BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487548
Length=486
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07230.1 | Symbols: | Bifunctional inhibitor/lipid-transfer... 641 0.0
> AT5G07230.1 | Symbols: | Bifunctional inhibitor/lipid-transfer
protein/seed storage 2S albumin superfamily protein | chr5:2270965-2271610
FORWARD LENGTH=526
Length=526
Score = 641 bits (347), Expect = 0.0
Identities = 444/489 (91%), Gaps = 13/489 (3%)
Strand=Plus/Plus
Query 1 ACAAACAATATACTATCTAATTATAATGGTATCTCTCAATTCCCTTGCAGCTATTCTCGT 60
|||||||||||| |||||||||| |||||||||||| || |||||||| |||||||||||
Sbjct 24 ACAAACAATATAGTATCTAATTAGAATGGTATCTCTAAAGTCCCTTGCTGCTATTCTCGT 83
Query 61 GGTCATGTTT-TTGGCCACCGGACCTATGGTTCGAGCCCAACACTGCAGAGACGAACTGA 119
| ||||||| || ||||||||||||| ||||| |||||| || ||||||||||||||||
Sbjct 84 TGCCATGTTTCTT-GCCACCGGACCTACGGTTCTAGCCCAGCAGTGCAGAGACGAACTGA 142
Query 120 GCAATGTGCAGGTGTGTGCGCCGCTTCTTCTGCCCGGTGCGGTCAATCCAGCTC-CGAAC 178
|||||||||||||||| |||||||| ||||||||||||||||||||||| || | |||||
Sbjct 143 GCAATGTGCAGGTGTGCGCGCCGCTGCTTCTGCCCGGTGCGGTCAATCCTGC-CGCGAAC 201
Query 179 TCAAATTGCTGCGCTGCCCTCCAATCAACTAACAAAGATTGTCTATGTAACGCTCTTCGA 238
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 202 TCAAATTGCTGCGCTGCCCTCCAAGCAACTAACAAAGATTGTCTATGTAACGCTCTTCGA 261
Query 239 GCAGCCACCACACTTACCTCTCTTTGTAACCTCCCCTCTTTTGATTGTGGTATAAGTGCT 298
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 262 GCAGCCACCACACTTACCTCTCTTTGTAACCTCCCCTCTTTTGATTGTGGCATAAGTGCC 321
Query 299 TAGTTCAGCAACGTTCAGTTCCAAGGATTTGGGGAGTTTGGTCTACAAAAGACAATAA-A 357
||||| | |||| ||||||||| ||||||||||||||||||||| |||| ||||| | |
Sbjct 322 TAGTTGAACAACATTCAGTTCCGAGGATTTGGGGAGTTTGGTCTGCAAACGACAAGACGA 381
Query 358 ATAAAATAATCCCAATTAGAAATACACTATTTCTTTGCTGTTTTGTTTTGAATTTGGTTT 417
||||||||| ||| ||||||||||||||| | ||||||||||||||||||||||
Sbjct 382 ATAAAATAAAAT-AATGAGAAATACACTATTTA---G-TGTTTTGTTTTGAATTTGGTTT 436
Query 418 GTTCAATACTTATGACAGATCTATTGATCAATACCGTTATCACCATTATTACGGAATATT 477
||||||||||||||||||||||||||| | || |||| |||||||||||||||||||||
Sbjct 437 GTTCAATACTTATGACAGATCTATTGA--A-TATCGTTTTCACCATTATTACGGAATATT 493
Query 478 TTCTATAAT 486
|||||||||
Sbjct 494 TTCTATAAT 502
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23157941767
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5