BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487556
Length=789
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07310.1 | Symbols: | Integrase-type DNA-binding superfamil... 1214 0.0
> AT5G07310.1 | Symbols: | Integrase-type DNA-binding superfamily
protein | chr5:2305684-2306660 FORWARD LENGTH=792
Length=792
Score = 1214 bits (657), Expect = 0.0
Identities = 750/794 (94%), Gaps = 9/794 (1%)
Strand=Plus/Plus
Query 2 TGGCGAATTCAAGAAATTATGGAAAGAGGCCCTTCCGA-GCGGACGAATCGGATGAAAAG 60
||||||||||| |||||||||||||||||||||| ||| || || |||||||||||||||
Sbjct 2 TGGCGAATTCAGGAAATTATGGAAAGAGGCCCTTTCGAGGC-GATGAATCGGATGAAAAG 60
Query 61 AAAGAAGGCGATGATGATGAGAACATATTCCCTTTCTTCTCGGCCCGATCCCAATATGAC 120
||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 AAAGAAGCCGATGATGATGAGAACATATTCCCTTTCTTCTCTGCCCGATCCCAATATGAC 120
Query 121 ACGCGTGCCATGGTCTCAGCCTTGACTCAAGTCATTGGTAACCAAAGCAGCTCCCATGAT 180
| |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 121 ATGCGTGCCATGGTCTCAGCCTTGACTCAAGTCATTGGAAACCAAAGCAGCTCTCATGAT 180
Query 181 AAT-ACTCAACATCAACCTGTTGTGTATAATCAACAAAATCCCAACCAACCGGCTCCTCC 239
||| || |||||||||||||||||||||||||||||| |||| |||| ||||||||||||
Sbjct 181 AATAAC-CAACATCAACCTGTTGTGTATAATCAACAAGATCCTAACCCACCGGCTCCTCC 239
Query 240 GACTCAAGATCAAGGGCTCGTGAGGAAGAGGCACTATAGAGGGGTAAGACAACGACCATG 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AACTCAAGATCAAGGGCTATTGAGGAAGAGGCACTATAGAGGGGTAAGACAACGACCATG 299
Query 300 GGGAAAGTGGGCAGCTGAAATTCGTGATCCGCAAAAGGCAGCACGGGTGTGGCTCGGGAC 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 300 GGGAAAGTGGGCAGCTGAAATTCGGGATCCGCAAAAGGCAGCACGGGTGTGGCTCGGGAC 359
Query 360 ATTTGAGACTGCTGAAGCTGCGGCTTTAGCTTATGATGAA-GCAGCTCTTAAGTTCAAAG 418
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 360 ATTTGAGACTGCTGAAGCTGCGGCTTTAGCTTATGAT-AACGCAGCTCTTAAGTTCAAAG 418
Query 419 GAAGCAAAGCCAAACTCAATTTCCCTGAGAGAGCTCAACTAGCAAGTAACACTAGTACTA 478
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 419 GAAGCAAAGCCAAACTCAATTTCCCTGAGAGAGCTCAACTAGCAAGTAACACTAGTACAA 478
Query 479 TTACTGGTCCACCAAACTATTACTCTTCTAATAATCAAATTTACTACTCAAATCCGCAGA 538
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 479 CTACCGGTCCACCAAACTATTATTCTTCTAATAATCAAATTTACTACTCAAATCCGCAGA 538
Query 539 CTAATCCGCAAACCATACCATATTATAACCAATACTACTACAACCAATATCTTCTTCAAG 598
||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| |||||
Sbjct 539 CTAATCCGCAAACCATACCTTATTTTAACCAATACTACTATAACCAATATCTTCATCAAG 598
Query 599 GAGGAAATAGTAACGATGCAGTCAGCTATAGCTTGGCCGGTGGGGAAACCGGAGGGTCAA 658
| || ||||||||||||||| | || ||||||||||||||||| ||||||||||| ||||
Sbjct 599 GGGGGAATAGTAACGATGCATTAAGTTATAGCTTGGCCGGTGGAGAAACCGGAGGCTCAA 658
Query 659 TGTATAATCATCAGACGTTATCTAGTACAACTTCTTCATCTACTGTTGGATCTTCAAGGC 718
|||||||||||||||||||||||| ||||| |||||||||| ||| ||||||||||||||
Sbjct 659 TGTATAATCATCAGACGTTATCTACTACAAATTCTTCATCTTCTGGTGGATCTTCAAGGC 718
Query 719 AACAAGATGA--A-CAAGATTACGCTAGATATTTGCGTTTTGGGGATTCTTCACCTCCTA 775
|||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 719 AACAAGATGATGAACAAGATTACGCCAGATATTTGCGTTTTGGGGATTCTTCACCTCCTA 778
Query 776 ATTCTGGTTTTTGA 789
||||||||||||||
Sbjct 779 ATTCTGGTTTTTGA 792
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38378888308
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5