BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487526
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07060.1 | Symbols: | CCCH-type zinc fingerfamily protein w... 619 1e-176
AT1G07360.1 | Symbols: | CCCH-type zinc fingerfamily protein w... 529 2e-149
> AT5G07060.1 | Symbols: | CCCH-type zinc fingerfamily protein
with RNA-binding domain | chr5:2194394-2195872 REVERSE LENGTH=1092
Length=1092
Score = 619 bits (335), Expect = 1e-176
Identities = 423/464 (91%), Gaps = 12/464 (3%)
Strand=Plus/Plus
Query 22 GCCGATTTCCCAATCACCTGCGAATCTTGCTTCGGAGACAATCCGTACGTGCGAATGACC 81
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 40 GCCGATTTCCCAATCACCTGCGAATCTTGCTTCGGTGACAATCCGTACATGCGAATGACC 99
Query 82 CGAGCGGATTATGATAAGGAATGCAAGATATGTAGACGCCCTTTCACAGCTTTTAGGTGG 141
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 100 CGAGCGGATTATGATAAGGAATGCAAGATATGTAGTCGTCCTTTCACAGCTTTTAGGTGG 159
Query 142 CGACCAGGCCGGAATGCTAGATTCAAGAAAACCGAAATTTGTCAGACTTGCTGC-AGGCT 200
||||||||||||||||||||||||||||||||||| |||||||| ||||||| | | |||
Sbjct 160 CGACCAGGCCGGAATGCTAGATTCAAGAAAACCGAGATTTGTCAAACTTGCT-CTAAGCT 218
Query 201 GAAAAATGTATGCCAAGTCTGTCTTCTGGATCTCGAGTTT-GGTCTTCCTGTTCAGGTCA 259
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 219 AAAAAATGTATGCCAAGTCTGTCTTCTGGATCTCG-GTTTTGGTCTTCCTGTTCAGGTCA 277
Query 260 GAGACACCGCACTCCAA-ATTAATAGTACTCATTACTCTATCCCAGA-GAGCCATGTCAA 317
||||| | |||||| || |||||| | |||| |||||| ||||| | ||||||||||||
Sbjct 278 GAGACTCAGCACTC-AATATTAAT--T-CTCACTACTCTGTCCCA-ATGAGCCATGTCAA 332
Query 318 CAGAGAGTACTTTGCTGAAGAGCACGACAGGAAGACTAGAGCTGGACTGGATTATGAATC 377
|||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||
Sbjct 333 CAGAGAGTACTTTGCTGACGAGCATGACCCAAAGACTAGAGCTGGACTGGATTATGAATC 392
Query 378 TTCATTTGGGAAGATGCTACCTAATG-TACTATTTCAAATCTTCAAAGAACAACACCATA 436
||||||||||||||||| |||||||| |||||||| ||| ||||| |||| |||||| |
Sbjct 393 TTCATTTGGGAAGATGCAACCTAATGATACTATTTTAAAGCTTCAGAGAAGAACACCTTC 452
Query 437 CTATGATAGGAACCGGCCACGAGTTTGTAGTTTCTACACCATTG 480
|||||| | |||||||||| | |||||||||||||||||||||
Sbjct 453 CTATGAAAAGAACCGGCCAAAAATTTGTAGTTTCTACACCATTG 496
Score = 322 bits (174), Expect = 4e-87
Identities = 263/305 (86%), Gaps = 10/305 (3%)
Strand=Plus/Plus
Query 480 GATGCCCGAAACAGGAGAGCTATCCCAGCAAAACATAAAAGATCGTTATTATGGTGTAAA 539
||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||
Sbjct 537 GATGCCCGAAACAGGAGAGCTATCCCATCAAAACATAAGAGATCGTTATTATAGTGTAAA 596
Query 540 TGATCCAGTCGCGAAGAAGTTACAT-GGAAAAGCTGGTGAGATGGGCACTTTGGAACCAC 598
|||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||
Sbjct 597 TGATCCAGTCGCGATGAAGTTAC-TCAGAAAAGCTGGTGAGATGGGCACTTTGGAACCAC 655
Query 599 CAGAGGATGAAAGCATCAAAACGCTTTATGTCCGTGGACTTAACTCGAGTATCCTCGAAC 658
|||||||||||||||||||||| ||||| ||| ||||||||||||| || ||| | || |
Sbjct 656 CAGAGGATGAAAGCATCAAAACACTTTACGTCGGTGGACTTAACTCAAGAATCTTTGAGC 715
Query 659 AAGACATACATGACAAACT-CTACGCTTATGGAGCTATCAGAGTCTTTGCCGAGAAA-GG 716
| |||||||||||| | || |||||||||||||| || || ||| | | ||| | ||
Sbjct 716 AGGACATACATGACCA-CTTCTACGCTTATGGAGAAATG-GAATCTAT-CAGAGTCATGG 772
Query 717 CT-ATGCGTCCCCAAACCTGATCAAAGTGGTTCAAACCAACAGCAACAGGGCAGTGTGGC 775
| | | | | ||| ||||||||||||||||||||||||||||||||||||| | ||
Sbjct 773 CCGAGGA-TGGC-AAATATGATCAAAGTGGTTCAAACCAACAGCAACAGGGCAGTATCGC 830
Query 776 TCATA 780
|||||
Sbjct 831 TCATA 835
> AT1G07360.1 | Symbols: | CCCH-type zinc fingerfamily protein
with RNA-binding domain | chr1:2260389-2262865 REVERSE LENGTH=1689
Length=1689
Score = 529 bits (286), Expect = 2e-149
Identities = 402/456 (88%), Gaps = 16/456 (4%)
Strand=Plus/Plus
Query 23 CCGATTTCCCAATCACCTGCGAATCTTGCT-TCGGAGACAATCCGTACGTGCGAATGACC 81
||||||||||||||| |||||||||||| | |||| ||||| || |||||||||||||||
Sbjct 120 CCGATTTCCCAATCATCTGCGAATCTTG-TCTCGGTGACAACCCCTACGTGCGAATGACC 178
Query 82 CGAGCGGATTATGATAAGGAATGCAAGATATGTAGACGCCCTTTCACAGCT-TTTAGGTG 140
|||| ||||||||||||||||||||||||||| ||| |||||||| | | ||||||||
Sbjct 179 AAAGCGAATTATGATAAGGAATGCAAGATATGTACACGACCTTTCAC-GGTGTTTAGGTG 237
Query 141 GCGACCAGGCCGGAATGCTAGATTCAAGAAAACCGAAATTTGTCAGACTTGCTGCAGGCT 200
|||||| |||||| ||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 238 GCGACCTGGCCGGGATGCTAGATACAAGAAAACCGAAATTTGTCAGACTTGCTGCAAGTT 297
Query 201 GAAAAATGTATGCCAAGTCTGTCTTCTGGATCTCGAGTTTGGTCTTCCTGTTCAGGTCAG 260
||||||||| || |||||||||||||||||||| |||| ||||||||| ||||| || ||
Sbjct 298 GAAAAATGTTTGTCAAGTCTGTCTTCTGGATCTTGAGTATGGTCTTCCAGTTCAAGTAAG 357
Query 261 AGACACCGCACTCCAA-ATTAATAGTACTCATTACTCTATCCC-AGAGAGCCATGTCAAC 318
|||||| |||||| || |||| |||||||| |||||||||| | | || ||||||||
Sbjct 358 AGACACAGCACTC-AACATTA---GTACTCATGACTCTATCCCTAAA-AGTGATGTCAAC 412
Query 319 AGAGAGTACTTTGCTGAAGAGCACGACAGGAAGACTAGAGCTGGACTGGATTATGAATCT 378
|||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 413 AGAGAGTATTTTGCTGAAGAGCATGACAGGAAGGCTAGAGCTGGACTGGATTATGAATCT 472
Query 379 TCATTTGGGAAGATGCTACCTAATG-TACTATTTCAAATCTTCAAAGAACAACACCATAC 437
||||| |||||||||| ||| |||| |||||||| ||| ||||||||||||||||| |||
Sbjct 473 TCATTCGGGAAGATGCGACCCAATGATACTATTTTAAAGCTTCAAAGAACAACACCGTAC 532
Query 438 TATGATAGGAACCG-GCCACGA-GTTTGTAGTTTCT 471
||| | |||||||| || || | |||||||||||||
Sbjct 533 TATAAGAGGAACCGAGC-AC-ATGTTTGTAGTTTCT 566
Score = 265 bits (143), Expect = 7e-70
Identities = 190/213 (89%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 480 GATGCCCGAAACAGGAGAGCTATCCCAGCAAAACATAAAAGATCGTTATTATGGTGTAAA 539
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 616 GATGCCCGAAACAGGAGAGCTATCCCAGCAAAACATAAAAGACCGTTATTATGGTGTTAA 675
Query 540 TGATCCAGTCGCGAAGAAGTTACATGGAAAAGCTGGTGAGATGGGCACTTTGGAACCACC 599
||||||||| || | |||||| | ||| ||||||||||||||||||||||||||| | ||
Sbjct 676 TGATCCAGTTGCTATGAAGTTGCTTGGCAAAGCTGGTGAGATGGGCACTTTGGAATCGCC 735
Query 600 AGAGGATGAAAGCATCAAAACGCTTTATGTCCGTGGACTTAACTCGAGTATCCTCGAACA 659
||| ||||||||||||||||| ||||| ||| |||||||||||||||| || ||||| ||
Sbjct 736 AGACGATGAAAGCATCAAAACCCTTTACGTCGGTGGACTTAACTCGAGAATTCTCGAGCA 795
Query 660 AGACATAC-ATGACAAACTCTACGCTTATGGAG 691
||||||| | ||| || |||||||| ||||||
Sbjct 796 GGACATACGA-GACCAATTCTACGCTCATGGAG 827
Score = 261 bits (141), Expect = 9e-69
Identities = 184/204 (90%), Gaps = 6/204 (3%)
Strand=Plus/Plus
Query 782 TGCAGCAGTACTATACGCACCCACCACCACCTAACCAATACAGACCTTATGACCCATCAA 841
||||||||||||||| ||||||||||||| |||||||| ||| ||||||| |||||||||
Sbjct 1074 TGCAGCAGTACTATATGCACCCACCACCAGCTAACCAAGACAAACCTTATTACCCATCAA 1133
Query 842 TGGACCCGCAGAGAATGGGTGCAGTCATTTCAACCCAAGAGGGTGGTGGTTCAAGCACCA 901
||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1134 TGGACCCACAGAGAATGGGTGCAGTCATTTCAACCCAAGAGGCTGGTGGTTCAAGCAC-- 1191
Query 902 GTGAGAACAACGGAGCTTC-T-T-CTTCTTACCCGATGCCTCCACACCAGCCAAACCTGC 958
|||||||||||||||||| | | |||||||| |||||||||||||||| || ||| |
Sbjct 1192 -TGAGAACAACGGAGCTTCATCTTCTTCTTACATGATGCCTCCACACCAGTCATACCCAC 1250
Query 959 CACCACCATATGGATATATGACAT 982
|||||||||||||||||||| |||
Sbjct 1251 CACCACCATATGGATATATGCCAT 1274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48174546973
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5