BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487510
Length=1623
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06950.1 | Symbols: AHBP-1B, TGA2 | bZIP transcription facto... 2457 0.0
AT3G12250.4 | Symbols: TGA6, BZIP45 | TGACG motif-binding facto... 1072 0.0
> AT5G06950.1 | Symbols: AHBP-1B, TGA2 | bZIP transcription factor
family protein | chr5:2151025-2154553 FORWARD LENGTH=1649
Length=1649
Score = 2457 bits (1330), Expect = 0.0
Identities = 1555/1654 (94%), Gaps = 54/1654 (3%)
Strand=Plus/Plus
Query 1 GTCTCGGAGATTGGAATTTCGGATCGTGTCTCTCTCTGCTTCTTCTTTGTTTCAATCCGA 60
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1 GTCTCGGAGATTGGAATTTCGGATCGTGTCTCTCTCTG--T-TTCTTTGTTTCAATCCGA 57
Query 61 TTCCGAATCAAACCCTTTACTTCTGCTCC-TCAAAGATTTCGTTTTTCCAGCACAGCCAA 119
|| |||||||| |||||||||| ||| || || ||||||||||||||||||| |||||||
Sbjct 58 TTTCGAATCAAGCCCTTTACTTGTGCACCTTC-AAGATTTCGTTTTTCCAGCGCAGCCAA 116
Query 120 TGGTCCGGATGATCAACATTTGTTCTTGATTCATTTCCTATTGATTCTTATTGTCTGTGC 179
|| ||||| ||| |||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 117 TGCTCCGGGTGACCAACATTTGTTCCTGATTCATTTCCTATTGATTCGTATTGTCTGTGC 176
Query 180 ACACTAA-AG-AATTCTCAAGAAGTTGTTACTAAAAGAGAGGCCACAAGTGGATATTGTC 237
|||| || || |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 177 ACAC-AAGAGAAATT-TCAAGAAGTTGTTACTAAAAGAGAGGCCACAAGTGGATATTGTC 234
Query 238 TTTGTTATCAAGTGTTAGTACAGAAAAGTGGTGAGAAAGTAATATGGCTGATACCAGTCC 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TTTGTTATCAAGTGTTAGTACAGAAAAGTGGTGAGAAAGTAATATGGCTGATACCAGTCC 294
Query 298 GCGAACTGATGTCTCAACAGATGAAGACACAGATCATCCTGATCTTGGGTCGGAGGGAGC 357
| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 295 GAGAACTGATGTCTCAACAGATGACGACACAGATCATCCTGATCTTGGGTCGGAGGGAGC 354
Query 358 ACTAGTGAATAATGCTGCTTCTGATTCGAGTGACCGATCGAAGGGCAAGATGGATCAAAA 417
||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 355 ACTAGTGAATACTGCTGCTTCTGATTCGAGTGACCGATCGAAGGGAAAGATGGATCAAAA 414
Query 418 GACCCTTCGTAGGCTTGCTCAAAACCGTGAGGCAGCAAGGAAAAGCAGATTGAGGAAGAA 477
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GACTCTTCGTAGGCTTGCTCAAAACCGTGAGGCAGCAAGGAAAAGCAGATTGAGGAAGAA 474
Query 478 GGCGTATGTTCAGCAGCTGGAGAACAGCCGCTTGAAACTTACCCAGCTTGAGCAGGAGCT 537
||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 475 GGCTTATGTTCAGCAGCTAGAGAACAGCCGCTTGAAACTAACCCAGCTTGAGCAGGAGCT 534
Query 538 GCAAAGAGCAAGACAGCAGGGCGTCTTCATTTCAAGCACAGGAGACCAAGCCCATGCTAC 597
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||
Sbjct 535 GCAAAGAGCAAGACAGCAGGGCGTCTTCATTTCAGGCACAGGAGACCAGGCCCATTCTAC 594
Query 598 TGGTGGAAATGGTGCTTTGGCGTTTGATGCTGAACACTCACGGTGGCTGGAAGAAAAGAA 657
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 595 TGGTGGAAATGGTGCTTTGGCGTTTGATGCTGAACATTCACGGTGGTTGGAAGAAAAGAA 654
Query 658 CAAGCAAATGAACGAGCTGAGGTCTGCTCTGAATGCGCATGCAGGTGATTCTGAGCTTCG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 CAAGCAAATGAACGAGCTGAGGTCTGCTCTGAATGCGCATGCAGGTGATTCTGAGCTTCG 714
Query 718 AATAATAGTCGATGGTGTGATGGCTCACTATGAAGAGCTTTTCAGGATAAAGAGCAATGC 777
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 715 AATAATAGTCGATGGTGTGATGGCTCACTATGAGGAGCTTTTCAGGATAAAGAGCAATGC 774
Query 778 AGCTAAGAATGATGTCTTTCACTTGCTATCTGGCATGTGGAAAACACCAGCTGAAAGATG 837
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 775 AGCTAAGAATGATGTCTTTCACTTGCTATCTGGCATGTGGAAAACACCAGCTGAGAGATG 834
Query 838 TTTCTTGTGGCTTGGTGGCTTTCGTTCATCCGAACTTCTCAAGCTTCTGGCGAATCAGTT 897
|||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 835 TTTCTTGTGGCTCGGTGGATTTCGTTCATCCGAACTTCTAAAGCTTCTGGCGAATCAGTT 894
Query 898 GGAGCCAATGACAGAGAGACAGTTGATGGGCATAAATAACTTGCAACAGACATCGCAGCA 957
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 895 GGAGCCAATGACAGAGAGACAGTTGATGGGCATAAATAACCTGCAACAGACATCGCAGCA 954
Query 958 GGCTGAAGATGCTTTGTCTCAAGGGATGGAGAGCTTACAACAGTCTCTAGCTGATACTTT 1017
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 955 GGCTGAAGATGCTTTGTCTCAAGGGATGGAGAGCTTACAACAGTCACTAGCTGATACTTT 1014
Query 1018 ATCGAGCGGGACTCTTGGTTCAAGCTCATCAGGGAATGTGGCGAGCTACATGGGTCAGAT 1077
|||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 1015 ATCGAGCGGGACTCTTGGTTCAAGTTCATCAGGGAATGTCGCAAGCTACATGGGTCAGAT 1074
Query 1078 GGCCATGGCAATGGGAAAGTTAGGTACCCTCGAAGGATTTATTCGCCAGGCTGATAATTT 1137
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1075 GGCCATGGCAATGGGAAAGTTAGGTACACTCGAAGGATTTATCCGCCAGGCTGATAATTT 1134
Query 1138 GAGACTACAAACATTGCAACAGATGATAAGAGTATTAACAAC-ACGACAGTCAGCGCGTG 1196
|||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||
Sbjct 1135 GAGACTACAAACATTGCAACAGATGATAAGAGTATTAACAACGA-GACAGTCAGCACGTG 1193
Query 1197 CTCTACTTGCAATTCATGATTACTTCTCACGGCTACGAGCTCTTAGCTCCTTATGGCTTG 1256
||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1194 CTCTACTTGCAATACACGATTACTTCTCACGGCTACGAGCTCTAAGCTCCTTATGGCTTG 1253
Query 1257 CTCGACCCAGAGAGTGAAACTGTATTTTGGTCACTATCAGTCAGCTGTACAAAATCCATA 1316
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 1254 CTCGACCCAGAGAGTGAAACTGTATTTTGGTCAC-AT--GTCAGCTGTACAAAATCCATA 1310
Query 1317 TGGGACACAAA-CCAGGAGAGACTATTAATCAACACTTGTCAGAGATTCTTCTTACCAAA 1375
||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1311 TGG-ACACAAAACCAGGAGAGACTATTAATCAACACTTGTCAGA--TTCTTCTTACCAAA 1367
Query 1376 TCCATCAACAAATAAGCAAATTTCTGGGAAACAAA----T-T--------------CT-- 1414
||||||||||||||||||||||||||||||||||| | | ||
Sbjct 1368 TCCATCAACAAATAAGCAAATTTCTGGGAAACAAAAGACTCTTTGTATGTAGGTTTCTTC 1427
Query 1415 -ACATGGTTGTGGTAATTCATGTTGTTTTAGCTGTAGCCTTCAGTTTTTAATTTAGCATT 1473
|||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||
Sbjct 1428 TACATGGTTGTGGTAATTCATGTTGTTTTAGTTGTAGTCATCAGTTTTTAATTTAGCATT 1487
Query 1474 TAAAAAGTTCAATGTT-TATATAT--CATCTTCGATTATCTTAGAAAGGTTATTGAAttt 1530
| |||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 1488 TGAAAAGTTCAATGTTGTTTATATAGCATCTTCGATTATCTTAGAAAGGTTATTGAATTT 1547
Query 1531 ttgtttgttttttttttGTTACTTT-GTGTGTGGTAAAGGTGTTTTAACCTTGCAACTTC 1589
| |||| |||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1548 T-GTTT-TTTTTT----GTTACTTTTGTGTGTGGTAAAGGTGTTTTAACCTTGCAACTTC 1601
Query 1590 TGTACTTGTAATCATCATTTAACAATATAAAGAT 1623
|||||| |||||||| || |||||||| |||||
Sbjct 1602 TGTACT-GTAATCAT--TT-AACAATATTAAGAT 1631
> AT3G12250.4 | Symbols: TGA6, BZIP45 | TGACG motif-binding factor
6 | chr3:3906351-3908583 FORWARD LENGTH=1068
Length=1068
Score = 1072 bits (580), Expect = 0.0
Identities = 800/908 (88%), Gaps = 8/908 (1%)
Strand=Plus/Plus
Query 370 TGCTGCTTCTGATTCGAGTGACCGATCGAAGGGCAAGATGGATCAAAAGACCCTTCGTAG 429
|||||| |||||||| ||||| ||||| |||| ||| ||||||||||||||||||||||
Sbjct 165 TGCTGCCTCTGATTCCAGTGATCGATCAAAGGATAAGTTGGATCAAAAGACCCTTCGTAG 224
Query 430 GCTTGCTCAAAACCGTGAGGCAGCAAGGAAAAGCAGATTGAGGAAGAAGGCGTATGTTCA 489
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 225 GCTTGCTCAAAATCGTGAGGCAGCAAGAAAAAGCAGATTGAGGAAGAAGGCGTATGTTCA 284
Query 490 GCAGCTGGAGAACAGCCGCTTGAAA-CTTACCCAGCTTGAGCAGGAGCTGCAAAGAGCAA 548
|||||||||||| || || || ||| || || || |||||||||||||||||||||||||
Sbjct 285 GCAGCTGGAGAATAGTCGATT-AAAGCTGACTCAACTTGAGCAGGAGCTGCAAAGAGCAA 343
Query 549 GACAGCAGGGCGTCTTCATTTCAAGCACAGGAGACCAAGCCCATGCTACTGGTGGAAATG 608
|||||||||| || ||||| ||||| ||||||||||||| ||| |||||||||| ||||
Sbjct 344 GACAGCAGGGAGTTTTCATCTCAAGTTCAGGAGACCAAGCTCATTCTACTGGTGGCAATG 403
Query 609 GTGCTTTGGCGTTTGATGCTGAACACTCACGGTGGCTGGAAGAAAAGAACAAGCAAATGA 668
| |||||||| |||||||| ||||||||||| ||||| ||||||||||||| ||||||||
Sbjct 404 GGGCTTTGGCATTTGATGCAGAACACTCACGATGGCTTGAAGAAAAGAACAGGCAAATGA 463
Query 669 ACGAGCTGAGGTCTGCTCTGAATGCGCATGCAGGTGATTCTGAGCTTCGAATAATAGTCG 728
|||||||||| ||||| |||||||| |||||||||||| ||||||| || ||||| || |
Sbjct 464 ACGAGCTGAGATCTGCCCTGAATGCTCATGCAGGTGATACTGAGCTCCGGATAATTGTGG 523
Query 729 ATGGTGTGATGGCTCACTATGAAGAGCTTTTCAGGATAAAGAGCAATGCAGCTAAGAATG 788
|||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 524 ATGGAGTGATGGCTCACTATGAGGAGCTTTTCAGGATTAAGAGCAATGCAGCTAAGAATG 583
Query 789 ATGTCTTTCACTTGCTATCTGGCATGTGGAAAACACCAGCTGAAAGATGTTTCTTGTGGC 848
||||||| |||||| ||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 584 ATGTCTTCCACTTGTTATCTGGAATGTGGAAAACACCAGCTGAGCGATGTTTCTTGTGGC 643
Query 849 TTGGTGGCTTTCGTTCATCCGAACTTCTCAAGCTTCTGGCGAATCAGTTGGAGCCAATGA 908
|||| || || || ||||||||||||||||||||||| ||||||||| | ||||| ||||
Sbjct 644 TTGGCGGGTTCCGCTCATCCGAACTTCTCAAGCTTCTTGCGAATCAGCTAGAGCCCATGA 703
Query 909 CAGAGA-GACAGTTGATGGGCATAAATAACTTGCAACAGACATCGCAGCAGGCTGAAGAT 967
|||| | ||||| | |||||||| |||| |||||| ||||| ||||||||||| ||||||
Sbjct 704 CAGA-ACGACAGGTAATGGGCATCAATAGCTTGCAGCAGACGTCGCAGCAGGCAGAAGAT 762
Query 968 GCTTTGTCTCAAGGGATGGAGAGCTTACAACAGTCTCTAGCTGATACTTTATCGAGCGGG 1027
||||| ||||||||||||||||| ||||| || || ||||||||||||||||| || ||
Sbjct 763 GCTTTATCTCAAGGGATGGAGAGTTTACAGCAATCCCTAGCTGATACTTTATCCAGTGGA 822
Query 1028 ACTCTTGGTTCAAGCTCATCAGGG-AATGTGGCGAGCTACATGGGTCAGATGGCCATGGC 1086
||||||||||| || ||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 823 ACTCTTGGTTCCAGTTCATC-GGATAATGTCGCGAGCTACATGGGTCAGATGGCCATGGC 881
Query 1087 AATGGGAAAGTTAGGTACCCTCGAAGGATTTATTCGCCAGGCTGATAATTTGAGACTACA 1146
|||||| ||||||| |||||||||||||| || |||||||||||||| ||||| || ||
Sbjct 882 AATGGGGCAGTTAGGCACCCTCGAAGGATTCATACGCCAGGCTGATAACTTGAGGCTGCA 941
Query 1147 AACATTGCAACAGATGATAAGAGTATTAACAACACGACAGTCAGCGCGTGCTCTACTTGC 1206
|||| | ||||||||| | |||||||||||||||| |||||||| |||||||| |||||
Sbjct 942 AACACTACAACAGATGCTTCGAGTATTAACAACACGTCAGTCAGCTCGTGCTCTTCTTGC 1001
Query 1207 AATTCATGATTACTTC-TCACGGCTACGAGCTCTTAGCTCCTTATGGCTTGCTCGACCCA 1265
|| || ||||| ||| || || |||| |||||||| ||||| |||||||| || || |
Sbjct 1002 TATACACGATTA-TTCATCTCGATTACGTGCTCTTAGTTCCTTGTGGCTTGCCCGGCCAA 1060
Query 1266 GAGAGTGA 1273
||||||||
Sbjct 1061 GAGAGTGA 1068
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80170270365
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5