BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487519
Length=889
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06990.1 | Symbols: | Protein of unknown function, DUF617 |... 1280 0.0
> AT5G06990.1 | Symbols: | Protein of unknown function, DUF617
| chr5:2169602-2170606 FORWARD LENGTH=1005
Length=1005
Score = 1280 bits (693), Expect = 0.0
Identities = 849/919 (92%), Gaps = 32/919 (3%)
Strand=Plus/Plus
Query 1 TTTTTTGTAATGGCAACACCACCGTTAACGCCTAGAATGCTGACTCCGACGACAATGTCG 60
|||||||||||||||||||||||||||||||| |||||| ||||||| || |||||||||
Sbjct 89 TTTTTTGTAATGGCAACACCACCGTTAACGCCAAGAATGATGACTCCAACAACAATGTCG 148
Query 61 CCTCTCGGGAGTCCAAAGTCGAAGAAATCAACGGCGACGGTACGTCCGGAGATCACGTTG 120
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 149 CCTCTCGGGAGTCCAAAGTCGAAGAAGTCAACGGCGACGGTACGACCGGAGATCACGTTG 208
Query 121 GAGCAACCGTCTGGAAGAAACAAAACAGCCGGCTCCAAATCGACTAAACTCTTCCGACGC 180
|||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 209 GAGCAACCATCTGGAAGAAACAAAACAACCGGCTCCAAATCGACGAAACTCTTCCGACGT 268
Query 181 GTCCGGTCTGTGTTCCGATCTCTACCGATCATGTCTCCGATGTGTAAATTCCCCGT---A 237
|| ||||||||||| |||| || |||||||||||||||||||||||||| ||||| |
Sbjct 269 GTTAGGTCTGTGTTCAGATCACTTCCGATCATGTCTCCGATGTGTAAATTTCCCGTAGGA 328
Query 238 GGAGGAGGACGACTCCACGAAAATCACGTTCACGGAGGGACACGTGTCACGGGAACGCTG 297
||||||||| |||||||||| ||||||||||| ||||| |||||||||||||||||| ||
Sbjct 329 GGAGGAGGAAGACTCCACGAGAATCACGTTCATGGAGGAACACGTGTCACGGGAACGTTG 388
Query 298 TTTGGTTACCGCAAAACACGTGTGAATTTAGCGGTTCAAGAAAATCCGCGTTCTTTACCG 357
||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 389 TTTGGTTACCGCAAAACGCGTGTGAATCTAGCGGTTCAAGAGAATCCGCGTTCTTTACCG 448
Query 358 ATTCTGTTACTGGAGCTAGCGATTCCCAC-GGGAAAGCTTCTTCAAGATCTTGGAGTCGG 416
||||| ||| ||||| |||||||||| || |||||| |||||||||||||||||||||||
Sbjct 449 ATTCTTTTATTGGAGTTAGCGATTCCAACGGGGAAA-CTTCTTCAAGATCTTGGAGTCGG 507
Query 417 TTTAGTGAGAATCGCATTGGAATGCGAGAAGAAACCGAGCGAGAAAACCAAAATCATTGA 476
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 508 TTTAGTGAGAATCGCGTTGGAATGCGAGAAGAAACCGAGCGAGAAAACCAAAATCATTGA 567
Query 477 CGAACCGATTTGGGCATTGTATTGTAACGGTAAGAAATCTGGTTATGGTGTGAAGAGACA 536
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 CGAACCGATTTGGGCGTTGTATTGTAACGGTAAGAAATCTGGTTATGGTGTGAAGAGACA 627
Query 537 ACCAACGGAAGAGGATCTTGTGGTGATGCAGATGCTTCATGCTGTGTCGATGGGAGCTGG 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 ACCAACGGAAGAGGATCTTGTGGTGATGCAGATGCTTCATGCTGTGTCGATGGGAGCTGG 687
Query 597 TGTGTTACCGGTGAGCAGTGGTGCGA-C--GGAGCAAAGCGGCGGAGGAGGAGGAGGACA 653
||| ||||||||||||||||| |||| | ||||||||||||||||||||||||||||||
Sbjct 688 TGTTTTACCGGTGAGCAGTGGCGCGATCACGGAGCAAAGCGGCGGAGGAGGAGGAGGACA 747
Query 654 ACAAGAAGGAGATTTGACGTACATGAGAGCACATTTCGAGAGAGTGATTGGGTCAAGAGA 713
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 748 ACAAGAAGGAGATTTGACGTATATGAGAGCACATTTCGAGAGAGTGATTGGGTCAAGAGA 807
Query 714 CTCGGAGACGTATTACATGATGAATCCTGATGGGAACAGTGGACCTGAACTTAGTATCTT 773
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 808 CTCCGAGACGTATTACATGATGAATCCTGATGGGAACAGTGGACCTGAGCTTAGTATCTT 867
Query 774 TTTTGTTCGGGTTTAATAAAACGACGTCACTTTAGGGGAAACAt------tt--t----c 821
||| || |||||||||||||||||||||||||||||||||||| || | |
Sbjct 868 TTTCGTGAGGGTTTAATAAAACGACGTCACTTTAGGGGAAACATAAAAACTTCATTTTTC 927
Query 822 t-t-ttt------cctgttgattttgttt-ttt-ggtattctt-ttttcctaatttgGTA 870
| | ||| |||||||||||||||| ||| ||||||||| ||||| ||||||||||
Sbjct 928 TCTATTTATTTTTCCTGTTGATTTTGTTTCTTTTGGTATTCTTCTTTTC-TAATTTGGTA 986
Query 871 AATTATTCGAAATGATTTG 889
|||||||||||||||||||
Sbjct 987 AATTATTCGAAATGATTTG 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43402303008
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5