BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487523
Length=1766
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07030.1 | Symbols: | Eukaryotic aspartyl protease family p... 2743 0.0
> AT5G07030.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr5:2183360-2185972 REVERSE LENGTH=1863
Length=1863
Score = 2743 bits (1485), Expect = 0.0
Identities = 1681/1774 (95%), Gaps = 20/1774 (1%)
Strand=Plus/Plus
Query 1 GAAACAAGAGCAGTTT-AA-TTAATCTATTCTTTATTTTACCGCGGATTCAAACTCAAAA 58
||||| |||||||||| || |||| ||| |||||||||||||| ||||||||||| ||||
Sbjct 90 GAAACGAGAGCAGTTTAAATTTAAGCTAATCTTTATTTTACCGTGGATTCAAACTTAAAA 149
Query 59 CCTAATAAGC-GAAATAATCATTGATTTGTATCATTTTAGTTAAATATA-TTTTGGATTT 116
|||||||||| |||||||| |||||||||||||| | ||||||| |||| |||| |||||
Sbjct 150 CCTAATAAGCGGAAATAATTATTGATTTGTATCA-TATAGTTAATTATACTTTT-GATTT 207
Query 117 TATGTGCTTGGTCATTTTGTAGCTCAGACCACACTATAAATAACCTTCTCATGCCAACAC 176
|||||||||||||||| ||||||||||| | ||||||| ||| |||||||||||||||||
Sbjct 208 TATGTGCTTGGTCATTATGTAGCTCAGA-C-CACTATATATACCCTTCTCATGCCAACAC 265
Query 177 CATTTAAT-ACCCATCCAACCCAAAAGCATACAATACAATATGTCTACTCTTGTTTTATT 235
|||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 266 CATTTAATAACCCATCCAACCCAAAAGCATACAATAC-A-ATGTCTACTCTTGTTTTATT 323
Query 236 CCTCCAACTTTTTTCCATCGTCCCATTAGCACTTGGGTTAAACCACCCAAACTGTGACCT 295
||||||||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||
Sbjct 324 CCTCCAACTTTTTTCCATCCTACCATTAGCACTTGGGTTGAACCACCCAAATTGTGACCT 383
Query 296 CACCAAGACTCAAGACCAAGGCTCTACCTTAAGAATCTTCCACATAGACAGCCCTTGCTC 355
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 384 GACCAAGACTCAAGACCAAGGCTCTACCCTAAGAATCTTCCACATAGACAGCCCTTGCTC 443
Query 356 CCCCTTCAAATCATCTTCCCCACTCTCATGGGAAGCGCGTGTGCTCCAGACGCTGGCTCA 415
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 CCCCTTCAAATCATCATCCCCACTCTCATGGGAAGCGCGTGTGCTCCAGACGCTGGCTCA 503
Query 416 AGACCAGGCCCGTCTCCAGTACTTGAGCAGCCTTGTCGCCGGGAGATCTGTAGTCCCCAT 475
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 504 AGACCAGGCCCGTCTCCAGTACCTGAGCAGCCTCGTCGCCGGGAGATCTGTAGTCCCCAT 563
Query 476 CGCCTCAGGGCGTCAAATGTTGCAAAGCACTACATACATTGTCAAGGCTTTGATCGGAAC 535
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 564 TGCCTCAGGGCGTCAAATGTTGCAAAGCACTACATACATTGTCAAGGCTTTGATCGGTAC 623
Query 536 TCCGGCTCAGCCACTGCTCCTAGCCATGGACACGAGCAGTGACGTGGCTTGGATTCCGTG 595
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 624 TCCGGCTCAGCCGCTGCTCCTAGCCATGGACACGAGCAGTGACGTGGCTTGGATTCCTTG 683
Query 596 CTCCGGCTGCGTTGGCTGTCCTTCTAACACCGCCTTTTCTCCC-GCCAAGTCCACCTCCT 654
|||||||||||||||||||||||||||||| |||||||| ||| || ||||| || ||||
Sbjct 684 CTCCGGCTGCGTTGGCTGTCCTTCTAACACGGCCTTTTC-CCCTGCTAAGTCTACATCCT 742
Query 655 TCAAGAATGTTAGTTGCAGCGCTCCTCAGTGTAAGCAGGTACCAAACCCCACGTGTGGAG 714
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 TCAAGAACGTTAGCTGCAGCGCTCCTCAGTGTAAGCAGGTACCAAACCCCACGTGTGGAG 802
Query 715 CACGCGCCTGCTCATTCAACCTCACTTATGGAAGCTCCTCCATTGCGGCTAACCTCTCTC 774
||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 803 CACGCGCGTGCTCTTTCAACCTCACCTATGGAAGCTCCTCCATTGCGGCTAACCTCTCTC 862
Query 775 AAGACACCATCCGCCTCGCCGCCGACCCGATCAAAGCCTTTACCTTCGGATGCGTCAACA 834
||||||| || || || |||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 863 AAGACACGATACGTCTTGCCGCCGATCCGATCAAAGCCTTTACATTCGGATGCGTCAACA 922
Query 835 AAGTCGCCGGTGGAGGAACCATCCCACCACCACAAGGCTTGTTGGGCTTGGGACGAGGCC 894
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 923 AAGTCGCCGGTGGAGGAACCATCCCACCACCTCAAGGCTTGTTGGGCTTGGGACGAGGCC 982
Query 895 CACTTTCCCTCATGTCACAGGCTCAGTCCGTTTACAAGTCCACTTTCTCTTACTGTTTGC 954
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 983 CACTTTCACTCATGTCACAGGCTCAGTCTATTTACAAGTCCACTTTCTCTTACTGTTTGC 1042
Query 955 CAAGTTTCAGGTCTCTAACCTTCTCTGGTTCGCTGAGACTCGGCCCTACCTCCCAGCCTC 1014
|||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |
Sbjct 1043 CAAGTTTCAGGTCTCTGACCTTCTCTGGTTCTCTCAGACTCGGCCCTACCTCCCAGCCCC 1102
Query 1015 AGCGCGTGAAGTACACTCAACTTCTCAGAAACCCTAGAAGGTCTTCTTTGTATTACGTCA 1074
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 1103 AGCGCGTGAAGTACACTCAACTTCTCAGAAACCCTAGAAGGTCTTCTCTGTACTACGTCA 1162
Query 1075 ACCTCGTTGCGATCCGCGTTGGTCGGAAAGTCGTCGATTTACCGCCGGCAGCTATTGCCT 1134
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1163 ACCTCGTTGCGATCCGCGTTGGTCGGAAAGTCGTCGATTTACCGCCGGCAGCTATTGCTT 1222
Query 1135 TTAATCCTTCCACCGGCGCTGGAACCATCTTTGACTCCGGGACTGTGTACACGCGGCTGG 1194
|||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1223 TTAATCCTTCAACCGGCGCTGGAACCATCTTCGACTCCGGAACTGTGTACACGCGGCTGG 1282
Query 1195 CTAAACCGGTATACGAGGCAGTGAGGAACGAGTTCAGGAAGCGCGTGAAGCCACCCACCG 1254
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 1283 CTAAACCGGTTTACGAGGCAGTGAGGAACGAGTTCAGGAAGCGCGTGAAGCCAACCACAG 1342
Query 1255 CCGTGGTGACGTCACTCGGGGGTTTCGACACGTGTTACTCAGGGCAAGTCAAGGTGCCGA 1314
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1343 CCGTGGTGACGTCACTCGGGGGTTTCGACACGTGCTACTCAGGGCAAGTCAAGGTGCCGA 1402
Query 1315 CGATAACATTCATGTTCAAGGGAGTGAACATGACGATGCCGGCTGATAACCTGATGTTAC 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 CGATAACATTCATGTTCAAGGGAGTGAACATGACGATGCCGGCTGATAACCTGATGTTAC 1462
Query 1375 ACAGCACCGCCGGAAGCACGTCGTGCCTCGCCATGGCCT-CAGCGCCGGAAAACGTAAAC 1433
|||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1463 ACAGTACCGCCGGAAGCACGTCGTGCCTCGCCATGG-CTGCAGCGCCGGAAAACGTAAAC 1521
Query 1434 TCTGTTGTCAATGTGATCGCAAGCATGCAGCAGCAGAACCACCGTGTCCTCATCGACGTT 1493
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1522 TCTGTCGTCAATGTGATCGCAAGCATGCAGCAGCAGAACCACCGTGTCCTCATCGACGTC 1581
Query 1494 CCCAATGGACGGCTCGGTTTGGCACGTGAACGATGCTCTTAGAAAGATGAATGAGACAAT 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1582 CCCAATGGACGGCTCGGTTTGGCACGTGAACGATGCTCTTAGAAAGATGAATGAGACAAT 1641
Query 1554 AAGAGCCTACTCATATTTATGCAGAGACttgtttgtttgtgttctttgtgtgtttcattt 1613
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1642 AAGAGCCTACTCATATTTATGCAGAGACTTGTTTGTTTGTGTTATTTGTGTGTTTCATTT 1701
Query 1614 ttgtcttttctcgtgtcgtttgCTTCACCAGTCTTAGAGGGCGGTGGTGTTTAGCATTTG 1673
||||||| ||| | |||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1702 TTGTCTTGTCTTGCGTCGTTTGCTTCACCAGTCTTAGAGGGCGGAGGTGTGTAGCATTTG 1761
Query 1674 TGCTATCAAGTCATTTTTATGTTTTTAACTGTTCTTGAATTCTCTAGAGAT-TTGGATCT 1732
||||||| ||| |||| |||||||||| ||||||| |||| ||||||| | ||||||||
Sbjct 1762 TGCTATCTAGTAATTT--ATGTTTTTAATTGTTCTTCAATTATCTAGAG-TGTTGGATCT 1818
Query 1733 AAAACTAATCAAATAATGAAACTATATAATATTT 1766
|| ||||||||||||||||||||||| ||||||
Sbjct 1819 AAG-CTAATCAAATAATGAAACTATATTATATTT 1851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87348948300
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5