCACTAGGTGTTGCTCAAGCATTGGCTTAC 2097
Query 2092 ATTAGCAAAGATTATGTGCCACACTTACTCCATAGGAACCTAAAGTCAGCAAACATTCTC 2151
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 2098 ATTAGCAAAGACTATGTGCCACACTTACTCCATAGGAACCTAAAATCAGCAAACATTTTC 2157
Query 2152 TTGGACAAAGATTTCGAACCCAAGCTCTCTGATTTTGCTCTTGACCATATCGTTGGAGAA 2211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2158 TTGGACAAAGATTTCGAACCCAAGCTCTCTGATTTTGCTCTTGACCATATCGTTGGAGAA 2217
Query 2212 ACTGCTTTTCAGTCTCTGGTACATGCAAACTCCAACTCCTGCTATACTGCACCAGAAAAC 2271
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2218 ACTGCTTTTCAGTCTCTGGTACATGCAAACACCAACTCCTGCTATACTGCACCAGAAAAC 2277
Query 2272 AATTACAGCAAGAAAGCAACAGAAGATATGGATGTTTACA 2311
|||||||||||||||||||||||||||||||||||||||
Sbjct 2278 CATTACAGCAAGAAAGCAACAGAAGATATGGATGTTTACA 2317
Score = 361 bits (195), Expect = 2e-98
Identities = 222/235 (94%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 2320 GAAGAAGGCGCATCTAGGGAGTCCCTTGACATAGTGAAGCAGGTCAGGAGGAAGATAAAC 2379
||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2371 GAAGAAGGCTCTTCTGGGGAGTCCCTTGACATAGTGAAGCAGGTCAGGAGGAAGATAAAC 2430
Query 2380 CTGACAGATGGAGCTGGGCAAGTTCTTGACCAAAAGATCTTGTCCGATTCTTGCCAATCA 2439
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2431 CTGACAGATGGAGCTGCACAAGTTCTTGACCAAAAGATCTTGTCCGATTCTTGCCAATCA 2490
Query 2440 GAGATGCTAAAGACCTTAGATATTGCTCTAGATTGTACCGCCGTTGCTGCAGAGAAACGA 2499
|| |||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 2491 GACATGCGAAAGACCTTAGACATTGCTCTAGATTGCACCGCCGTTGCTGCAGAGAAACGA 2550
Query 2500 CCTTCATTGGTTCAAGTTATTAAAGC-GCTTGAGGGTATTAGTTCTTCTGTCTCA 2553
|||||| ||||| ||||||||||| | ||||||||||||||||||||||||||||
Sbjct 2551 CCTTCACTGGTTAAAGTTATTAAA-CTGCTTGAGGGTATTAGTTCTTCTGTCTCA 2604
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128377207137
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5