BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487537
Length=1524
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07150.1 | Symbols: | Leucine-rich repeat protein kinase fa... 1672 0.0
AT5G07152.1 | Symbols: | Potential natural antisense gene, loc... 342 5e-93
> AT5G07150.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr5:2215820-2217983 FORWARD LENGTH=1662
Length=1662
Score = 1672 bits (905), Expect = 0.0
Identities = 1011/1063 (95%), Gaps = 4/1063 (0%)
Strand=Plus/Plus
Query 464 CTCAGCCTCCACCAGTTCCCCCTCCACCAGCTCAGCTTTCAGATGTCCCTGATGATGCCA 523
||||||||||||||| || |||||||| |||||||||| || || ||| ||| || ||
Sbjct 602 CTCAGCCTCCACCAGCTCAGACTCCACCACCTCAGCTTTCTGAAGTGCCTCATGCTGTCA 661
Query 524 ACAAGAAGACATCTCAAAAGACTAAGACT-TACATAATAGTCGGAGTGCTAGTAGGTGTA 582
|||| |||| |||||| |||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 662 ACAAAAAGAAATCTCATAAGAGTAAGA-TGTACATAATAGTCGGAGTGCTAGTAGGTGTA 720
Query 583 TTTGCCGTCATGGCCGTATTGGTGGCCTTCTTTTTTCTCTGGAACCAAAAGGTAAAAATG 642
|| | ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 721 TTAGGCGTCATGGCCGCATTGGTGGCCTTCTTTTTTCTCTGGAACCAAAAGGTAAAATTG 780
Query 643 ATAAAGCCAT-GGGGGACAACTGGGAGCAGTGGAGAGCTTCAAGATATTGCTACTACAGG 701
|||||||||| |||||| ||||||||||||||| ||||||||||| ||| |||||||||
Sbjct 781 ATAAAGCCATGGGGGGA-AACTGGGAGCAGTGGCCAGCTTCAAGATGTTGTTACTACAGG 839
Query 702 TGTTCCTAAGCTGAAGCTAGCAGAACTAGAAACTGCCTGTGAAGATTTCAGTAACATCAT 761
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGTTCCCAAGCTGAAGCTAGCAGAACTAGAAACTGCCTGTGAAGATTTCAGTAACATCAT 899
Query 762 AGGCTCCACATCCTCAGACGCCACCATTTACAAAGGAACTCTCTCCACCGGCTCTGAAAT 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 AGGCTCCACATCCTCAGACGCCACCATTTACAAAGGAACTCTCTCCACCGGCTCTGAAAT 959
Query 822 CGCCGTTCTAGCAGTCGCATCTGGATCCCTCCAGGACTGGTCAGTGGATCATGAAACACA 881
|||||||||||||| ||||||||||||||||| |||||||||| |||||| ||||||||
Sbjct 960 TGCCGTTCTAGCAGTTGCATCTGGATCCCTCCAAGACTGGTCAGAGGATCACGAAACACA 1019
Query 882 GTTCCAAGAAAAGAGGTTATCTCAAGTGAACCACAAGAACTTCCTCAATGTAATCGGATA 941
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GTTCCAAGAAAAGAGGTTATCTCAAGTGAACCACAAGAACTTCCTCAATGTAATCGGATA 1079
Query 942 TTGCCATGAAGACGAGCCATTCAACCGAATGCTAGTTTTCGAATACGCTCCTAACGGATC 1001
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1080 TTGCCATGAAGACGAACCATTCAACCGAATGCTAGTTTTCGAATACGCTCCTAATGGATC 1139
Query 1002 CCTCTTTGAGCATCTGCACGACCAAGACGCAGAGCATTTGGACTGGCCAATGAGACTAAG 1061
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1140 CCTCTTCGAGCATCTGCACGACCAAGACGCAGAGCATTTGGACTGGCCAATGAGACTGAG 1199
Query 1062 AATCGTAATGGGAATAGCTTACTGTATGGAACATATGCACAATCTAAACCCTAAACCCAT 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AATCGTAATGGGAATAGCTTACTGTATGGAACATATGCACAATCTAAACCCTAAACCCAT 1259
Query 1122 CTCTCACACCAACCTCAACTCTTCTTCAGTCTACTTAGCAACAGATTACGCAGCCAAAGT 1181
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1260 CTCTCACACCAACCTCAACTCTTCTTCAGTCTACTTGGCAACAGATTACGCAGCCAAAGT 1319
Query 1182 CTCAGACTTTACTTTCCTCAGCTCCACACCACTTGACCCCATGACCAACGTATCCAGCTT 1241
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1320 CTCAGACTTTACGTTCCTCAGCTCCACACCACTTGACCCCATGACCAACGTATCCAGCTT 1379
Query 1242 TGGCGCCCTTCTGCAAGAGATCATCACCGGAAAGATCCCGGATCCGGATTCTCAGCTCCA 1301
|||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct 1380 TGGCGCCCTTCTACAAGAGATCATCACCGGAAAGATCCCGGATCCAGATTCTCTGCTCCA 1439
Query 1302 CGACGAAACCAAGCCCGTTGCAGACCCGTCTCTGAAAAGCTTTCAAGAGGATGTCATGGA 1361
|| |||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1440 GGAAGAAACCAAACCCGTTGCAGACCCGACTCTGAAAAGCTTTCAAGAGGAGGTCATGGA 1499
Query 1362 GAGACTGTGGGAAGTGGTTAAAGAGTGTTTGAGTCAGAAGCTGGAAATGAAGGAAGTGGT 1421
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1500 GAGAGTGTGGGAAGTGGTTAAAGAGTGTTTGAGTCAGAAGGTGGAAATGAAGGAAGTGGT 1559
Query 1422 GGTTAAGCTGAGAGAGATCACCGGAATAACGGCGGAAGCAGCGTTGCCAAGTCGATCTCC 1481
||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||
Sbjct 1560 GGTTAAGCTGAGAGAGATCACCGGAATAACGCCGGAAGCAGCGTTGCCTAGTCGGTCTCC 1619
Query 1482 GGCGTGGTGGGCGGAGCTGGAGATTATATCCACCGAAATGTAG 1524
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 GGCGTGGTGGGCGGAGCTGGAGATTATATCCACCGAAATGTAG 1662
Score = 701 bits (379), Expect = 0.0
Identities = 412/428 (96%), Gaps = 1/428 (0%)
Strand=Plus/Plus
Query 1 ATGAGTTCCGATCAACGGTGGAGATTGCTCCGACCAGCATTCTCCATCCTCTTCTTTCTC 60
||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||
Sbjct 1 ATGAGTTCCGATCAACGGTGGAGATTGCTCCGACCAGCATTCTTCATCTTCTTCTTCCTC 60
Query 61 TTCTTTCTTCCTCACAATCTCACCTTTGGTCTCTGTTTTAGCACCGATGCATTGGCCTTG 120
|||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||
Sbjct 61 TTCTTTCTTCCTCACAATCTCACCTTTGGTCTCTGTTTCAACACCGAAGCATTGGCCTTG 120
Query 121 ATGAAATTTAAagagagaatagagagagaCCCATTTGGAGCTCTAATGAATTGGGGAGAG 180
|||||||| |||||||||||||||| |||||||||||||||||| | ||||||||||||
Sbjct 121 ATGAAATTCAAAGAGAGAATAGAGATAGACCCATTTGGAGCTCTGGTTAATTGGGGAGAG 180
Query 181 CTTTCTCATTGTTCTTGGTCTGGTGTTGTCTGTTCAAATGATGGAAGAGTTGTCATCTTA 240
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 181 CTTTCTCATTGTTCTTGGTCTGGTGTTGTCTGTTCACATGATGGAAGAGTTGTCATCTTA 240
Query 241 AATCTAAGAGATCTCTCCCTACAAGGAACACTTGCACCTGAACTAGGAAACCTAACTCAC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AATCTAAGAGATCTCTCCCTACAAGGAACACTTGCACCTGAACTAGGAAACCTAACTCAT 300
Query 301 TTGAAATCTCTTATTCTAAGAAACAATTCATTTTTCGGGAAAGTACCTGAAGAGGTAACA 360
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 301 TTGAAATCTCTTATTCTCAGAAACAATTCATTTTCCGGGAAAGTACCTGAAGAGGTAACA 360
Query 361 GAATTGCAGGAGCTTGAGATCTTGGATTTGTGTGACAACAACTTTGGCCAACCATTTCCC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GAATTGCAGGAGCTTGAGATCTTGGATTTGTGTGACAACAACTTTGGCCAACCATTTCCC 420
Query 421 TTCAGCTC 428
||| ||||
Sbjct 421 TTC-GCTC 427
> AT5G07152.1 | Symbols: | Potential natural antisense gene, locus
overlaps with AT5G07150 | chr5:2216873-2217812 REVERSE
LENGTH=842
Length=842
Score = 342 bits (185), Expect = 5e-93
Identities = 194/198 (98%), Gaps = 1/198 (1%)
Strand=Plus/Minus
Query 1016 TGCACGACCAAGACGCAGAGCATTTGGACTGGCCAATGAGACTAAGAATCGTAATGGGAA 1075
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 239 TGCA-GACCAAGACGCAGAGCATTTGGACTGGCCAATGAGACTGAGAATCGTAATGGGAA 181
Query 1076 TAGCTTACTGTATGGAACATATGCACAATCTAAACCCTAAACCCATCTCTCACACCAACC 1135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TAGCTTACTGTATGGAACATATGCACAATCTAAACCCTAAACCCATCTCTCACACCAACC 121
Query 1136 TCAACTCTTCTTCAGTCTACTTAGCAACAGATTACGCAGCCAAAGTCTCAGACTTTACTT 1195
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 120 TCAACTCTTCTTCAGTCTACTTGGCAACAGATTACGCAGCCAAAGTCTCAGACTTTACGT 61
Query 1196 TCCTCAGCTCCACACCAC 1213
||||||||||||||||||
Sbjct 60 TCCTCAGCTCCACACCAC 43
Score = 329 bits (178), Expect = 4e-89
Identities = 190/196 (97%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 699 AGGTGTTCCTAAGCTGAAGCTAGCAGAACTAGAAACTGCCTGTGAAGATTTCAGTAACAT 758
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 AGGTGTTCCCAAGCTGAAGCTAGCAGAACTAGAAACTGCCTGTGAAGATTTCAGTAACAT 660
Query 759 CATAGGCTCCACATCCTCAGACGCCACCATTTACAAAGGAACTCTCTCCACCGGCTCTGA 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 CATAGGCTCCACATCCTCAGACGCCACCATTTACAAAGGAACTCTCTCCACCGGCTCTGA 600
Query 819 AATCGCCGTTCTAGCAGTCGCATCTGGATCCCTCCAGGACTGGTCAGTGGATCATGAAAC 878
||| |||||||||||||| ||||||||||||||||| |||||||||| |||||| |||||
Sbjct 599 AATTGCCGTTCTAGCAGTTGCATCTGGATCCCTCCAAGACTGGTCAGAGGATCACGAAAC 540
Query 879 ACAGTTCCAAGAAAAG 894
||||||||||||||||
Sbjct 539 ACAGTTCCAAGAAAAG 524
Score = 222 bits (120), Expect = 7e-57
Identities = 126/129 (98%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 893 AGAGGTTATCTCAAGTGAACCACAAGAACTTCCTCAATGTAATCGGATATTGCCATGAAG 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 449 AGAGGTTATCTCAAGTGAACCACAAGAACTTCCTCAATGTAATCGGATATTGCCATGAAG 390
Query 953 ACGAGCCATTCAACCGAATGCTAGTTTTCGAATACGCTCCTAACGGATCCCTCTTTGAGC 1012
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 389 ACGAACCATTCAACCGAATGCTAGTTTTCGAATACGCTCCTAATGGATCCCTCTTCGAGC 330
Query 1013 ATCTGCACG 1021
|||||||||
Sbjct 329 ATCTGCACG 321
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75200416410
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5