BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487547 Length=735 Score E Sequences producing significant alignments: (Bits) Value AT5G07225.1 | Symbols: | RING/U-box superfamily protein | chr5... 920 0.0 > AT5G07225.1 | Symbols: | RING/U-box superfamily protein | chr5:2268642-2270227 REVERSE LENGTH=705 Length=705 Score = 920 bits (498), Expect = 0.0 Identities = 655/727 (90%), Gaps = 26/727 (4%) Strand=Plus/Plus Query 1 ATGGGAGATTCCCAAAACTCTGGTGGATACAATTACTTCTTCGGAGAAGCTGATGAAATC 60 |||||||||||||||| ||| |||||||||||||||| |||||||| |||||||||||| Sbjct 1 ATGGGAGATTCCCAAAGTTCTAGTGGATACAATTACTTTTTCGGAGAGGCTGATGAAATC 60 Query 61 ACAAGGAAAATCGAGGAATATCAAAGAGAACGTGGTAGAGTCGATGATTCTCCAGTGCAT 120 || ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 61 ACGAGGAAAATCGAGGAATATCAAAGAGAACGTGGTAGAGTCAATAATTCTCCAGTGCAT 120 Query 121 GTATTAGACAATTCTCCGATGATTAATTATCATCATCAAAACCAACCTACAATGTCTATC 180 || |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| | Sbjct 121 GTGTTAGACAATTCTCCAATGATTACTTATCATCATCAAAACCAACCTACAATGTCTA-C 179 Query 181 -CATTATTATAATCCCAATTCATCGGAACATTATACTTCACAAGACATTTCTCGTTCTGG 239 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 ACATTATTATAATCCCAATTCATCGGAACATTATACTTCACAAGACATTTCTCGTTCTGG 239 Query 240 ATATCATCATCGTCAGTTTCAAAACCAGCCAAACACTCGCCATAGGCTATGCCTGAAATG 299 |||||||||| ||||||||||||| ||||||||||||||||||| |||| | ||||| Sbjct 240 TTATCATCATC---AGTTTCAAAACCAACCAAACACTCGCCATAGGCAATGCTTCAAATG 296 Query 300 TTTGATATCGTGGCTAATGTTGATGCTAAGGCGGTTGTTTGTACCAACACCAATCGTACC 359 || ||||||||||||||||||||||| |||||||||||| |||||| | | || | Sbjct 297 TTGGATATCGTGGCTAATGTTGATGCCAAGGCGGTTGTTCGTACCA-CG--A-TC--A-- 348 Query 360 AAGACCAATACCCACACCGATGCCTTATAACGATTCTCCACATTCATACTCAGGACTCTC 419 | ||||||||| |||||||||||||||||||||||||||| ||||||| | Sbjct 349 A-------TACCCACACTTATGCCTTATAACGATTCTCCACATTCATTCTCAGGA-T--- 397 Query 420 ATATGAACGCTTTGAAGATCAACCAAACCAAGATTCACTCGATGAAATAATCGAGCGGAT 479 || |||| ||| |||||| || |||||||| ||||||||||||||||||| |||||||| Sbjct 398 AT--GAACACTTGGAAGATGAATCAAACCAACATTCACTCGATGAAATAATAGAGCGGAT 455 Query 480 ACAAGAGCGTGAAAGAGTAAACATAGGTGTAGGTGAAGGATTAACAGACAGACAAATTTC 539 | ||||||||||||||| ||||| | |||||||||||||||||||||| |||||||||| Sbjct 456 AGAAGAGCGTGAAAGAGGAAACACAAGTGTAGGTGAAGGATTAACAGAGGGACAAATTTC 515 Query 540 TCAATTACCTACCATCAAGTTTAAACCCTCTCTAGAAGATAAAAAGTGTATGATATGCCA 599 ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| Sbjct 516 TCAATTACCTACCATCAAGTTTAAACCTTCTCTAGAAGATAAAATGTGTATGATATGCCA 575 Query 600 GTCAGATTACGCTCGTGGAGATAAAATGACTATTTTACCATGTACTCACAAATACCACAA 659 |||||||| | ||| ||||||||| | || |||||||| |||||||||||||||||||| Sbjct 576 TTCAGATTATGTTCGCGGAGATAAATTAACAATTTTACCCTGTACTCACAAATACCACAA 635 Query 660 AGATTGCATTAGTCATTGGCTCCAAAACAGCAAGCTTTGCTGCGTTTGCCAAAGAGAAGT 719 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 636 AGATTGCATTAGTCATTGGCTCCAAAACAGTAAGCTTTGCTGCGTTTGCCAAAGAGAAGT 695 Query 720 GATTGTA 726 ||||||| Sbjct 696 GATTGTA 702 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 35666244370 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5