BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487551
Length=1232
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07250.1 | Symbols: ATRBL3, RBL3 | RHOMBOID-like protein 3 |... 1875 0.0
> AT5G07250.1 | Symbols: ATRBL3, RBL3 | RHOMBOID-like protein 3
| chr5:2274260-2275990 REVERSE LENGTH=1273
Length=1273
Score = 1875 bits (1015), Expect = 0.0
Identities = 1164/1237 (94%), Gaps = 5/1237 (0%)
Strand=Plus/Plus
Query 1 ACAGAGGAGAGAGAGATCACTATGGCTGTCGGAGATGATGATCTGGAGAACCGAATGTCA 60
|||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 35 ACAGAGAAGAGAGAGATCACTATGGCTGTCGGAGATGATGATCTGGAGAACAGAATGTCG 94
Query 61 GCGAAGGATCGAGGGATCGGTAGCAGAGGCGGTGATCGGAATCGAATCGGACCGCCTCCT 120
||||| |||||||| ||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 95 GCGAAAGATCGAGGAATCGGAAGCAGAGGCGGTGATCGGAATCGAATCGGACCACCGCCT 154
Query 121 TTGCCGGTAGCGTTGTCGTCGTCTACTGAATTTGGCGATAACGCGTTGTCGTCGCGGTGG 180
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 CTGCCGGTAGCCTTGTCGTCGTCTACTGAATTTGGCGATAACGCGTTGTCGTCGCGGTGG 214
Query 181 ACGTCGTGGCTTTTTCCGATGTTCGTTGTGGCTAACGTTGCGATTTTCGTCGTGGCGATG 240
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 215 ACGTCGTGGCTTGTTCCGATGTTCGTTGTGGCTAACGTTGCGGTTTTCGTCGTGGCGATG 274
Query 241 TTCGTCAACAACTGTCCGAAGCATTTCGAGTCTCACCGTCTTAGAGGTAACTGTGTCGCC 300
||||| || ||||||||||| |||||||||||||||||||| |||||| |||||||||||
Sbjct 275 TTCGTTAATAACTGTCCGAATCATTTCGAGTCTCACCGTCTCAGAGGTCACTGTGTCGCC 334
Query 301 AGGTTTCTCGGTAGACTCTCGTTTGAGCCTCTCCGAACTAATCCTCTCTTTGGTCCGTCT 360
| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 335 AAGTTTCTCGGTAGACTCTCCTTTGAGCCTCTCCGAACTAATCCTCTCTTTGGTCCATCT 394
Query 361 TCTCACACTTTGGAGAAGTTAGGAGCACTTGAGTGGAGCAAAGTTGTGGAGAAGAAGGAA 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 395 TCTCACACATTGGAGAAGTTAGGAGCACTTGAGTGGAGCAAAGTTGTGGAGAAGAAGGAA 454
Query 421 GGTTGGCGTCTCTTGACATGTATATGGTTGCACGCCGGTGTTATTCATCTCGGAGCCAAT 480
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 455 GGTTGGCGTCTCTTGACATGTATATGGTTACACGCGGGTGTTATTCATCTCGGAGCCAAT 514
Query 481 ATGCTAAGCCTCATATTCATCGGTATTCGCCTCGAGCAGCAATTTGGTTTTGTTAGAATA 540
||| ||||||| | ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 515 ATGTTAAGCCTTGTTTTCATTGGTATTCGTCTCGAGCAGCAATTTGGTTTTGTTAGAATC 574
Query 541 GGAGTTATATACCTATTTTCGGGAATTGGAGGGAGTGTACTGTCGTCGTTGTTTATCAGA 600
||||||||||||||||| || |||||||||||||||||| ||||||||||||||||||||
Sbjct 575 GGAGTTATATACCTATTATCAGGAATTGGAGGGAGTGTATTGTCGTCGTTGTTTATCAGA 634
Query 601 AACAGTATCTCGGTTGGAGCTTCTGGTGCTCTTTTTGGCCTCCTTGGCTCAATGCTTTCT 660
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 635 AACAGTATCTCTGTTGGAGCTTCTGGTGCTCTTTTTGGCCTCCTTGGCTCAATGCTCTCT 694
Query 661 GAACTTTTCACTAACTGGACAATCTACTCTAACAAGATTGCAGCACTCCTGACCCTTTTG 720
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 695 GAACTTTTCACCAACTGGACAATCTACTCTAACAAGATTGCTGCACTCCTGACGCTTTTG 754
Query 721 TTTGTCATCTTGATAAACCTGGCTATCGGGATTCTGCCTCACGTTGATAATTTTGCTCAT 780
|||||||||||||||||| |||| || |||||||||||||||||||||||||||||||||
Sbjct 755 TTTGTCATCTTGATAAACTTGGCAATTGGGATTCTGCCTCACGTTGATAATTTTGCTCAT 814
Query 781 GTGGGTGGATTTGTAACGGGTTTTCTCCTCGGTTTCATTCTCCTGGCTCGTCCCCAGTTC 840
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 815 GTGGGTGGATTTGTAACGGGGTTTCTCCTCGGTTTCATTCTGTTGGCTCGTCCCCAGTTT 874
Query 841 AAGTGGTTAGCAAGAGTGCACATGCCACAAGGGACACCTCTGAGATACAAGTACAAGCCT 900
|||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| ||
Sbjct 875 AAGTGGTTAGCAAGAGAGCATATGCCACAAGGCACACCTCTGAGATACAAGTACAAGACT 934
Query 901 TACCAATACCTATTGTGGCTCTTATCTCTGGTTCTATTGATTGCCGGATTCGTGGTGGCG 960
||||||||||||||||||||| ||||| ||||||||||||||||||| || |||||||||
Sbjct 935 TACCAATACCTATTGTGGCTCCTATCTTTGGTTCTATTGATTGCCGGGTTTGTGGTGGCG 994
Query 961 TTGTTGATGCTATTTCGAGGAGAAAACGGCAATGATCACTGCCGCTGGTGTCGCTACCTG 1020
||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 995 CTGTTGATGCTATTTCGAGGAGAAAACGGCAATGATCACTGCCGTTGGTGTCACTACCTG 1054
Query 1021 CGCTGTGTACCCACCTCAAGTTGGAGGTGTGATGATATCTGATAAGTAAAGCAACATGTT 1080
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1055 CGCTGTGTTCCCACCTCAAGTTGGAGGTGTGATGATGTCTGATAAGTAAAGCAACAAGTT 1114
Query 1081 TTACTTTGTAAATGCATATATAGGTT-TATC-AT-GTC--ATTTTATAGTGTTTCAGTGT 1135
||||||||||||| ||| |||||||| ||| || || ||||| ||||||||||||||
Sbjct 1115 TTACTTTGTAAATCCATCTATAGGTTATATTTATCGTGTTATTTTTTAGTGTTTCAGTGT 1174
Query 1136 AATTGTGTGATTGCTTATGTGTGCGACTCTTATTGAGCTTTTTTACCGGAAAGAAAAAGA 1195
||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||
Sbjct 1175 AATTGTGTGATTGCTTATGTGTGTGACTCTTATTGGGCTTTTATACCGGAAAGAAAAAGA 1234
Query 1196 GGAAGATATTAGTTTAATATGAAAGGTTATATCAATC 1232
||||||||||||||||||||||||||||||||||||
Sbjct 1235 AGAAGATATTAGTTTAATATGAAAGGTTATATCAATC 1271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60541857270
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5