BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487542
Length=689
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07190.1 | Symbols: ATS3 | seed gene 3 | chr5:2237562-223866... 1007 0.0
> AT5G07190.1 | Symbols: ATS3 | seed gene 3 | chr5:2237562-2238662
FORWARD LENGTH=864
Length=864
Score = 1007 bits (545), Expect = 0.0
Identities = 627/668 (94%), Gaps = 0/668 (0%)
Strand=Plus/Plus
Query 1 AACACACACAAATCTCTGAACTAAAATGACATTCCCTTCACTCTCTGCCTCATTTCTCTT 60
|||||||||||||||||||| ||||||||| |||||||| || |||| ||||||||||||
Sbjct 24 AACACACACAAATCTCTGAAGTAAAATGACGTTCCCTTCTCTTTCTGTCTCATTTCTCTT 83
Query 61 CTTGGCCTTCGTCTTCGTTACGCATGCATTCGACCTCAGCATCATCCAGATGCAACAGGG 120
||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 84 CTTTGCCTTCATATTCGTTACGCATGCATTCGACCTCAGCATCATCCAGATGCAACAGGG 143
Query 121 AACATGTCCGTACACAGTGGTTGTCATGACAAGCTGCCTTTCTCCGGAGTCGACAAGAGA 180
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 144 AACATGTCCGTACACGGTGGTTGTCATGACAAGCTGTCTTTCTCCGGAGTCGACAAGAGA 203
Query 181 TCAGATCAGCATCGTTTTTGGCGATGCCGATGGTAACAAGGTGTATGCACCGAAACTAGG 240
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 204 TCAGATCAGCATTGTTTTTGGCGATGCCGACGGTAACAAGGTGTATGCACCGAAACTAGG 263
Query 241 CGGTTCCGTAAGAGGAGCAGGGGGTTTAGGGAAGTGTTCCACGAACACATTCCAAGTGAG 300
|||| ||||||||| |||||||||| ||||||||||| ||||||||||||||||| ||
Sbjct 264 GGGTTTGGTAAGAGGACCAGGGGGTTTGGGGAAGTGTTCAACGAACACATTCCAAGTCAG 323
Query 301 AGGTCAATGTCTGAATGACCCTATCTGCTCTCTCTATATCAACCGGAATGGACCCGACGG 360
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 AGGTCAATGTTTGAATGACCCTATCTGCTCTCTCTATATCAACCGGAATGGACCCGACGG 383
Query 361 TTGGGTCCCGGAGTCCATCGAAATCTACTCAGAAGGTTCAAAGTCCGTTAAATTCGACTT 420
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||
Sbjct 384 TTGGGTCCCGGAGTCCATTGAGATCTACTCAGAAGGTTCAAAGTCCGTTAAATTCGATTT 443
Query 421 CAGCAAGAGCGTCCCTCAAATAAACACTTGGTACGGCCACAACAACTGCAACACCACAGG 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 444 CAGCAAGAGCGTCCCTCAACTAAACACTTGGTACGGCCACAACAACTGCAACACCACAGG 503
Query 481 CAGACCATCGTCTCCCGATTTGCCTCCGCCGCAATTTCCGCCAGAATTTCCACCGGAGAC 540
||||||||||||||||||| ||||||| || || ||||||||||| ||||||||||||||
Sbjct 504 CAGACCATCGTCTCCCGATCTGCCTCCACCACATTTTCCGCCAGAGTTTCCACCGGAGAC 563
Query 541 ACCTGCAATCCCGCCGCCGCCTCCACCAAGGCCGTCTGCTGCTGCAAGGCTTGGAGATGG 600
|||| | | ||| |||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 564 ACCTACCACCCCACCGCCGCCTCCACCAAGGCCGTCTGCTGCTTCAAGGCTTGGAAATGG 623
Query 601 TGAGAGTGTTTTCCTTGCGTTTGTCATTGCGACTGCGATCGCTGCAATAGTTCGTTGGAC 660
||||||||||||||||||||||| ||||||||||||||| || ||||| || |||||||
Sbjct 624 TGAGAGTGTTTTCCTTGCGTTTGCCATTGCGACTGCGATTGCCGCAATGGTGCGTTGGAG 683
Query 661 TTACTAGC 668
||||||||
Sbjct 684 TTACTAGC 691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33355473608
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5