BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487538

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G07160.1 | Symbols:  | Basic-leucine zipper (bZIP) transcrip...   627    4e-179


> AT5G07160.1 | Symbols:  | Basic-leucine zipper (bZIP) transcription 
factor family protein | chr5:2219971-2220709 REVERSE 
LENGTH=453
Length=453

 Score =  627 bits (339),  Expect = 4e-179
 Identities = 418/456 (92%), Gaps = 6/456 (1%)
 Strand=Plus/Plus

Query  1    ATGAGCTTCCCTGTGGTTGCGACATCGTTTGGAGTGTCCCAAAGTGGCAGCCAAGCGGGA  60
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGAGTTTCCCTGTGGTTGCGACATCGTTTGGAGTGTCCCAAAGTGGCAGCCAAGCGGGA  60

Query  61   GAGAAGAAAGGTGGCTACGTCCACTATGAAGTTGAGCCAGGCTTCACCATTCGTATGCGT  120
             ||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||
Sbjct  61   AAGAAGAAAGGTGGTTACGTCAACTATGAAGTCGAGCCAGGCTTCACCATTCGTATGCGT  120

Query  121  CACGA-TATTGATCCTACCACGGACCCTAAGAAACTCAAACGGATAATTTCAAACCGTGT  179
            || || ||||||||| |||||||||||||||| |||||||||||||||||| ||||||||
Sbjct  121  CA-GAATATTGATCCCACCACGGACCCTAAGATACTCAAACGGATAATTTCGAACCGTGT  179

Query  180  GGCGGCTCAGAAGTCAAGGTGGAAGAAGGTTCAATATATTGATGCTCTAGTGAAGAGATC  239
             |||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  180  TGCGGCTCAAAAGTCTAGGTGGAAGAAGGTTCAATATCTTGATGCTCTAGTGAAGAGATC  239

Query  240  CATGGAGCTCCAAGGACAAGTGAGC-ATGTTGCGTTCCGAACTAGCGAT-AGCGAGTGAG  297
            ||||||||||||| || | |||||  | |||||||||| |||||||||| | | ||||| 
Sbjct  240  CATGGAGCTCCAAAGAGAGGTGAGTGA-GTTGCGTTCCCAACTAGCGATTACC-AGTGAA  297

Query  298  CACAAGCGACGTCTAGAAAATGAGCAAAGGCAGCTAAAGGAGTGTATCTCTGCTCGGGTG  357
            || || |||  |||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  298  CAAAAACGATATCTAGAAAATGAGCAAAGGCAGCTAAAGGAGTGTATCTCTGCTCGGGTT  357

Query  358  CAACATTGTATTGACAGCGATGGTGTCATTGAGGAGTGTAAAGCGGAGATTGAGAGGCTG  417
            |||||||||||  |||||||||||||||||||||||| |||| ||||||| |||||||||
Sbjct  358  CAACATTGTATCAACAGCGATGGTGTCATTGAGGAGTATAAAACGGAGATAGAGAGGCTG  417

Query  418  AAGAAGAATCTGGCTCCACTCTCGAATCTTTCTTAG  453
            |||| |||||||||||||||||| |||||| |||||
Sbjct  418  AAGACGAATCTGGCTCCACTCTCCAATCTTACTTAG  453



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21564864321


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5