BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487534
Length=1864
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07120.1 | Symbols: SNX2b | sorting nexin 2B | chr5:2206894-... 2874 0.0
> AT5G07120.1 | Symbols: SNX2b | sorting nexin 2B | chr5:2206894-2209516
REVERSE LENGTH=2051
Length=2051
Score = 2874 bits (1556), Expect = 0.0
Identities = 1768/1869 (95%), Gaps = 19/1869 (1%)
Strand=Plus/Plus
Query 1 GCCACTCCGGTTATTTATTGCAGTTCACGATGACCGTATCCTCGTAATCTCCAATATCTC 60
||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 28 GCCACTCCGCTTATTTATTGCAGTTCACGACCACCGTATCCTCGTAATCTCCGTTATCTC 87
Query 61 GAATCGAATCGAAAAA-CCCCAAACTTCCTGTGAATTTATTACTAAAATTAGCTCA-CTT 118
||| |||||||||||| ||| ||| ||||||||||||||||||||||||||||||| |||
Sbjct 88 GAACCGAATCGAAAAATCCCTAAA-TTCCTGTGAATTTATTACTAAAATTAGCTCACCTT 146
Query 119 CATAGATTTATCGGAGATGATGGGTTCAGAGAATGACGACGAGTCCCATCTCCACTCGTC 178
||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||| ||
Sbjct 147 -ATAGATTTACCAGAGATGATGGGCTCAGAGAATGACGAAGAGTCCCATCTCCACTCATC 205
Query 179 CAAAGAAGAGATGGAGAATCTCTTTCTCCGCGAAGATGGCGATCCCTTGACCAGAAGCCA 238
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
Sbjct 206 CAAAGAAGAGATGGAGAAACTCTTTCTCCGCGAAGATGGCGATCCCTTGACCAAAAGCAA 265
Query 239 TGTCAACGGCGATAAATCTAACTCTAATTATCGCAGCGCTGTGTCAACTCTCTCCGACTC 298
|||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||||
Sbjct 266 TGTCAACGGCGATAAATCCAACTCTAATTATCGCAGCGCTATGTCAACTCTCTTCGACTC 325
Query 299 TCGTCATCCGTCGATTGTAGTAACTCCGGCTGACTCCGATCCACTTTTTGCGCCGCCGTC 358
||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| |||||
Sbjct 326 GCGTCACCCGTCGATTGTCGTAACTCCAGCTGATTCCGATCCACTTTTTGCGCCACCGTC 385
Query 359 TTACTACAGAGAATCTCGGAGCCCTCGTTCTAAACCAAACGGCGGCGACAGAGGT-AGCT 417
||||||||| ||||||||||| |||||||||||||||||||||||||||||| || ||||
Sbjct 386 TTACTACAGCGAATCTCGGAGTCCTCGTTCTAAACCAAACGGCGGCGACAGA-GTCAGCT 444
Query 418 CTTACCTCGAGCCTCCGTCTTACGCGGATGTTATCTTCAGTCCTTTCGATGATATTTCTG 477
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 445 CTTACCTCGAGCCTCCGTCTTACGCGGATGTTATCTTCAGCCCTTTCGATGATATCTCCG 504
Query 478 AGATCAACGGCTCAGAAGATGGCGGAAGCCGTCATAGTCAGTCCTCAGATTCATTATCTA 537
||||||| |||||||||||| | ||||||||||||| ||||||||||||||||
Sbjct 505 AGATCAATGGCTCAGAAGAT-------G--GTCATAGTCAGTCGTCAGATTCATTATCTA 555
Query 538 GATCTCCGTCTTCTTTGAGCTCCGATTACATCAAGATCACTGTTTCTAACCCTCAGAAAG 597
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 556 GATCTCCGTCTTCTTTGAGCTCTGATTACATCAAGATCACTGTTTCTAACCCTCAGAAAG 615
Query 598 AGCAAGAGGCCACAAATTCAATGATTCCTGGAGGAAGCACTTACATCACTTACCAGATTA 657
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 616 AGCAAGAGGCCACAAATTCAATGATTCCTGGAGGAAGTACTTACATCACTTACCAGATTA 675
Query 658 CAACTAGAACGAATCTCCCTGACTACGGCGGCTCGGAGTTTAGCGTTCGAAGAAGATTCA 717
||||||||||||||||| |||||||||| || |||||||||||||| | ||||||||||
Sbjct 676 CAACTAGAACGAATCTCTCTGACTACGGTGGATCGGAGTTTAGCGTGAGGAGAAGATTCA 735
Query 718 GAGACATTGTTACATTGGCTGATAGATTAGCTGAGTCGTATAGAGGGTTT-TGCATCCCA 776
||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||| |||
Sbjct 736 GAGACATTGTTACATTGGCTGATAGATTAGCTGAGTCTTATAGA-GGTTTCTGCATTCCA 794
Query 777 CCGAGGCCAGATAAGAGTGTTGTTGAGAGCCAAGTGATGCAAAAGCAAGAGTTTGTGGAG 836
|||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct 795 CCGAGGCCAGATAAGAGTATAGTTGAGAGTCAAGTGATGCAAAAGCAAGAGTTTGTGGAG 854
Query 837 CAGAGAAGAGTTTCATTGGAGAAGTATTTGCGCAGGCTTGTTGCACATCCTGTGATTAGG 896
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 855 CAGAGAAGAGTTGCATTGGAGAAGTATTTGCGTAGGCTTGTTGCACATCCTGTGATCAGG 914
Query 897 AACAGTGATGAATTGAAGGTTTTTCTTCAGGCGCAAGGGAAGTTACCGCTGGCTACGAGC 956
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 915 AACAGTGATGAATTGAAGGTTTTTCTTCAAGCGCAAGGGAAGTTACCGCTTGCTACGAGC 974
Query 957 ACTGATGTGGCTTCTAGGATGTTGGATGGTGCCGTGAAGCTGCCGAAGCAGCTGTTTGGT 1016
|| ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||
Sbjct 975 ACAGATGTGGCTTCTAGGATGTTGGATGGTGCTGTGAAGCTGCCGAAACAGTTGTTTGGT 1034
Query 1017 GAAGGCGGAGGAGCTTCTTCGGTTGAGGTGGTTCAGCCGGCTAGAGGAGGTAGAGATTTT 1076
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1035 GAAGGCGGTGGAGCTTCTTCGGTTGAGGTGGTTCAGCCGGGTAGAGGAGGTAGAGATTTT 1094
Query 1077 CTGAGATTGTTCAAAGAACTTAGACAGTCGGTCTCTAATGACTGGGGTGGATCAAAACCA 1136
|||||| |||| ||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1095 CTGAGAATGTTTAAAGAACTTAGACAGTCAGTTTCTAATGACTGGGGTGGATCAAAACCA 1154
Query 1137 CCTGTTGTGGAAGAAGATAAAGAGTTTTTGGAGAAGAAGGAGAAGATGTATGATCTTGAG 1196
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1155 CCTGTTGTGGAAGAAGATAAAGAGTTTTTGGAGAAGAAGGAGAAAATGTATGATCTTGAG 1214
Query 1197 CAACAGATCATTAATGCTTCACAGCAGGCTGAATCCCTCGTGAAGGCACAGCAAGACATG 1256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 CAACAGATCATTAATGCTTCACAGCAGGCTGAATCCCTCGTGAAGGCACAGCAAGACATG 1274
Query 1257 GGGGAGACTATGGGGGAAATGGGATTAGCATTCATTAAGCTGACGAAATTCGAGAACGAG 1316
|||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1275 GGGGAGACTATGGGGGAATTGGGATTAGCATTCATTAAACTGACGAAATTCGAGAACGAA 1334
Query 1317 GAAGCTGTCTTCAATTCTCAAAGAGCTCGTGCCAATGATATGAAGAATTTTGCCACTTCA 1376
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1335 GAAGCTGTCTTCAATTCTCAAAGAGCTCGTGCCAATGATATGAAGAATTTAGCCACTTCA 1394
Query 1377 GCAGTAAAAGCAAGCAGATTTTACAGAGAGCTGAATTCCCAGACGGTCAAGCATTTGGAC 1436
|| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1395 GCTGTGAAAGCAAGCAGATTTTACAGAGAGTTGAATTCCCAGACGGTCAAGCATTTGGAC 1454
Query 1437 ACACTCCACGACTACCTTGGCCTAATGATGGCAGTCCAGGGCGCCTTTGCAGATAGATCT 1496
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1455 ACACTCCACGATTACCTTGGCCTAATGATGGCAGTCCAGGGCGCCTTTGCAGATAGATCT 1514
Query 1497 AGTGCGTTACTGACAGTGCAGACGCTTCTATCTGAGCTTTCTTCACTTGGA-GCAAGAGC 1555
||||| ||| ||||||||||||||||||||||||| ||||||||||| ||| ||||||||
Sbjct 1515 AGTGCTTTATTGACAGTGCAGACGCTTCTATCTGAACTTTCTTCACT-GGAAGCAAGAGC 1573
Query 1556 AGAGAAGCTAGAAGCTGCATCATCAAAGGTCTTTGGCGGTGACAAATCAAGGATTAAGAA 1615
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1574 AGAAAAGCTAGAAGTTGCATCATCAAAGGTCTTTGGCGGTGACAAATCAAGGATTAAGAA 1633
Query 1616 GATAGAAGAGTTAAAAGAAACCATCAAGGTCACTGAGGACTCCAAAAATGTTGCGATCAG 1675
|||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 1634 GATAGAAGAGTTAAAAGAAACCATCAAGGTCACTGAAGACTCTAAAAATGTTGCCATCAG 1693
Query 1676 GGAGTACGAGCAGATCAAGGAAAATAACTGGTGTGAGGTTGAAAGGCTGGACAGGGAAAG 1735
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1694 GGAGTACGAGCAGATCAAGGAAAATAACTGGAGTGAGGTTGAAAGGCTGGATAGGGAAAG 1753
Query 1736 GCGTGCAGACTTCTTGAATATGATGAAAGGGTTTGTTGTTAATCAGGTTGGATATGCAGA 1795
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1754 GCGTGCAGACTTCTTGAATATGATGAAAGGGTTTGTTGCTAATCAGGTTGGATATGCAGA 1813
Query 1796 GAAGATCGCCAATGTGTGGACAAAGGTTGCTGAGGAGACAAGTCAATACGGTAGAGAGAG 1855
|||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||
Sbjct 1814 GAAGATCGCCAATGTGTGGACAAAGGTTGCTGAGGAAACAAGGCAATACGATAGAGAGAG 1873
Query 1856 CTCTTAACA 1864
|||||||||
Sbjct 1874 CTCTTAACA 1882
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92268601710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5