BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487551 Length=1232 Score E Sequences producing significant alignments: (Bits) Value AT5G07250.1 | Symbols: ATRBL3, RBL3 | RHOMBOID-like protein 3 |... 1875 0.0 > AT5G07250.1 | Symbols: ATRBL3, RBL3 | RHOMBOID-like protein 3 | chr5:2274260-2275990 REVERSE LENGTH=1273 Length=1273 Score = 1875 bits (1015), Expect = 0.0 Identities = 1164/1237 (94%), Gaps = 5/1237 (0%) Strand=Plus/Plus Query 1 ACAGAGGAGAGAGAGATCACTATGGCTGTCGGAGATGATGATCTGGAGAACCGAATGTCA 60 |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 35 ACAGAGAAGAGAGAGATCACTATGGCTGTCGGAGATGATGATCTGGAGAACAGAATGTCG 94 Query 61 GCGAAGGATCGAGGGATCGGTAGCAGAGGCGGTGATCGGAATCGAATCGGACCGCCTCCT 120 ||||| |||||||| ||||| |||||||||||||||||||||||||||||||| || ||| Sbjct 95 GCGAAAGATCGAGGAATCGGAAGCAGAGGCGGTGATCGGAATCGAATCGGACCACCGCCT 154 Query 121 TTGCCGGTAGCGTTGTCGTCGTCTACTGAATTTGGCGATAACGCGTTGTCGTCGCGGTGG 180 |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 155 CTGCCGGTAGCCTTGTCGTCGTCTACTGAATTTGGCGATAACGCGTTGTCGTCGCGGTGG 214 Query 181 ACGTCGTGGCTTTTTCCGATGTTCGTTGTGGCTAACGTTGCGATTTTCGTCGTGGCGATG 240 |||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 215 ACGTCGTGGCTTGTTCCGATGTTCGTTGTGGCTAACGTTGCGGTTTTCGTCGTGGCGATG 274 Query 241 TTCGTCAACAACTGTCCGAAGCATTTCGAGTCTCACCGTCTTAGAGGTAACTGTGTCGCC 300 ||||| || ||||||||||| |||||||||||||||||||| |||||| ||||||||||| Sbjct 275 TTCGTTAATAACTGTCCGAATCATTTCGAGTCTCACCGTCTCAGAGGTCACTGTGTCGCC 334 Query 301 AGGTTTCTCGGTAGACTCTCGTTTGAGCCTCTCCGAACTAATCCTCTCTTTGGTCCGTCT 360 | |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| Sbjct 335 AAGTTTCTCGGTAGACTCTCCTTTGAGCCTCTCCGAACTAATCCTCTCTTTGGTCCATCT 394 Query 361 TCTCACACTTTGGAGAAGTTAGGAGCACTTGAGTGGAGCAAAGTTGTGGAGAAGAAGGAA 420 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 395 TCTCACACATTGGAGAAGTTAGGAGCACTTGAGTGGAGCAAAGTTGTGGAGAAGAAGGAA 454 Query 421 GGTTGGCGTCTCTTGACATGTATATGGTTGCACGCCGGTGTTATTCATCTCGGAGCCAAT 480 ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 455 GGTTGGCGTCTCTTGACATGTATATGGTTACACGCGGGTGTTATTCATCTCGGAGCCAAT 514 Query 481 ATGCTAAGCCTCATATTCATCGGTATTCGCCTCGAGCAGCAATTTGGTTTTGTTAGAATA 540 ||| ||||||| | ||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 515 ATGTTAAGCCTTGTTTTCATTGGTATTCGTCTCGAGCAGCAATTTGGTTTTGTTAGAATC 574 Query 541 GGAGTTATATACCTATTTTCGGGAATTGGAGGGAGTGTACTGTCGTCGTTGTTTATCAGA 600 ||||||||||||||||| || |||||||||||||||||| |||||||||||||||||||| Sbjct 575 GGAGTTATATACCTATTATCAGGAATTGGAGGGAGTGTATTGTCGTCGTTGTTTATCAGA 634 Query 601 AACAGTATCTCGGTTGGAGCTTCTGGTGCTCTTTTTGGCCTCCTTGGCTCAATGCTTTCT 660 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 635 AACAGTATCTCTGTTGGAGCTTCTGGTGCTCTTTTTGGCCTCCTTGGCTCAATGCTCTCT 694 Query 661 GAACTTTTCACTAACTGGACAATCTACTCTAACAAGATTGCAGCACTCCTGACCCTTTTG 720 ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 695 GAACTTTTCACCAACTGGACAATCTACTCTAACAAGATTGCTGCACTCCTGACGCTTTTG 754 Query 721 TTTGTCATCTTGATAAACCTGGCTATCGGGATTCTGCCTCACGTTGATAATTTTGCTCAT 780 |||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||| Sbjct 755 TTTGTCATCTTGATAAACTTGGCAATTGGGATTCTGCCTCACGTTGATAATTTTGCTCAT 814 Query 781 GTGGGTGGATTTGTAACGGGTTTTCTCCTCGGTTTCATTCTCCTGGCTCGTCCCCAGTTC 840 |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 815 GTGGGTGGATTTGTAACGGGGTTTCTCCTCGGTTTCATTCTGTTGGCTCGTCCCCAGTTT 874 Query 841 AAGTGGTTAGCAAGAGTGCACATGCCACAAGGGACACCTCTGAGATACAAGTACAAGCCT 900 |||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| || Sbjct 875 AAGTGGTTAGCAAGAGAGCATATGCCACAAGGCACACCTCTGAGATACAAGTACAAGACT 934 Query 901 TACCAATACCTATTGTGGCTCTTATCTCTGGTTCTATTGATTGCCGGATTCGTGGTGGCG 960 ||||||||||||||||||||| ||||| ||||||||||||||||||| || ||||||||| Sbjct 935 TACCAATACCTATTGTGGCTCCTATCTTTGGTTCTATTGATTGCCGGGTTTGTGGTGGCG 994 Query 961 TTGTTGATGCTATTTCGAGGAGAAAACGGCAATGATCACTGCCGCTGGTGTCGCTACCTG 1020 ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 995 CTGTTGATGCTATTTCGAGGAGAAAACGGCAATGATCACTGCCGTTGGTGTCACTACCTG 1054 Query 1021 CGCTGTGTACCCACCTCAAGTTGGAGGTGTGATGATATCTGATAAGTAAAGCAACATGTT 1080 |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||| Sbjct 1055 CGCTGTGTTCCCACCTCAAGTTGGAGGTGTGATGATGTCTGATAAGTAAAGCAACAAGTT 1114 Query 1081 TTACTTTGTAAATGCATATATAGGTT-TATC-AT-GTC--ATTTTATAGTGTTTCAGTGT 1135 ||||||||||||| ||| |||||||| ||| || || ||||| |||||||||||||| Sbjct 1115 TTACTTTGTAAATCCATCTATAGGTTATATTTATCGTGTTATTTTTTAGTGTTTCAGTGT 1174 Query 1136 AATTGTGTGATTGCTTATGTGTGCGACTCTTATTGAGCTTTTTTACCGGAAAGAAAAAGA 1195 ||||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||| Sbjct 1175 AATTGTGTGATTGCTTATGTGTGTGACTCTTATTGGGCTTTTATACCGGAAAGAAAAAGA 1234 Query 1196 GGAAGATATTAGTTTAATATGAAAGGTTATATCAATC 1232 |||||||||||||||||||||||||||||||||||| Sbjct 1235 AGAAGATATTAGTTTAATATGAAAGGTTATATCAATC 1271 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60541857270 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5