BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487529
Length=1097
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07090.1 | Symbols: | Ribosomal protein S4 (RPS4A) family p... 1696 0.0
AT5G58420.1 | Symbols: | Ribosomal protein S4 (RPS4A) family p... 1022 0.0
AT2G17360.1 | Symbols: | Ribosomal protein S4 (RPS4A) family p... 998 0.0
> AT5G07090.1 | Symbols: | Ribosomal protein S4 (RPS4A) family
protein | chr5:2202380-2204077 FORWARD LENGTH=1091
Length=1091
Score = 1696 bits (918), Expect = 0.0
Identities = 1041/1098 (95%), Gaps = 17/1098 (2%)
Strand=Plus/Plus
Query 1 AGCCGCAGTGGAATCAGAGCAGCTGCAAACATGGCAAGAGGATTGAAGAAGCATCTAAAG 60
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AGCCTCAGTGGAAACAGAGCAGCTGCAAACATGGCAAGAGGATTGAAGAAGCATCTAAAG 60
Query 61 AGGATCAATGCTCCTAAGCATTGGATGCTTGACAAACTTGGTGGTGCCTTCGCTCCCAAA 120
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTTGGTGGTGCCTTCGCTCCCAAA 120
Query 121 CCATCTTCTGGACCTCACAAGTCGAGGGAGTGTCTTCCTCTTGTCCTGATCATCAGGAAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCATCTTCTGGACCTCACAAGTCGAGGGAGTGTCTTCCTCTTGTCCTGATCATCAGGAAC 180
Query 181 AGGTTGAAGTATGCTTTGACTTACCGTGAAGTTATCTCTATCTTGATGCAAAGGCATATC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AGGTTGAAGTATGCTTTGACTTACCGTGAAGTTATCTCTATCTTGATGCAAAGGCATATC 240
Query 241 CAAGTTGATGGCAAAGTTAGGACTGACAAGACTTACCCTGCTGGCTTT-ATGGATGTTGT 299
||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||||||
Sbjct 241 CAAGTTGATGGCAAAGTCAGGACTGACAAGACTTACCCTGCTGG-TTTCATGGATGTTGT 299
Query 300 ATCCATCCCCAAGACCAATGAGAACTTCCGTCTTCTCTACGACACCAAAGGACGTTTCCG 359
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 300 ATCCATCCCCAAGACCAATGAGAACTTCCGTCTTCTCTACGACACCAAGGGACGTTTCCG 359
Query 360 TCTCCACTCCATCAAGGATGAGGAATCAAAGTTCAAGCTTTGCAAGGTTAGATCTATCCA 419
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 360 TCTCCACTCCATCAAGGATGAGGAAGCAAAGTTCAAGCTTTGCAAGGTTAGATCTATCCA 419
Query 420 GTTTGGTCAGAAGGGAATTCCTTTCTTGAACACTTATGATGGTCGCACCATCCGTTACCC 479
||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 420 GTTTGGTCAGAAGGGAATTCCATACCTGAACACTTATGATGGTCGCACCATCCGTTACCC 479
Query 480 TGACCCGCTCATCAAGCCAAACGACACCATCAAGCTGGACCTTGAGGAGAACAAGATTGT 539
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 480 TGACCCGCTCATCAAGCCAAATGACACCATCAAGCTGGACCTTGAGGAGAACAAGATTGT 539
Query 540 TGAGTTCATCAAGTTTGACGTGGGTAATGTTGTGATGGTTACTGGAGGCAGAAACAGAGG 599
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 540 TGAGTTCATCAAGTTTGACGTGGGTAACGTTGTGATGGTGACTGGAGGCAGAAACAGAGG 599
Query 600 GCGTGTTGGCGTGATCAAGAACCGGGAAAAGCATAAGGGAAGCTTTGAGACGATACACAT 659
|||||| || ||||| |||||||| |||||||||||||||||||||||||| || |||||
Sbjct 600 GCGTGTGGGTGTGATTAAGAACCGTGAAAAGCATAAGGGAAGCTTTGAGACAATCCACAT 659
Query 660 TCAAGACTCAACAGGACATGAGTTTGCCACAAGGTTGGGCAATGTGTTCACCATCGGCAA 719
||||||||||||||| ||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct 660 TCAAGACTCAACAGGGCATGAGTTTGCCACAAGGTTGGGGAATGTGTACACAATCGGCAA 719
Query 720 AGGAACAAAGCCATGGGTGTCTCTTCCAAAGGGCAAAGGTATTAAGCTGACCATCATTGA 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGGAACAAAGCCATGGGTGTCTCTTCCAAAGGGCAAAGGTATTAAGCTGACCATCATTGA 779
Query 780 GGAAGCTAGGAAGAGACTTGCTTCACAACAAGCTGCTTAAAACTCCAACTGCTTTGAATC 839
|||||| ||||||||||||||||| || |||||||||| ||| |||||||||||||||||
Sbjct 780 GGAAGCCAGGAAGAGACTTGCTTCCCAGCAAGCTGCTTGAAAGTCCAACTGCTTTGAATC 839
Query 840 ATCAAGACCATTTCGATTTTACTCTGTCATAGACTCGCTGCTTATCTCAGTTTGTGAGCC 899
||||||||| || ||| || | | | ||||||||||||| |||||||||||||| |
Sbjct 840 ATCAAGACC----CG-TTT--CTTT-T-ACAGACTCGCTGCTTGTCTCAGTTTGTGAGTC 890
Query 900 TATTTCTTTTCCTATGTTGTTGGCTTCCAAAACCCATCaaaaaaaTAGCTGAGTAGAGCG 959
||||||||||| ||||||||||| || ||||||||||||||||| ||||||||||| ||
Sbjct 891 TATTTCTTTTCTTATGTTGTTGGATTTCAAAACCCATCAAAAAA-TAGCTGAGTAGTGCT 949
Query 960 TTTTGTAATGTTTGTATGGTGGAtttttttGGTGATTTACCGTTTAAATCAGATGACAGT 1019
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 950 TTTTGTAATGTTTGTATGGTGGATTTTTT-GGTGATTTACCGTTTAAATCAGATGACAGT 1008
Query 1020 TTCTTAGTCCACTCCTTTGCTTAGTCTCCTCCTTTGCTTTGCGCTTTTAGTTGTTGAGAG 1079
| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1009 TG----GTCCACTCCTTTGCTTAGTCTTCTCCTTTGCTTTGCGCTATTAGTTGTTGAGAG 1064
Query 1080 ATGAGAAATAGATATTAT 1097
||||| ||||||||||||
Sbjct 1065 ATGAGTAATAGATATTAT 1082
> AT5G58420.1 | Symbols: | Ribosomal protein S4 (RPS4A) family
protein | chr5:23619506-23621094 FORWARD LENGTH=1080
Length=1080
Score = 1022 bits (553), Expect = 0.0
Identities = 716/796 (90%), Gaps = 6/796 (1%)
Strand=Plus/Plus
Query 27 AAACATGGCAAGAGGATTGAAGAAGCATCTAAAGAGGATCAATGCTCCTAAGCATTGGAT 86
||||||||| || || |||||||||||||| |||||| | ||||| ||||||||||||||
Sbjct 90 AAACATGGCGAGGGGTTTGAAGAAGCATCTGAAGAGGCTTAATGCGCCTAAGCATTGGAT 149
Query 87 GCTTGACAAACTTGGTGGTGCCTTCGCTCCCAAA-CCATCTTCTGGACCTCACAAGTCGA 145
||||||||||||||||||||| || || |||||| || ||||||||||| || ||||| |
Sbjct 150 GCTTGACAAACTTGGTGGTGCATTTGC-CCCAAAGCCGTCTTCTGGACCACATAAGTCAA 208
Query 146 GGGAGTGTCTTCCTCTTGTCCTGATCATCAGGAACAGGTTGAAGTATGCT-TTGACTTAC 204
||||||| ||||| || ||||| ||||||||||||||||||||||||||| || || |||
Sbjct 209 GGGAGTGCCTTCCCCTCGTCCTTATCATCAGGAACAGGTTGAAGTATGCTCTT-ACCTAC 267
Query 205 CGTGAAGTTATCTCTATCTTGATGCAAAGGCATATCCAAGTTGATGGCAAAGTTAGGACT 264
|||||||| || || |||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 268 CGTGAAGTGATTTCAATCTTGATGCAAAGGCATATCCAAGTTGATGGGAAAGTCAGGACG 327
Query 265 GACAAGACTTACCCTGCTGGCTTT-ATGGATGTTGTATCCATCCCCAAGACCAATGAGAA 323
|||||||| ||||||||||| ||| ||||||||||| || ||||||||||||||||||||
Sbjct 328 GACAAGACCTACCCTGCTGG-TTTCATGGATGTTGTGTCTATCCCCAAGACCAATGAGAA 386
Query 324 CTTCCGTCTTCTCTACGACACCAAAGGACGTTTCCGTCTCCACTCCATCAAGGATGAGGA 383
||||||||||||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 387 CTTCCGTCTTCTCTATGATACCAAGGGACGTTTCCGTCTCCACTCCATCAAGGATGAGGA 446
Query 384 ATCAAAGTTCAAGCTTTGCAAGGTTAGATCTATCCAGTTTGGTCAGAAGGGAATTCCTTT 443
| |||||||||| |||||||||||| |||||||||||||||| ||||| || |||||||
Sbjct 447 AGCAAAGTTCAAACTTTGCAAGGTTCGATCTATCCAGTTTGGACAGAAAGGCATTCCTTA 506
Query 444 CTTGAACACTTATGATGGTCGCACCATCCGTTACCCTGACCCGCTCATCAAGCCAAACGA 503
| |||||||||| ||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 507 CCTGAACACTTACGATGGTCGCACCATCCGTTACCCTGACCCGCTCATCAAGCCTAATGA 566
Query 504 CACCATCAAGCTGGACCTTGAGGAGAACAAGATTGTTGAGTTCATCAAGTTTGACGTGGG 563
|||||||||||| |||||||||| ||||||||||| ||||||||||||||||| || ||
Sbjct 567 CACCATCAAGCTCGACCTTGAGGCCAACAAGATTGTCGAGTTCATCAAGTTTGATGTTGG 626
Query 564 TAATGTTGTGATGGTTACTGGAGGCAGAAACAGAGGGCGTGTTGGCGTGATCAAGAACCG 623
||||||||||||||||| ||||| |||||||||||||||||||| ||||| || |||||
Sbjct 627 CAATGTTGTGATGGTTACAGGAGGTAGAAACAGAGGGCGTGTTGGTGTGATTAAAAACCG 686
Query 624 GGAAAAGCATAAGGGAAGCTTTGAGACGATACACATTCAAGACTCAACAGGACATGAGTT 683
|| ||||||||||||||||||||||| || ||||| ||||| |||||||||||||||||
Sbjct 687 TGAGAAGCATAAGGGAAGCTTTGAGACAATCCACATCCAAGATTCAACAGGACATGAGTT 746
Query 684 TGCCACAAGGTTGGGCAATGTGTTCACCATCGGCAAAGGAACAAAGCCATGGGTGTCTCT 743
||| ||||||||||| ||||||| |||||| |||||||||||||||||||||||||||||
Sbjct 747 TGCAACAAGGTTGGGTAATGTGTACACCATTGGCAAAGGAACAAAGCCATGGGTGTCTCT 806
Query 744 TCCAAAGGGCAAAGGTATTAAGCTGACCATCATTGAGGAAGCTAGGAAGAGACTTGCTTC 803
||| |||||||||||||| |||||||| ||||| ||||| || |||||||| ||||||
Sbjct 807 TCCCAAGGGCAAAGGTATCAAGCTGACTATCATCGAGGAGGCCAGGAAGAGGCTTGCTAG 866
Query 804 ACAACAAGCTGCTTAA 819
||||| |||||||||
Sbjct 867 TCAACAGGCTGCTTAA 882
> AT2G17360.1 | Symbols: | Ribosomal protein S4 (RPS4A) family
protein | chr2:7546480-7548313 FORWARD LENGTH=1079
Length=1079
Score = 998 bits (540), Expect = 0.0
Identities = 712/796 (89%), Gaps = 8/796 (1%)
Strand=Plus/Plus
Query 22 GCTGCAAACATGGCAAGAGGATTGAAGAAGCATCTAAAGAGGATCAATGCTCCTAAGCAT 81
|||||||||||||||||||| |||||||||||| | |||||| |||||||||||||||||
Sbjct 110 GCTGCAAACATGGCAAGAGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCTAAGCAT 169
Query 82 TGGATGCTTGACAAACTTGGTGGTGCCTTCGCTCCCAAACCATCTTCTGGACCTCACAAG 141
||||||||||| ||||||||||||||||| || ||||| || |||||||| || ||||||
Sbjct 170 TGGATGCTTGATAAACTTGGTGGTGCCTTTGCCCCCAAGCCGTCTTCTGGGCCACACAAG 229
Query 142 TCGAGGGAGTGTCTT-CCTCTT-GTCCTGATCATCAGGAACAGGTTGAAGTATGCTTTGA 199
|| ||||||||| || || ||| ||||| ||||||||||||||||||||||||||| |||
Sbjct 230 TCTAGGGAGTGT-TTACC-CTTGGTCCTTATCATCAGGAACAGGTTGAAGTATGCTCTGA 287
Query 200 CTTACCGTGAAGTTATCTCTATCTTGATGCAAAGGCATATCCAAGTTGATGGCAAAGTTA 259
| ||| | ||||| || || |||||||||||||||||||| || |||||||| ||||| |
Sbjct 288 CATACAGAGAAGTGATTTCGATCTTGATGCAAAGGCATATTCAGGTTGATGGGAAAGTGA 347
Query 260 GGACTGACAAGACTTACCCTGCTGGCTTT-ATGGATGTTGTATCCATCCCCAAGACCAAT 318
||||||||||||||||||||||||| ||| ||||||||||| || |||||||| || |||
Sbjct 348 GGACTGACAAGACTTACCCTGCTGG-TTTCATGGATGTTGTGTCTATCCCCAAAACAAAT 406
Query 319 GAGAACTTCCGTCTTCTCTACGACACCAAAGGACGTTTCCGTCTCCACTCCATCAAGGAT 378
||||||||||||||| | || |||||||| ||||||||||||||||||||||||||||||
Sbjct 407 GAGAACTTCCGTCTTTTGTATGACACCAAGGGACGTTTCCGTCTCCACTCCATCAAGGAT 466
Query 379 GAGGAATCAAAGTTCAAGCTTTGCAAGGTTAGATCTATCCAGTTTGGTCAGAAGGGAATT 438
||||| | ||||||||||||||||| || ||||| ||||| |||||||||||||| |||
Sbjct 467 GAGGAGGCTAAGTTCAAGCTTTGCAAAGTGAGATCGATCCAATTTGGTCAGAAGGGTATT 526
Query 439 CCTTTCTTGAACACTTATGATGGTCGCACCATCCGTTACCCTGACCCGCTCATCAAGCCA 498
|| | ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 527 CCCTACTTGAACACATATGATGGTCGCACCATCCGTTATCCTGACCCGCTCATCAAGCCT 586
Query 499 AACGACACCATCAAGCTGGACCTTGAGGAGAACAAGATTGTTGAGTTCATCAAGTTTGAC 558
||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 587 AACGACACCATCAAGCTCGACCTTGAGGAGAACAAGATTGTGGAGTTCATTAAGTTTGAT 646
Query 559 GTGGGTAATGTTGTGATGGTTACTGGAGGCAGAAACAGAGGGCGTGTTGGCGTGATCAAG 618
||||| || || || ||||| |||||||| |||||||||||||||||||| ||||| |||
Sbjct 647 GTGGGCAACGTAGTTATGGTCACTGGAGGAAGAAACAGAGGGCGTGTTGGTGTGATTAAG 706
Query 619 AACCGGGA-AAAGCATAAGGGAAGCTTTGAGACGATACACATTCAAGACTCAACAGGACA 677
||||| || ||| || ||||| |||||||| || || |||||||||||||||||||||||
Sbjct 707 AACCGTGAGAAA-CACAAGGGTAGCTTTGAAACCATCCACATTCAAGACTCAACAGGACA 765
Query 678 TGAGTTTGCCACAAGGTTGGGCAATGTGTTCACCATCGGCAAAGGAACAAAGCCATGGGT 737
||||||||| ||||||||||| ||||||| ||| ||||| || |||||||||||||||||
Sbjct 766 TGAGTTTGCAACAAGGTTGGGAAATGTGTACACAATCGGTAAGGGAACAAAGCCATGGGT 825
Query 738 GTCTCTTCCAAAGGGCAAAGGTATTAAGCTGACCATCATTGAGGAAGCTAGGAAGAGACT 797
||| ||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 826 GTCCCTTCCAAAGGGTAAAGGTATTAAGTTGACCATCATTGAGGAAGCCAGGAAGAGACT 885
Query 798 TGCTTCACAACAAGCT 813
| || | |||||||||
Sbjct 886 TTCTGCTCAACAAGCT 901
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53764783695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5