BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487543
Length=1476
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07200.1 | Symbols: YAP169, GA20OX3, ATGA20OX3 | gibberellin... 2017 0.0
AT1G60980.1 | Symbols: ATGA20OX4, GA20OX4 | gibberellin 20-oxid... 856 0.0
> AT5G07200.1 | Symbols: YAP169, GA20OX3, ATGA20OX3 | gibberellin
20-oxidase 3 | chr5:2243553-2245339 REVERSE LENGTH=1607
Length=1607
Score = 2017 bits (1092), Expect = 0.0
Identities = 1274/1360 (94%), Gaps = 20/1360 (1%)
Strand=Plus/Plus
Query 1 CCCAAATGCCGCTTACGTACTATTCCCTGCACCTAAAGTTTCCCTCTCACACCTATAAAT 60
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| ||
Sbjct 1 CCCAAATGCCGCTTACGTACTATTCCCTGCACCT-AAGTTTCCCTCTCGCACCTATATAT 59
Query 61 ACCTCTCTTTTCCTCGATCCCACTTACGGACCAC--TA---AA-ATATAAGCCCCTCAAC 114
||| ||| ||||||| |||||||||| |||||| || || | |||||| ||||||
Sbjct 60 ACCACTCCTTTCCTC--TCCCACTTACCGACCACTGTACTGAATCTTTAAGCCTCTCAAC 117
Query 115 GT-TATTTTTATATATA--TTGAAAACCTTTTAAGCCTCTTAAAAGGATCTACGATAATT 171
|| | |||||||||||| ||||||| |||||| | | ||||||||||||||||||||||
Sbjct 118 GTGT-TTTTTATATATATTTTGAAAATCTTTTACG-C-CTTAAAAGGATCTACGATAATT 174
Query 172 -TTAAAAAATGGCAATGGAATGCATAGCAACGGTCCCTCAAAGATTTAGTGAAAACAAGA 230
|||||||||||| ||||||||| |||||||||||||||| ||| ||||||||||| |
Sbjct 175 AAAAAAAAATGGCAACGGAATGCATTGCAACGGTCCCTCAAATATTCAGTGAAAACAAAA 234
Query 231 CCAAAGAGGATTCTTCGATCTTCGATGCAAAGCTCCTAAATCAGCACTCAAACCACATAC 290
||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 235 CCAAAGAGGATTCTTCGATCTTCGATGCAAAGCTCCTTAATCAGCACTCGCACCACATAC 294
Query 291 CTCAACAATTCGTATGGCCTGACCACGAGAAACCTTCTACGGATGTTCAACCTCTCCAAG 350
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 295 CTCAACAGTTCGTATGGCCCGACCACGAGAAACCTTCTACGGATGTTCAACCTCTCCAAG 354
Query 351 TTCCTCTCATAGACCTATCCGGTTTCCTCTCCGGCGACTCGTTCTTGGTC-TCGGAGGCT 409
| || |||||||||||| |||||||||||||||||||||||| ||||| | |||||||||
Sbjct 355 TCCCACTCATAGACCTAGCCGGTTTCCTCTCCGGCGACTCGTGCTTGG-CATCGGAGGCT 413
Query 410 ACTAGACTCGTCTCGGAGGCTGCAACGAAACATGGCTTCTTCCTAGTCACTAACCATGGT 469
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 414 ACTAGACTCGTCTCAAAGGCTGCAACGAAACATGGCTTCTTCCTAATCACTAACCATGGT 473
Query 470 GTCGATGAGAGCCTCTTGTCCCGTGCCTATCTGCATATGGACTCTTTCTTTAAGGCCCCG 529
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 474 GTCGATGAGAGCCTCTTGTCTCGTGCCTATCTGCATATGGACTCTTTCTTTAAGGCCCCG 533
Query 530 GCTTGTGAGAAACAGAAGGCTCAGAGGAATTGGGGTGAGAGCTCCGGTTACGCTAGTAGC 589
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 534 GCTTGTGAGAAGCAGAAGGCTCAGAGGAAGTGGGGTGAGAGCTCCGGTTACGCTAGTAGT 593
Query 590 TTCGTCGGGAGATTCTCCTCGAAGCTCCCGTGGAAGGAAACGCTGTCGTTTAAGTTCTCT 649
|||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||
Sbjct 594 TTCGTCGGGAGATTCTCCTCAAAGCTCCCGTGGAAGGAGACTCTGTCGTTTAAGTTCTCT 653
Query 650 CCCGAGGAGAAGATACATACCGAAACCGTAAAAGAGTATGTTTCTAAGAAAATGGGAGAT 709
|||||||||||||| ||| || ||||||| ||||| | |||||||||||||||||| |||
Sbjct 654 CCCGAGGAGAAGATCCATTCCCAAACCGTTAAAGACTTTGTTTCTAAGAAAATGGGCGAT 713
Query 710 GGATACGAAGATTTCGGGAAGGTTTATCAAGAATACGCGGAGGCCATGAACACTCTCTCA 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GGATACGAAGATTTCGGGAAGGTTTATCAAGAATACGCGGAGGCCATGAACACTCTCTCA 773
Query 770 CTAAAGATCATGGAGCTCCTTGGAATGAGTCTTGGGCTCGAGAGGAGATATTTTAGAGAG 829
||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||
Sbjct 774 CTAAAGATCATGGAGCTTCTTGGAATGAGTCTTGGGGTCGAGAGGAGATATTTTAAAGAG 833
Query 830 TTTTTCGAAGAGAACGAGTCAATATTTCGGTTGAATTACTACCCGCAGTGCAAGCAACCG 889
||||||||||| | ||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 834 TTTTTCGAAGACAGCGATTCAATATTCCGGTTGAATTACTACCCGCAGTGCAAGCAACCG 893
Query 890 GAGCTTGCACTAGGGACAGGACCCCACTGCGACCCAACATCTCTAACCATACTTCATCAA 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 GAGCTTGCACTAGGGACAGGACCCCACTGCGACCCAACATCTCTAACCATACTTCATCAA 953
Query 950 GACCAAGTTGGTGGTCTTCAAGTTTTCGTGGACAACAAATGGCAATCAATTCCTCCTAAC 1009
||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 954 GACCAAGTTGGCGGTCTGCAAGTTTTCGTGGACAACAAATGGCAATCCATTCCTCCTAAC 1013
Query 1010 CCTCACTCTTTCGTGGTGAATATAGGCGACACCTTCATGGCTCTAACGAATGGAAGATAC 1069
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CCTCACGCTTTCGTGGTGAACATAGGCGACACCTTCATGGCTCTAACGAATGGAAGATAC 1073
Query 1070 AAGAGTTGTTTGCATCGGGCGGTAGTGAACAGCGAGAGAGAAAGGAAGACATTTGCATTC 1129
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1074 AAGAGTTGTTTGCATCGGGCGGTGGTGAACAGCGAGAGAGAAAGGAAGACGTTTGCATTC 1133
Query 1130 TTCCTATGTCCGAAAGGAGACAAAGTGGTGAAGCCACCCGAAGAACTAGTAGGA-GGAGT 1188
||||||||||||||||| || ||||||||||||||||| |||||||||||| | |||||
Sbjct 1134 TTCCTATGTCCGAAAGGGGAAAAAGTGGTGAAGCCACCAGAAGAACTAGTAA-ACGGAGT 1192
Query 1189 GATGTCTGGTCAAAGAGAGTATCCTGATTTTACATGGTCTATGTTTCTTGAGTTCACACA 1248
|| ||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1193 GAAGTCTGGTGAAAGAAAGTATCCTGATTTTACGTGGTCTATGTTTCTTGAGTTCACACA 1252
Query 1249 GAAGCATTATAGGGCAGACATGAACACTCTTGAAGAGTTCTCAATTTGGCTTAAGAACAG 1308
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1253 GAAGCATTATAGGGCAGACATGAACACTCTTGACGAGTTCTCAATTTGGCTTAAGAACAG 1312
Query 1309 AAGAAGTTTCTAAAATTGAGGAGACAATGTTGTGGTCCAG 1348
||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 AAGAAGTTTCTAAAATTGAGGAGACAATGTTGTGGTCCAG 1352
> AT1G60980.1 | Symbols: ATGA20OX4, GA20OX4 | gibberellin 20-oxidase
4 | chr1:22452573-22454140 FORWARD LENGTH=1131
Length=1131
Score = 856 bits (463), Expect = 0.0
Identities = 939/1162 (81%), Gaps = 60/1162 (5%)
Strand=Plus/Plus
Query 185 ATGGAATGCAT-AGCAACGGTCCCTCAAAGATTTAGTGAAAACAAGA-CCAAAGAGGATT 242
||||||||||| | || | ||||||||||||| | ||||||| | ||||| || |
Sbjct 1 ATGGAATGCATCA-TAAAGCTCCCTCAAAGATTCAACAAAAACAA-ATCCAAAAAGAACC 58
Query 243 C-TT--CGATCTTCGATGCAAAGCTCCTAAATCAGC-ACTCAAACCACATACCTCAACAA 298
| || |||||||||| ||| | | |||||||| | || || |||| ||||||||| |
Sbjct 59 CTTTGAGGATCTTCGATTCAACGGTTCTAAATCATCAAC-CAGACCATATACCTCAAGAG 117
Query 299 TTCGTATGGCCTGACCACGAGAAACCTTCTACGGATGTT-CAACCTCTCCAAGTTCCTCT 357
|| |||||||||||||| ||||||||||| | ||||| ||| | |||||||| ||| |
Sbjct 118 TTTGTATGGCCTGACCATGAGAAACCTTCCAAAAATGTTCCAATC-CTCCAAGTCCCTGT 176
Query 358 CATAGACCTATCCGGTTTCCTCTCCGGCGACTCGTTCTTGGTCTCGGAGGCT-ACTAGAC 416
||| ||||| | || ||||||||| |||| | || ||||||||||||||| | ||||
Sbjct 177 CATCGACCTCGCAGGCTTCCTCTCCAACGACCCATTATTGGTCTCGGAGGCTGA-AAGAC 235
Query 417 TCGTCTCGGAGGCTGCAACGAAACATGGCTTCTTCCTAGTCACTAACCATGGTGTCGATG 476
||||||| || || |||| ||||||||| |||||||||||||| ||||| || || || |
Sbjct 236 TCGTCTCTGAAGCAGCAAAGAAACATGGTTTCTTCCTAGTCACCAACCACGGAGTTGACG 295
Query 477 AGAGCCTCTTGTC-CCGTGCCTATCTGCATATGGACTCTTTCTTTAAGGCCCCGGCTTGT 535
|||| || ||||| | |||| || || ||||||| | ||||||||| | ||| || |
Sbjct 296 AGAGGCTTTTGTCTAC-TGCCCATAAGCTTATGGACACATTCTTTAAGTCACCGAATTAT 354
Query 536 GAGAAAC-AGAAGGCTCAGAGGAATTG-GGGTGAGAGCTCCGGTTACGCTAGTAGCTTCG 593
||||||| | |||||||||||||| | |||||| | | | || ||||||||||| || |
Sbjct 355 GAGAAACTA-AAGGCTCAGAGGAA-GGTGGGTGAAACCACAGGCTACGCTAGTAGTTTTG 412
Query 594 TCGGGAGATTCTCCTCGAAGCTCCCGTGGAAGGAAACGCTGTCGTTTAAGTTCTCTCCCG 653
| ||||||||| ||| || ||||||||||||||||| |||||| ||| || ||||
Sbjct 413 TAGGGAGATTCAAGGAGAATCTTCCGTGGAAGGAAACGCTATCGTTTTCGTTTTC-CCCG 471
Query 654 A-GGAGAAGA---TACA-TA--CCGAAACCG-TAAAAGAGTATGTTTCTAAGAAAATGGG 705
| |||||||| | | || || |||||| ||||| | || || ||||| ||||||
Sbjct 472 ACGGAGAAGAGCGAAAACTACTCCCAAACCGTTAAAA-ATTACATTAGTAAGACAATGGG 530
Query 706 AGATGGATACGAAGATTTCGGGAAG-GTTTATCAAGAATACGCGGAGGCCATGAACACTC 764
||| |||||| ||||||||||| || ||||||||||||||||||||| |||||| || ||
Sbjct 531 AGACGGATACAAAGATTTCGGG-AGTGTTTATCAAGAATACGCGGAGACCATGAGCAATC 589
Query 765 TCTCACTAAAGATCATGGAGCTCCTTGGAATGAGTCTTGGGCTCGAGA-GGAGATATTTT 823
|||| |||||||||||||| || ||||||||||||||||| || | | |||| |||||
Sbjct 590 TCTCTCTAAAGATCATGGAACTTCTTGGAATGAGTCTTGGTATCAAAAGGGAG-CATTTT 648
Query 824 AGAGAGTTTTTCGAAGAGAACGAGTCAATATTTCGGTTGAATTACTACCCGCAGTGCAAG 883
||||| ||||| ||||| || || || |||||| | || |||||||| || | ||||||
Sbjct 649 AGAGAATTTTTTGAAGACAATGAATCGATATTTAGATTAAATTACTATCCAAAATGCAAG 708
Query 884 CAACCGGAGCTTGCACTAGGGACAGGACCCCACTGCGACCCAACATCTCTAACCATACTT 943
||||| || |||| |||||| || || || |||||||||||||| |||||||| ||||||
Sbjct 709 CAACCAGATCTTGTACTAGGTACGGGGCCTCACTGCGACCCAACCTCTCTAACTATACTT 768
Query 944 CATCAAGACCAAGTTGGTGGTCTTCAAGTTTTCGTGGACAACAAATGGCAATCAATTCCT 1003
|| ||||| ||||| |||||||||||||||| ||||||||| | ||||||||||| |||
Sbjct 769 CAACAAGATCAAGTCAGTGGTCTTCAAGTTTTTGTGGACAACCAGTGGCAATCAATCCCT 828
Query 1004 CCTA-ACCCTCACTCTTTCGTGGTGAATATAGGCGACACCTTCATGGCTCTAACGAATGG 1062
|||| | ||||| | || |||||||| || |||||||| || |||||||||||||||||
Sbjct 829 CCTATA-CCTCAAGCATTGGTGGTGAACATTGGCGACACTTTAATGGCTCTAACGAATGG 887
Query 1063 AAGATACAAGAGTTGTTTGCATCGGGCGGTAGTGAACAGCGAGAGAGA-AAGGAAGACAT 1121
|| |||||||||||| |||||||||||||| |||||| |||||| || ||||||||||
Sbjct 888 AATATACAAGAGTTGCTTGCATCGGGCGGTGGTGAACGGCGAGA-CGACAAGGAAGACAC 946
Query 1122 TTGCATTCTTCCTATGTCCGAAAG-GAGACAAAGTGGTGAAGCCACCCGAAGAACTAGTA 1180
|||||||||||||||||||||||| | |||||||||||||||||| || | |||
Sbjct 947 TTGCATTCTTCCTATGTCCGAAAGTG-GACAAAGTGGTGAAGCCA-CC-----A--AGT- 996
Query 1181 GGAGGAGTGATGTCTGGTCAAAGAGAGTATCCTGATTTTACATGGTCTATGTTTCTTGAG 1240
|| | | | | ||| | |||| |||||| |||||||||||||||||||||||||||
Sbjct 997 -GA--A-TTA-G-AAGGTGAGAGAGCGTATCCCGATTTTACATGGTCTATGTTTCTTGAG 1050
Query 1241 TTCACACA-GAAGCATTATAGGGCAGACATGAACACTCTTGAAGAGTTCT-CAATTTGGC 1298
|||||| | |||||| ||||| ||||| |||||||||||||||||||| | ||| |||||
Sbjct 1051 TTCACA-ATGAAGCACTATAGAGCAGATATGAACACTCTTGAAGAGTT-TACAAATTGGC 1108
Query 1299 TTAAGAACAGAAG-AAGTTTCT 1319
| ||||||| ||| ||||||||
Sbjct 1109 TCAAGAACA-AAGGAAGTTTCT 1129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72790790250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5