BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487522
Length=967
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07020.1 | Symbols: | proline-rich family protein | chr5:21... 1336 0.0
> AT5G07020.1 | Symbols: | proline-rich family protein | chr5:2180502-2182418
REVERSE LENGTH=1009
Length=1009
Score = 1336 bits (723), Expect = 0.0
Identities = 883/959 (92%), Gaps = 15/959 (2%)
Strand=Plus/Plus
Query 1 GTTACACGCGTAGGCTAGTGAAAAAGCCCACCACACACATCTTCTTC-CGACTTCCTC-C 58
|||||||||||||||||||| |||||||||||||||| | | | | | || || ||
Sbjct 1 GTTACACGCGTAGGCTAGTGGAAAAGCCCACCACACATAAC-AC-ACAC-ACATCTTCTT 57
Query 59 CCTCT-TTTATCTTCTTCGCCT-TGTCTGT-TCTAAGAAGATAGAACAAACCCAAGAATC 115
||||| |||||||||||| || ||| | | |||||||||||||||||| ||||||| ||
Sbjct 58 CCTCTCTTTATCTTCTTCTTCTCTGT-T-TCTCTAAGAAGATAGAACAATCCCAAGATTC 115
Query 116 TCGTCGAATCTGATAAACCATGTCGAACGTCTTGCTATCCCCAAACGGCTGCGTTTTTGC 175
|| || || |||| |||||||||||| |||||||||||||||||||||| ||| |||||
Sbjct 116 TCCTCTTATTTGATCAACCATGTCGAATGTCTTGCTATCCCCAAACGGCTACGTATTTGC 175
Query 176 ATCGCCCAAACCTCTTGGCAGATTCCTGAATTCAAAGTCCGGCGGACGGAAACTTGTCGT 235
|||||| |||||||||||||||||| | ||||||||||||||||||||||||||| || |
Sbjct 176 ATCGCCTAAACCTCTTGGCAGATTCATCAATTCAAAGTCCGGCGGACGGAAACTTTTCTT 235
Query 236 CTCCGTCGTCAGAGCTTCTTCCGATGATGCTGATTGTAATGCCGAAGAATGTGCTCCCGA 295
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CTCCGTCGTTAGAGCTTCTTCCGATGATGCTGATTGTAATGCCGAAGAATGTGCTCCCGA 295
Query 296 GAAGGAGGTAGGAACAGTGAGTATGGAATGGTTGGCTGGAGAGAAGACGAAAGTGGTGGG 355
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 296 GAAGGAGGTAGGAACAGTGAGTATGGAATGGTTAGCTGGAGAGAAGACGAAAGTGGTGGG 355
Query 356 AACGTTTCCTCCTCGGAGGCCGCGTGGCTGGACTGGCTATGTTGAGAAAGATACTGCCGG 415
||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 356 AACATTTCCTCCTCGGAAGCCGCGTGGTTGGACTGGCTATGTTGAGAAAGATACTGCTGG 415
Query 416 TCAGACTAATGTTTACTCTATTGAGCCTGCAGTATATGTTGCAGAGAGCGCAATCAGCTC 475
|||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 416 TCAGACTAATGTTTACTCCATTGAGCCTGCAGTATATGTTGCAGAGAGCGCGATTAGCTC 475
Query 476 AGGTACTGCAGGATCATCTTCTGATGGGGCTGAGAACACAGCAGCAATCGTAGCAGGCAT 535
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 476 AGGTACTGCAGGATCATCGGCTGATGGGGCTGAGAACACAGCAGCAATCGTAGCAGGCAT 535
Query 536 TGCCCTTATCGCAGTCGCTGCAGCTTCCTCTATACTCCTCCAAGTTGGGAAAGATGCACC 595
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 536 TGCTCTTATCGCAGTCGCTGCAGCTTCCTCTATACTCCTCCAAGTCGGGAAAGATGCCCC 595
Query 596 GACTCGACCAAAAGCAGTGGATTACAGTGGACCGTCTCTTAGCTACTACATCAACAAGTT 655
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AACTCGACCCAAAGCAGTGGATTACAGTGGACCGTCTCTTAGCTACTACATCAACAAGTT 655
Query 656 CAAGCCTTCAGAAATTGTTCAAGCTTCTACCCCCTCCATCACAGAAGCTCCGCCGATGGC 715
||||||||| |||||||||||| |||||||||||||| |||||||||| || ||| ||||
Sbjct 656 CAAGCCTTCTGAAATTGTTCAACCTTCTACCCCCTCCGTCACAGAAGCCCCACCGGTGGC 715
Query 716 CGAGCAAGAAACCTCAGTCCCAGAAACTCCACCGGTGGCTCAGCAAGAAACCTCACTGCC 775
||||| |||||| ||| | |||||||||||| ||||||||||||||||||||||||||||
Sbjct 716 CGAGCTAGAAACTTCACTGCCAGAAACTCCATCGGTGGCTCAGCAAGAAACCTCACTGCC 775
Query 776 GGAAACTATGGCCAGTGAGGCTCAGCCAGAGGCGTCCTCTGTTCCAACAACAAGTAGTAC 835
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 776 GGAAACTATGGCTAGTGAGGCTCAGCCAGAGGCGTCTTCTGTTCCAACAACAAGTAGTAC 835
Query 836 CTCTTAGGAGG-TTAGCCTAGGATTATATCTT-GTGTAAAGATGAGATGAAGCATAGACC 893
|||||||| || |||||||||||||||||||| ||||||| ||||||||||||||| |||
Sbjct 836 CTCTTAGG-GGCTTAGCCTAGGATTATATCTTTGTGTAAAAATGAGATGAAGCATATACC 894
Query 894 A-GTATTATGCATTCTGTTAATATTCGGATATATCTACCTATATGTATACACTCTATCA 951
| | ||||||||||||||||||||||||||||| ||| | |||||||||||||| |||
Sbjct 895 AAG-ATTATGCATTCTGTTAATATTCGGATATACCTATATGTATGTATACACTCTGTCA 952
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47320566474
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5