BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487562
Length=1090
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07370.2 | Symbols: IPK2a, ATIPK2A | inositol polyphosphate ... 1646 0.0
> AT5G07370.2 | Symbols: IPK2a, ATIPK2A | inositol polyphosphate
kinase 2 alpha | chr5:2330385-2332281 FORWARD LENGTH=1168
Length=1168
Score = 1646 bits (891), Expect = 0.0
Identities = 1028/1093 (94%), Gaps = 13/1093 (1%)
Strand=Plus/Plus
Query 1 TGTGAAGAATCGGACACC-TTCTTATCGTCTTCTCCATCGTTTCTCCCTGAAGATTTGTT 59
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 38 TGTGAAGAATCGTACACCTTTCTTATCGTCTTCTCCATCGTTTCTCCCTGAAGATTTGTT 97
Query 60 CTACTAATCTTTTTGGGTTCAGTTTCATAATTTATACAAGATGCAGCTCAAGGCCCCTGA 119
|||||| ||||||||||||||||||||||||||| |||||||||||||||| | ||||||
Sbjct 98 CTACTACTCTTTTTGGGTTCAGTTTCATAATTTAAACAAGATGCAGCTCAAAGTCCCTGA 157
Query 120 ACATCAGGTTGCAGGACACATTGCTAAAGACGGTAAGCCTGGTCCCCTCGTGGATGACAA 179
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 158 ACATCAGGTTGCAGGACACATTGCTAAAGACGGGAAGCCTGGTCCTCTCGTAGATGACAA 217
Query 180 GGGTCGGTTCTTCAAGCCACTTCAGGGTGATTCTCGTGGTGAAAACGAGGTAAAGTTCTA 239
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 218 GGGTCGGTTCTTCAAGCCACTTCAGGGCGATTCTCGTGGTGAAATCGAGGTAAAGTTCTA 277
Query 240 CGAATCTTTCTCATCAAACACCGAGGTTCCAGAACACATCCGTAGATATTTCCCGGTGTA 299
|||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 278 CGAATCTTTCTCCTCAAACACAGAGGTTCCAGAACACATCCATAGATATTTCCCGGTGTA 337
Query 300 TCACGGCACACAGGCAGTTGAAGGTTCTGATGGAGCAGCCATGATTGTGCTGGAAAATCT 359
||||||||| || |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 338 TCACGGCACTCAAGCAGTTGAAGGTTCTGATGGAGCAGCCATGATGGTGTTGGAAAATCT 397
Query 360 TCTTGCAGATTACTCAAAACCATCAGTAATGGATGTTAAGATGGGTACAAGGACATGGTA 419
||||||||| ||| |||||||||||||||||||||||||||||||| | || ||||||||
Sbjct 398 TCTTGCAGAATACACAAAACCATCAGTAATGGATGTTAAGATGGGTTCGAGAACATGGTA 457
Query 420 TCCTGAAGCTTCTGAAGAATACATCCAAAAATGTTTAAAGAAAGACACGGGTACCACAAC 479
|||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 458 TCCTGATGCATCTGAAGAATACATCCAAAAATGTTTGAAGAAAGACACGGGTACCACAAC 517
Query 480 CGTGTCAGCGGGTTTCAGGATCTCTGGTTTTGAAGTGTTTGATCACAAAGAATTGAGTTT 539
||||||| |||||||||||||||||||||| ||||||| |||||||||||||| ||||||
Sbjct 518 CGTGTCATCGGGTTTCAGGATCTCTGGTTTCGAAGTGTATGATCACAAAGAATCGAGTTT 577
Query 540 CTGGAAGCCCGAGAGGAAGCTTCTTCGTGGGCTCAATGTGGATGGAGCCAGATTGACTCT 599
||||||||||||||||||||||||||| |||||| |||| |||||||| |||||||||||
Sbjct 578 CTGGAAGCCCGAGAGGAAGCTTCTTCGCGGGCTCGATGTAGATGGAGCGAGATTGACTCT 637
Query 600 GAGGAAGTTTGTATCATCTAACTCACTTTCGGACATC-GGCTCAAAACCTGACTCTGCTT 658
||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||
Sbjct 638 GAGGAAGTTTGTATCATCTAACTCACTTTCGGACA-CTGGCTCGAAACCTGACTCTGCTT 696
Query 659 TTGCCTCAAGTGTTTACGGCAGTTCCCACGGGATCTTAACACAGTTGCTGGAGCTCAAGA 718
||||||| |||||||||||| ||||||||||||||||||| ||||||||||| |||||||
Sbjct 697 TTGCCTCGAGTGTTTACGGCGGTTCCCACGGGATCTTAACGCAGTTGCTGGAACTCAAGA 756
Query 719 ACTGGTTCGAGAACCAAACGCTCTACCATTTCAACTCTTGTTCGATTCTAATGGTCTATG 778
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 757 CCTGGTTCGAGAACCAAACGCTCTACCATTTCAACTCTTGTTCGATTTTAATGGTCTATG 816
Query 779 AGAACGAATCCATCTTAAAGGGAAATGATGATGATGATGCTCGACCACAAGTCAAGCTGG 838
|||| ||||||||||||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 817 AGAATGAATCCATCTTAAAGGG-AA--ATGATGATGATGCTAGACCACAAGTCAAGCTGG 873
Query 839 TGGATTTTGCTCATGTTCTTGATGGTAATGGTGTCATTGACCATAACTTCTTGGGTGGTC 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 TGGATTTTGCTCATGTTCTTGATGGTAATGGTGTCATTGACCATAACTTCTTGGGTGGTC 933
Query 899 TCTGTTCTTTCATAAACTTCATTCGTGATATTCTTCAGAGCCCAAATGAGTCTGCAGAAT 958
| || ||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
Sbjct 934 TTTGCTCTTTCATAAACTTCATTCGTGAGATTCTTCAGAGCCCAGATGAGTCTGCAGATT 993
Query 959 CTTAGATT-AAGTTATTTTTGTTTGTTTGTTATGGCTTTGGCTGATTCCAATTTTTGGAT 1017
|||||||| |||||| ||| ||||||| |||||||||||||||||||||||||||||
Sbjct 994 CTTAGATTTAAGTTAATTT-GTTTGTT----ATGGCTTTGGCTGATTCCAATTTTTGGAT 1048
Query 1018 ACAAACTTATGTCTCCTTCATATATGTTACTTGATTACCTAAAGAGCATAATACATTCGT 1077
| |||||||||| ||||||| |||||| |||||||||||||||||||| |||||||||||
Sbjct 1049 ATAAACTTATGTTTCCTTCACATATGT-ACTTGATTACCTAAAGAGCAGAATACATTCGT 1107
Query 1078 ACTCTTTTCTCAA 1090
|||||||||||||
Sbjct 1108 ACTCTTTTCTCAA 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53413379880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5