BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487547
Length=735
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07225.1 | Symbols: | RING/U-box superfamily protein | chr5... 920 0.0
> AT5G07225.1 | Symbols: | RING/U-box superfamily protein | chr5:2268642-2270227
REVERSE LENGTH=705
Length=705
Score = 920 bits (498), Expect = 0.0
Identities = 655/727 (90%), Gaps = 26/727 (4%)
Strand=Plus/Plus
Query 1 ATGGGAGATTCCCAAAACTCTGGTGGATACAATTACTTCTTCGGAGAAGCTGATGAAATC 60
|||||||||||||||| ||| |||||||||||||||| |||||||| ||||||||||||
Sbjct 1 ATGGGAGATTCCCAAAGTTCTAGTGGATACAATTACTTTTTCGGAGAGGCTGATGAAATC 60
Query 61 ACAAGGAAAATCGAGGAATATCAAAGAGAACGTGGTAGAGTCGATGATTCTCCAGTGCAT 120
|| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 61 ACGAGGAAAATCGAGGAATATCAAAGAGAACGTGGTAGAGTCAATAATTCTCCAGTGCAT 120
Query 121 GTATTAGACAATTCTCCGATGATTAATTATCATCATCAAAACCAACCTACAATGTCTATC 180
|| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
Sbjct 121 GTGTTAGACAATTCTCCAATGATTACTTATCATCATCAAAACCAACCTACAATGTCTA-C 179
Query 181 -CATTATTATAATCCCAATTCATCGGAACATTATACTTCACAAGACATTTCTCGTTCTGG 239
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 ACATTATTATAATCCCAATTCATCGGAACATTATACTTCACAAGACATTTCTCGTTCTGG 239
Query 240 ATATCATCATCGTCAGTTTCAAAACCAGCCAAACACTCGCCATAGGCTATGCCTGAAATG 299
|||||||||| ||||||||||||| ||||||||||||||||||| |||| | |||||
Sbjct 240 TTATCATCATC---AGTTTCAAAACCAACCAAACACTCGCCATAGGCAATGCTTCAAATG 296
Query 300 TTTGATATCGTGGCTAATGTTGATGCTAAGGCGGTTGTTTGTACCAACACCAATCGTACC 359
|| ||||||||||||||||||||||| |||||||||||| |||||| | | || |
Sbjct 297 TTGGATATCGTGGCTAATGTTGATGCCAAGGCGGTTGTTCGTACCA-CG--A-TC--A-- 348
Query 360 AAGACCAATACCCACACCGATGCCTTATAACGATTCTCCACATTCATACTCAGGACTCTC 419
| ||||||||| |||||||||||||||||||||||||||| ||||||| |
Sbjct 349 A-------TACCCACACTTATGCCTTATAACGATTCTCCACATTCATTCTCAGGA-T--- 397
Query 420 ATATGAACGCTTTGAAGATCAACCAAACCAAGATTCACTCGATGAAATAATCGAGCGGAT 479
|| |||| ||| |||||| || |||||||| ||||||||||||||||||| ||||||||
Sbjct 398 AT--GAACACTTGGAAGATGAATCAAACCAACATTCACTCGATGAAATAATAGAGCGGAT 455
Query 480 ACAAGAGCGTGAAAGAGTAAACATAGGTGTAGGTGAAGGATTAACAGACAGACAAATTTC 539
| ||||||||||||||| ||||| | |||||||||||||||||||||| ||||||||||
Sbjct 456 AGAAGAGCGTGAAAGAGGAAACACAAGTGTAGGTGAAGGATTAACAGAGGGACAAATTTC 515
Query 540 TCAATTACCTACCATCAAGTTTAAACCCTCTCTAGAAGATAAAAAGTGTATGATATGCCA 599
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 516 TCAATTACCTACCATCAAGTTTAAACCTTCTCTAGAAGATAAAATGTGTATGATATGCCA 575
Query 600 GTCAGATTACGCTCGTGGAGATAAAATGACTATTTTACCATGTACTCACAAATACCACAA 659
|||||||| | ||| ||||||||| | || |||||||| ||||||||||||||||||||
Sbjct 576 TTCAGATTATGTTCGCGGAGATAAATTAACAATTTTACCCTGTACTCACAAATACCACAA 635
Query 660 AGATTGCATTAGTCATTGGCTCCAAAACAGCAAGCTTTGCTGCGTTTGCCAAAGAGAAGT 719
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 636 AGATTGCATTAGTCATTGGCTCCAAAACAGTAAGCTTTGCTGCGTTTGCCAAAGAGAAGT 695
Query 720 GATTGTA 726
|||||||
Sbjct 696 GATTGTA 702
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35666244370
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5