BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487536
Length=2158
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07140.1 | Symbols: | Protein kinase superfamily protein | ... 3282 0.0
> AT5G07140.1 | Symbols: | Protein kinase superfamily protein
| chr5:2212826-2215530 FORWARD LENGTH=2200
Length=2200
Score = 3282 bits (1777), Expect = 0.0
Identities = 2042/2169 (94%), Gaps = 21/2169 (1%)
Strand=Plus/Plus
Query 1 TTTTCAAGTAGAAGAGACCCAAACTTCGTTACCTTCGCCGCCATGGCCTCCGCACTCGAA 60
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 10 TTTTCAAGTAGAAGAGACACAAACATCGTTACCTTCGCCGCCATGGCCTCCGCACTCGAA 69
Query 61 TGCTGGACCACCCGTAATGCCGATGGTGGTTGCGCCGACGACGATTTCGTTGACCAAGTC 120
|||||||| || |||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 70 TGCTGGACAACACGTAATGCCGCCGGTGGTTGCGCCGACGACGATTTTGTTGACCAAGTC 129
Query 121 CTCATGTGCTCTGACGACAGGTCTGAGTCCCTCACTGCTGCTCCACCTTCCGATCAAACC 180
|| |||| ||| || |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 130 CTAATGTCCTCCGAAGACAGGTCTGAGTCCCTCACTGCTCCTCCACCTTCCGATCAAACC 189
Query 181 TCTTCCGCTATGCAAAAGCGGTTTCAGCGTCTCGGCCGCAACGTCTCCGACGCGATCGCG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 TCTTCCGCTATGCAAAAGCGGTTTCAGCGTCTCGGCCGCAACGTCTCCGACGCGATCGCG 249
Query 241 TCTCTCAAGAACTCTCTCAACCTCGATTCGGGTCGAGACAACCAAAATGCAGCCACCGGA 300
|| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 250 TCGCTCAAGAACTCTCTCAACCTCGATTCGAGTCGAGACAACCAAAATGCAGCTACCGGA 309
Query 301 GGAGGTAGGAAGCTCGTATGGGCCACTGTTGTGAGAAACCTTGCTAAAATGTATCCCGGA 360
|||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 310 GGAGGTAGAAAGCTCGTATGGGCTACTGTAGTGAGAAACCTTGCTAAAATGTATCCTGGA 369
Query 361 AGTCAGTTGCCTGATAAACTCGTCTCTAACCTCCGGAAGCATTACGATTCTTTGCCTCTC 420
|| ||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 370 AGCCAGTTGCCTGATAAACTCGTCTCCAATCTCCGAAAGCATTACGATTCTTTGCCTCTC 429
Query 421 AGTTATAGTCAGACTGGTTTCGATATGAAAGATGTATTTGTACACATAAAGTTGATAGAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 AGTTATAGTCAGACTGGTTTCGATATGAAAGATGTATTTGTACACATAAAGTTGATAGAG 489
Query 481 CAAGCTTCTGGAGATGATAATCCTGTGTTTTTGATTCAAGAGGTGTGTGATGAGGAAGCT 540
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 490 CAAGCTTTTGGAGATGATAATCCTGTGTTTGTGATTCAAGAGGTGTGTGATGAGGAAGCT 549
Query 541 TATGAGCAGGGTTCTGTGTTCAAGCTCACATTTGCTTCTACTTCTTCGCTTCCGTGGTCA 600
|||| |||||||||||||| |||||||||||||||| ||||| ||| ||||| ||||||
Sbjct 550 GATGATCAGGGTTCTGTGTTTAAGCTCACATTTGCTTGTACTTGTTCCCTTCCATGGTCA 609
Query 601 ACCATTTCAGGGTCTCTTGATTGTGCTTCGATTTGTTGTAAGAAAGTACAAATATTTGAG 660
||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||
Sbjct 610 ACCATTTCAGGGTCTCTTGATGGTGCTTTGATTTGTTGTAAGAAAGTACAAATCTTTGAG 669
Query 661 AAGAAAGGGTTGACTCTCGGAGTTGTTCTTCTTTTGGTAGAGTCTGGACAAGAGAAGTTG 720
||||| ||||||||||| ||||||||||||||| |||| |||||||||||||| || ||
Sbjct 670 AAGAAGGGGTTGACTCTTGGAGTTGTTCTTCTTCTGGTTGAGTCTGGACAAGAAAAAATG 729
Query 721 TTCAAAATTAAGGTAGAGAATGCCCTTAGATCTGCGGTGAGGAAGCCTAAGTCAACCTCT 780
|||||| ||||||| | |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 730 TTCAAAGTTAAGGTTGTGAATGCCCTTAGATCTGCGGTGAGGAAGCCCAAGTCAACCTCT 789
Query 781 GTGAAGCTCCCTTTTGGTCTTTGCGGTTGTCAAGAACAGAATGCGGGTGTAGGAGAATTC 840
||||||||||| ||||||||||| || ||| ||||||||||||| ||||| |||||||||
Sbjct 790 GTGAAGCTCCCATTTGGTCTTTGTGGCTGTGAAGAACAGAATGCTGGTGTTGGAGAATTC 849
Query 841 GGGGATGTTGATGTGGAGTCCATTGATCAATGCTATAGACACGAATTGGATGATCTGAAT 900
|||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 850 GGGGATGTTGATGTGGAGTCCATTGATCAATGTTATAGACATGAGTTGGATGATCTGAAT 909
Query 901 ACTAGGATCCAGCTGCAAATGCCACCTCCAAGCTCTTCGTTTTCTGTATCTGTGGATGAA 960
|||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 910 ACTAGGATTCAGCTTCAAATGCCACCTCCAAGCTCTTCGTTTTCTGTATCAGTAGATGAA 969
Query 961 TGGCAGACCATCCAATCAGGTGGTGATGATAT-AGGAAAATGGCTACTGAATTCAGATGA 1019
|||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 970 TGGCAGACTATCCAATCAGGTGGTGATGATATCAG-AAAATGGCTACTGAATTCAGATGA 1028
Query 1020 TCTCGAGTTTGGTGGTCAGTTAGGACCAAATTCTTTTAAAGGAGTTTACAGAGGAATCAA 1079
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 1029 TCTCGAGTTTAGTGGTCAGTTAGGACCAAATTCATTTAAAGGAGTTTACAGAGGAA-CAA 1087
Query 1080 -GGTGGCCATTGAGAAACTAAAAGGCTGTGAAAAGGGAAATTCCTATGAGTTTG-AGATC 1137
|||||||||||||||||||||||||||||| ||||| |||||||||||||||| | |||
Sbjct 1088 AGGTGGCCATTGAGAAACTAAAAGGCTGTGAGAAGGGGAATTCCTATGAGTTTGCA-ATC 1146
Query 1138 CGAAAAGATTTCTTGGAGCTGATGACCTGTGGACACAAGAGCATTCTGCAGTTTTATGGT 1197
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1147 CGAAAAGATTTCTTGGAGCTGATGACCTGTGGACACAAGAGCATTTTGCAGTTTTATGGT 1206
Query 1198 GTCTGCATCGACGAAAATCATGGATTATGCGTGGTAACAAAGTTGATGCAAGGTGGCTCA 1257
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1207 GTCTGCATCGATGAAAATCATGGATTATGCGTGGTAACAAAGTTGATGCAAGGTGGTTCA 1266
Query 1258 CTCCGTGAACTGGTGTTGAAGAAAAAGAAGCTTCAGACCAAGGTGATATTTCAAATTGCT 1317
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1267 CTTCGTGAACTGGTGTTGAAGAAAAAGAAGCTTCAGACCAAGTTGATATTTCAAATTGCT 1326
Query 1318 GTTGACATAGCAGAAGCTATGAAGTTCATTAACGATCATGGTGTCGCATATAGAGACCTT 1377
|||||||||||||||| ||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 1327 GTTGACATAGCAGAAGGGATGAAATTCATTAATGATCATGGTGTTGCATATAGAGACCTT 1386
Query 1378 AACACACAAAGAATACTATTAGATAAGCAGGGCAACGCCTGTTTGGGTGATTTGGGAGTA 1437
|||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||| ||
Sbjct 1387 AACACACAGAGAATACTATTAGATAAGCAGTGCAACGCTTGTTTGGGTGATTTGGGAATA 1446
Query 1438 GTCACTGCATGCAAGAGTGTCAGCGAGGCCATGGAGTATGAAACAGATGGCTATCGATGG 1497
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 1447 GTCACTGCATGCAAGAGTGTCAACGAGGCCATGGAGTATGAAACGGATGGCTATCGATGG 1506
Query 1498 CTTGCACCCGAGATAATCGCGGGCGACCCGGAGAAGACAAGAGAGAGTTGGATGAGCAAT 1557
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1507 CTTGCACCCGAGATAATCGCGGGAGACCCGGAGAAGACAAGAGAGAGTTGGATGAGCAAT 1566
Query 1558 GCGTATAGCTTTGGGATGGTGCTTTGGGAGATGGTGACAGGGGAGGAGGCGTATGGGTCT 1617
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1567 GCGTATAGCTTTGGGATGGTGCTTTGGGAGATGGTGACAGGGGAGGAGGCATATGGGTCT 1626
Query 1618 TGCTCGCCAGTGCAGGCAGCGGTTGGGATTGCAGCGTGTGGGCTAAGACCAGAGATCCCA 1677
||||| |||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 1627 TGCTCACCAGTGCAGGCAGCGGTTGGGATTGCAGCGTGCGGACTAAGACCAGATATCCCA 1686
Query 1678 AAGGAGTGTCCTCAAGTCCTCAGATATCTTATGACCAAATGCTGGAACACTTGCCCTTCC 1737
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 1687 AAGGAGTGTCCTCAAGTCCTCAAATATCTTATGATCAAATGCTGGAACACTTGCCCTTCC 1746
Query 1738 ACACGCCTTAACTTCTCTCAAATCCACTGCATCTTGCTCCGTGCCATCTCACGGTAACAC 1797
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1747 ACACGCCTTAACTTCTCTCAAATCCACTGCATCTTGCTCCGTGCCATTTCACGGTAACAC 1806
Query 1798 ACTCTCTTCTACATAGGAATTGGAAGAGTGCCTCCTTTTTTGAAGAAATCTTTTAGCAAA 1857
| |||||||||||||||||||||||||||||||| ||||| |||||||| ||| ||||||
Sbjct 1807 ATTCTCTTCTACATAGGAATTGGAAGAGTGCCTC-TTTTT-GAAGAAATGTTT-AGCAAA 1863
Query 1858 CCAATAGTTTTTGTAGGTAAGAGAATAGCTTCACATCAATATAGCAA-TGGTGATGAAGA 1916
|||||||||||||| ||||| |||||||||||||||||||||||||| || |||||||||
Sbjct 1864 CCAATAGTTTTTGTGGGTAACAGAATAGCTTCACATCAATATAGCAAATG-TGATGAAGA 1922
Query 1917 AAGTGGTTGGTGTATATTT-GGTTAGATCAGATGGTAGCAACCTTGTGGACCGGAAAGTA 1975
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1923 AAGTGGTTGGTGTATATTTTGGTTAGATCAGATGGTAGCAACCTTGTGGACCGGAAAGTA 1982
Query 1976 GAGTAACAGATTCATTATAAAGTC-TAAGCCTCTTTGCCAATGCCCACTTTCATTTTTAC 2034
|| |||||| |||||||| | || |||||||||||||| | | ||||||||||||||||
Sbjct 1983 GAATAACAGTTTCATTATCA-GTTATAAGCCTCTTTGCCCA-GTCCACTTTCATTTTTAC 2040
Query 2035 ACTTTGTTTACATTGTAAATGGACCAATATGAGTGATCtttttttCTTATAATT----A- 2089
||||||||||||||||||||||||||||||||||||| |||||||||| | || |
Sbjct 2041 ACTTTGTTTACATTGTAAATGGACCAATATGAGTGAT-TTTTTTTCTTTTCTTTTTCTAT 2099
Query 2090 AAGAAAAAACAGGTACGAATGTTAGATTTCAAATTAGAAATGTTCAAGATTGTGTATGGA 2149
||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||
Sbjct 2100 AAGAAAAAACAGGTACGAATGTTCGATTTCAAACTAGAACTGTTCAAGATTGTGTATGGA 2159
Query 2150 TTGGCTCCT 2158
|||| ||||
Sbjct 2160 TTGGATCCT 2168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107027561940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5