BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487525
Length=1358
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07050.1 | Symbols: | nodulin MtN21 /EamA-like transporter ... 2032 0.0
> AT5G07050.1 | Symbols: | nodulin MtN21 /EamA-like transporter
family protein | chr5:2191385-2193416 REVERSE LENGTH=1357
Length=1357
Score = 2032 bits (1100), Expect = 0.0
Identities = 1281/1365 (94%), Gaps = 25/1365 (2%)
Strand=Plus/Plus
Query 1 ATGTCGATGGAGGAGCTTAGTAGCTGTGAGAGCTTTCTCACAAGCTCTAAACCCTACTTC 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCGATGGAGGAGATTAGTAGCTGTGAGAGCTTTCTCACAAGCTCTAAACCCTACTTC 60
Query 61 GCCATGATATCTCTCCAGTTTGGCTACGCCGGCATGAACATAATTACCAAAATATCCCTC 120
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 GCCATGATATCTCTCCAGTTTGGCTACGCCGGCATGAATATAATTACCAAAATATCCCTC 120
Query 121 AACACCGGTATGAGCCACTATGTCCTTGTCGTCTACCGCCATGCAATCGCCACCGCCGTT 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 AACACCGGTATGAGCCACTATGTCCTTGTCGTCTACCGCCATGCAATTGCCACCGCCGTT 180
Query 181 ATTGCACCCTTTGCTTTCTTCTTCGAAAGGAAGGCTCAGCCGAAAATAACGTTCTCCATT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTGCACCCTTTGCTTTCTTCTTCGAAAGGAAGGCTCAGCCGAAAATAACGTTCTCCATT 240
Query 241 TTCATGCAACTATTCATTCTCGGCCTTCTCGGGCCAGTGATCGATCAAAACTTCTACTAC 300
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 TTCATGCAACTATTCATTCTCGGCCTTCTTGGGCCAGTGATCGATCAAAACTTCTACTAC 300
Query 301 ATGGGGCTGAAATATACTTCCCCCACGTTCTCATGCGCCATGAGTAACATGCTTCCGGCC 360
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 301 ATGGGGCTGAAATATACGTCCCCAACGTTCTCATGCGCCATGAGTAACATGCTTCCGGCC 360
Query 361 ATGACCTTTATCTTGGCCGTACTATTCCGGATGGAGATGTTGGACGTGAAGAAACTGTGG 420
||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 361 ATGACCTTTATCTTGGCTGTACTATTCCGGATGGAGATGTTGGACCTGAAGAAACTGTGG 420
Query 421 TGTCAGGCGAAAATAGGCGGCACGGTGGTGACAGTAGGC-GGAGCGATGGTGATGACAAT 479
|||||||||||||||| ||| ||||| |||||||| ||| ||||||||| | ||||||||
Sbjct 421 TGTCAGGCGAAAATAGCCGGAACGGTAGTGACAGT-GGCGGGAGCGATGCTAATGACAAT 479
Query 480 TTACAAGGGACCCATCGTTGAGCTGTTTTGGACCAAATATATGCATCTTCAAGACTCGTC 539
|||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||| ||
Sbjct 480 TTACAAAGGACCCATCGTTGAGCTATTTTGGACCAAATATATGCATATTCAAGACTCTTC 539
Query 540 ACATGCTAATCATACGACGTCGTCTAAGAACTCATCAAGTGATAAGGAATTTCTCAAAGG 599
||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 540 ACATGCT-A--ATACGACGTCGTCTAAGAACTCATCAAGTGATAAGGAATTCCTCAAAGG 596
Query 600 CTCCATCCTCCTCATCTTTGCAACACTAGCATGGGCCTCCCTCTTCGTTCTACAGGCAAA 659
|||||||||||| |||||||||||||| || |||||||||||||| ||||||||||||||
Sbjct 597 CTCCATCCTCCTAATCTTTGCAACACTCGCTTGGGCCTCCCTCTTTGTTCTACAGGCAAA 656
Query 660 AATACTAAAGACGTATGCGAAGCATCAGCTTTCTCTAACAACACTAATTTGCTTCATCGG 719
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GATACTAAAGACGTACGCGAAGCATCAGCTTTCTCTAACAACACTAATTTGCTTCATCGG 716
Query 720 AACACTACAAGCAGTTGCTGTGACGTTTGTGATGGAACACAATCCCTCTGTTTGGAGAAT 779
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 717 AACACTACAAGCAGTTGCTGTGACGTTTGTGATGGAACACAACCCCTCTGCTTGGAGAAT 776
Query 780 TGGTTGGGACATGAATCTCCTTGCCGCCGCTTACTCTGGGATTGTGGCATCAAGTATCTC 839
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TGGCTGGGACATGAACCTCCTTGCCGCCGCTTACTCTGGGATTGTGGCATCAAGTATCTC 836
Query 840 ATACTATGTGCAAGGGATAGTGATGAAGAAAAGAGGACCTGTGTTTGCTACTGCCTTTAG 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ATACTATGTGCAAGGGATAGTGATGAAGAAAAGAGGACCTGTGTTTGCTACTGCCTTTAG 896
Query 900 TCCTTTGATGATGGTTATTGTTGCTGTCACGGGTTCTTTTGTCTTGGCAGAAAAAATCTT 959
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 897 TCCTTTGATGATGGTTATTGTTGCTGTCATGGGTTCTTTTGTCTTGGCAGAAAAAATCTT 956
Query 960 CCTTGGAGGGGTGATTGGTGCAGTACTGATTGTAATTGGACTGTATGCGGTCTTATGGGG 1019
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 957 CCTTGGAGGGGTGATTGGTGCGGTACTGATTGTAATTGGACTGTATGCTGTCTTATGGGG 1016
Query 1020 AAAGCAAAAGGAGAATCAAGTGACAATATGTGACGAACAATCCAAGATTGAGTCAAATAG 1079
|||||||||||||||||||||||| |||||||| | | | |||||||||| ||||||||
Sbjct 1017 AAAGCAAAAGGAGAATCAAGTGACTATATGTGA--A-CTAGCCAAGATTGACTCAAATAG 1073
Query 1080 TAAAGTAACTAAAGATGTGGAAGCTAATGGAACCGAGATGAAAATCTCGGAAGGTGATAA 1139
|||||||||| |||||||||||||||||||| | | ||||||||||||||||| |||||
Sbjct 1074 TAAAGTAACTGAAGATGTGGAAGCTAATGGATCTAAAATGAAAATCTCGGAAGGGGATAA 1133
Query 1140 CTCTATGCTGTCGACGATTGTAATCAGCGTTCCATTATCGGAAACACCTTTGAAAAAGAC 1199
||||||||| || ||||||||||||||||| ||| | |||||||||| ||||||||||||
Sbjct 1134 CTCTATGCTCTCTACGATTGTAATCAGCGTACCACTGTCGGAAACACATTTGAAAAAGAC 1193
Query 1200 TATCCAAGAGCCATGAAGAAAGTATGGGGG-AGA-A-GAA---TAAAGCGAAAGGTTGTT 1253
||||||||||||||||||| |||||| | | | ||| |||| | ||||| ||||
Sbjct 1194 TATCCAAGAGCCATGAAGATTGTATGGCACTACATATGAAAAATAAAACTAAAGGCTGTT 1253
Query 1254 TTGGTCGAATCAGTGTATTTTTGTCTTTTAATTTTGACCTTATCTATGTAAATAAGAGTA 1313
|||||||||||||| ||||||||||| |||||||||||| | | |||| | || |
Sbjct 1254 TTGGTCGAATCAGT--ATTTTTGTCTTATAATTTTGACCT---C-A-GTAAG-A-GA--A 1302
Query 1314 AGAGCTCCAACTACtttttttCTTTTGTAAACAAAGAGCTCCAAC 1358
||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1303 AGAGCTCCAACTATTTTTTTTCTTTTGTAAACAAAGAGCTCCAAC 1347
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66867125940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5