BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487573
Length=1267
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07420.1 | Symbols: | Pectin lyase-like superfamily protein... 1997 0.0
AT5G07430.1 | Symbols: | Pectin lyase-like superfamily protein... 981 0.0
> AT5G07420.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:2349455-2351509 FORWARD LENGTH=1321
Length=1321
Score = 1997 bits (1081), Expect = 0.0
Identities = 1210/1271 (95%), Gaps = 14/1271 (1%)
Strand=Plus/Plus
Query 1 ttttcttttattttctttttattttaaaaaaaaaaaactaaaaaaataa-aaattaataa 59
||||||||||||||| ||||| ||| ||||||||||| ||||| ||| |||||||| |
Sbjct 35 TTTTCTTTTATTTTC-TTTTACTTT---AAAAAAAAACTTAAAAATTAATAAATTAAT-A 89
Query 60 aaGATGGGTTACATTTCTCT-GTCCCTAGTTGCATTACTTGTATTTTTTGCCTCGCCGGT 118
|||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 90 AAGATGGGTTACATATCTCTAG-CCCTAGTTGCATTACTTGTATTTTTTGCCTCGCCGGT 148
Query 119 GGTTCTCGCCGACGATATAACCCCAATTCCAGCAGACAGAGCCCTAATCTCGCAATGGTT 178
|||||||||||||||||||||||||||||| ||||||||||||| |||| | ||||||||
Sbjct 149 GGTTCTCGCCGACGATATAACCCCAATTCCGGCAGACAGAGCCCAAATCCCACAATGGTT 208
Query 179 CAAGGCCAATGTTAAACCCTTTTCCCAGAGACGGGGCACGCTAGACCCTGACCTCGAAGC 238
|| |||||| |||||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 209 CATGGCCAACGTTAAACCCTTTTCCCAGAGACGGGGCACGCTAGACCCCGAACTTGAAGC 268
Query 239 TGCTGAAGCATCGAGACGTGTTATCACCGTAAATCAAAATGGAGGCGGCGATTTTAAGAC 298
||| ||||||||| ||||||| |||| ||| |||||||||||||||||||||||||||||
Sbjct 269 TGCAGAAGCATCGCGACGTGTCATCATCGTGAATCAAAATGGAGGCGGCGATTTTAAGAC 328
Query 299 AATAAACGCAGCAATCAAGAGCATTCCATTAGCAAACAAGAACCGTGTGATCATCAAGTT 358
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 329 AATAAACGCGGCAATCAAGAGCATTCCATTAGCAAACAAGAACCGTGTGATCATAAAGTT 388
Query 359 GGCTCCTGGTATATACCATGAGAAAGTTACCATCGACATAGGCCGACCATTCGTTACATT 418
||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||||||
Sbjct 389 GGCTCCTGGTATATACCATGAGAAAGTTACCGTCGACGTAGGCCGACCATACGTTACATT 448
Query 419 GCTTGGCAAACCTGGTGCGGAAACCAACTTGACTTACGACGGAACGGCCGCTAAATACGG 478
|||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||
Sbjct 449 GCTTGGCAAACCTGGTGCGGAAACCAACTTGACTTATGCCGGAACAGCCGCTAAATACGG 508
Query 479 CACCGTAGAGAGTGCCACGCTTATCGTCTGGGCCACAAATTTTTTGGCAGCCAACCTAAA 538
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 CACCGTGGAGAGTGCCACGCTTATCGTCTGGGCCACAAATTTTTTGGCAGCCAACCTAAA 568
Query 539 CATTATAAACACTTCTCCGATGCCAAAACCAGGTACACAAGGACAAGCTCTAGCTATGAG 598
|||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||
Sbjct 569 CATTATAAACACTTCTCCAATGCCAAAGCCTGGTACACAAGGACAAGCTCTAGCTATGAG 628
Query 599 AATCAACGGCGATAAGGCTGCCTTCTACAACTGCAGATTCTATGGTTTTCAAGACACTCT 658
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 629 AATCAACGGCGATAAGGCTGCTTTCTACAACTGCAGATTCTATGGTTTTCAAGACACTCT 688
Query 659 TTGCGACGATAGAGGCAACCATTTCTTTAAGAATTGTTACATCGAAGGAACCTATGATTT 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 689 TTGCGACGATAGAGGCAACCATTTCTTTAAGAATTGTTACATCGAAGGAACCTATGATTT 748
Query 719 TATCTTTGGAAGAGGAGCTTCCTTGTACTTGACTACGCAATTGCACGCTGTTGGAGATGG 778
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 749 TATCTTTGGAAGAGGAGCTTCCTTGTACTTGACTACGCAATTGCATGCTGTTGGAGACGG 808
Query 779 ATTAAGAGTGATCGCAGCACACAATCGACAGAGTACAAAC-GAGCAAAACGGGTATTCGT 837
||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||
Sbjct 809 ATTAAGAGTGATCGCGGCACACAATCGACAGAGTACAA-CTGAGCAAAACGGGTATTCGT 867
Query 838 TCGTGCATTGCAAGGTTACTGGAGTCGGAACCGGGATCTACTTGGGTAGGGCTTGGATGA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 868 TCGTGCATTGCAAGGTTACTGGAGTCGGAACCGGGATCTACTTGGGTAGGGCTTGGATGA 927
Query 898 GCCACCCTAAGGTCGTCTATTCCTACACTGAAATGTCTAGTGTCGTCAACCCATCTGGAT 957
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 928 GCCACCCTAAGGTCGTCTACTCCTACACTGAAATGTCTAGTGTCGTCAACCCATCTGGAT 987
Query 958 GGCAAGAGAACAGAGTGCGCGCGCATGATAGGACGGTGTTCTATGGAGAATACATGTGCA 1017
||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||
Sbjct 988 GGCAAGAGAACAGAGTGCGTGCGCATGACAAGACGGTGTTCTATGGAGAATACATGTGCA 1047
Query 1018 CGGGACCAGGATCACACAAAGCGAAGAGAGTGGCACACACACAAGACATTGACAACAAAG 1077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1048 CGGGACCAGGATCACACAAAGCGAAGAGAGTGGCACACACACAAGACATTGACAACAAAG 1107
Query 1078 AAGCTAACCAATTCCTTACCCTCGGCTACATCAAAGGCTCCAAATGGCTTCTCCCTCCTC 1137
|||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1108 AAGCTAGCCAATTCCTTACCCTCGGCTACATCAAGGGCTCCAAATGGCTTCTACCTCCTC 1167
Query 1138 CCGCTTACTAAATCACACCCAATCATTACTAAAATTATGTATATTGGTACAATAGTACGT 1197
|||||||||||| || |||||||||| ||||||||| ||||||| | |||||| ||||||
Sbjct 1168 CCGCTTACTAAA-CAGACCCAATCATCACTAAAATTCTGTATAT-GTTACAATTGTACGT 1225
Query 1198 TTTGTTTTCGAAG-AGTCCTCTCTTCCTGTATATGATGGAGGAGTAGAGACTTGTGTAAT 1256
||||||||||||| | |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1226 TTTGTTTTCGAAGTA-TCCTCTCTTCCTGTATATAATGGAGGAGTAGAGACTTGTGTAAT 1284
Query 1257 TTTGGTTTCAT 1267
|||||||||||
Sbjct 1285 TTTGGTTTCAT 1295
> AT5G07430.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:2352439-2354202 FORWARD LENGTH=1329
Length=1329
Score = 981 bits (531), Expect = 0.0
Identities = 957/1159 (83%), Gaps = 44/1159 (4%)
Strand=Plus/Plus
Query 1 ttttcttttattttctttttatttt-aaaaaaaaaaaactaaaaaaataaaa-attaat- 57
||||| |||||||| ||||||||| || | ||| || || ||||||||| | |||
Sbjct 51 TTTTC-ATTATTTTC-TTTTATTTTGTAACAGAAATAA--AAGAAAATAAAAGA-AAATA 105
Query 58 aaaaGATGGGTTACATTTCTCTGTCCCTAGTTGCATTACTTGTAT-TTTTTGCCTCGCCG 116
||||||||||||||||||| ||||| | |||||||| ||||| | ||||||| ||||||
Sbjct 106 AAAAGATGGGTTACATTTCAATGTCCGTGGTTGCATTCCTTGT-TGTTTTTGCTTCGCCG 164
Query 117 GTGGTTCTCGCCGA-CGATATA-ACCCCAATTCCAGCAGACAGAGCCCTAATCTCGCAAT 174
|||||||| ||| | ||||| | | || ||||||| | ||||||||| |||| ||||||
Sbjct 165 GTGGTTCTAGCC-ACCGATACAGA-TCCGATTCCAGAAAACAGAGCCCAAATCCCGCAAT 222
Query 175 GGTTCAAGGCCAATGTTAAACCCTTTTCCCAGAGACGGGGCACGCTAGACCCTGACCTCG 234
|||| || | || |||||||| | |||||||||| ||||||||||||||| | |||||
Sbjct 223 GGTTTAAAACAAACGTTAAACCATATTCCCAGAGAAAGGGCACGCTAGACCCCGCCCTCG 282
Query 235 AAGCTGCTGAAGCATCGAGACGTGTTATCACCGTAAATCAAAATGGAGGCGGC-GATTTT 293
|||||||||||||| || ||| |||||||||| |||||||| || ||| || ||||
Sbjct 283 AAGCTGCTGAAGCAGCGCGACAAATTATCACCGTGAATCAAAAAGGTGGC-GCTAATTTC 341
Query 294 AAGACAATAAACGCAGCAATCAAGAGCATTCC-ATTAGCAAACAAGAACCGTGTGATCAT 352
|||||| |||||| ||| |||||||||||||| | || |||||||||||||||||||||
Sbjct 342 AAGACATTAAACGAAGCTATCAAGAGCATTCCGA-CAGGAAACAAGAACCGTGTGATCAT 400
Query 353 CAAGTTGGCTCCTGGTATATACCATGAGAAAGTTACCATCGACATAGGC-CGACCATTCG 411
|||||||||||||||| ||||| ||||||| || || ||||||||| || |||||||||
Sbjct 401 CAAGTTGGCTCCTGGTGTATACAATGAGAAGGTCACAATCGACATA-GCTCGACCATTCA 459
Query 412 TTACATTGCTTGG-CAAACCTGGTGCGGAAACCAACTTGACTTACGACGGAACGGCCGCT 470
||||||||||||| | |||||||||||||||| |||||||||| |||| || ||||||
Sbjct 460 TTACATTGCTTGGTC-AACCTGGTGCGGAAACGGTCTTGACTTACCACGGGACAGCCGCT 518
Query 471 AAATACGGCACCGTAGAGAGTGCCACGCTTATCGTCTGGGCCACAA-ATTTTTTGGCAGC 529
| ||||| ||||| |||||||| || ||||||||||||| | || |||| ||||||
Sbjct 519 CAGTACGGAACCGTTGAGAGTGCAACTCTTATCGTCTGGG-CTGAATATTTCCAGGCAGC 577
Query 530 -CAACCTAAACATTATAAACACTTCTCCGATGCCAAAACCAGGTACACAAGGACAAGCTC 588
| |||| | ||||| ||||||| |||| ||||| ||||||||| |||| ||||||||||
Sbjct 578 TC-ACCTCACCATTAAAAACACTGCTCCAATGCCGAAACCAGGTTCACAGGGACAAGCTC 636
Query 589 TAGCTATGAGAATCAACGGC-GATAAGGCTGCCTTCTACAACTGCAGATTCTATGGTTTT 647
|||| ||||| |||||| || |||||||| || ||||| | || |||||| ||||||||
Sbjct 637 TAGCAATGAGGATCAAC-GCTGATAAGGCAGCTTTCTATAGTTGTAGATTCCATGGTTTT 695
Query 648 CAAGACACTCTTTGCGACGA-TAGAGGCAACCATTTCTTTAAGAATTGTTACATCGAAGG 706
||||| ||||| || ||||| || |||||||||||||| ||| ||||||||||||||||
Sbjct 696 CAAGATACTCTCTGTGACGACAAG-GGCAACCATTTCTTCAAGGATTGTTACATCGAAGG 754
Query 707 AACCTATGATTTTATCTTTGGAAGAGGAGCTTCCTTGTACTTGACTACGCAATTGCACGC 766
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 755 AACTTATGATTTTATCTTTGGAAGAGGAGCTTCCTTGTACTTGAATACGCAATTGCACGC 814
Query 767 TGTTGGAGATGGATTAAGAGTGATCGCAGCACACAA-TCGACAGAGTACAAACGAGCAAA 825
||||||||||||||||||||||||| |||| || | | |||| ||| ||| ||| ||||
Sbjct 815 TGTTGGAGATGGATTAAGAGTGATCACAGCTCA-AGGTAGACAAAGTGCAACCGAACAAA 873
Query 826 ACGGGTATTCGTTCGTGCATTGCAAGGTTACTGGAGTCGGAACCGGGATCTACTTGGGTA 885
|||| || |||||||||| ||||| || |||||| ||||||||| ||||| ||||| |
Sbjct 874 ACGGATACACGTTCGTGCACTGCAAAGTCACTGGAACCGGAACCGGAATCTATTTGGGCA 933
Query 886 GGGCTTGGATGAGCCACCCTAAGGTCGTCTATTCCTACACTGAAATGTCTAGTGTCGTCA 945
|| ||||||||||||||||||| ||||||||| | | ||| || ||| | || || ||||
Sbjct 934 GGTCTTGGATGAGCCACCCTAAAGTCGTCTATGCTTTCACAGAGATGACCAGCGTGGTCA 993
Query 946 ACCCATCTGGATGGCAAG-AGAACAG-AGTGCGCGCGC-ATGATAGGACGGTGTTCTATG 1002
| |||||||| ||| | | ||||| | |||| | |||| | ||||||||||||||
Sbjct 994 ATCCATCTGGCTGG-AGGGAGAACCTCAAC-CGCG-GATATGACAAGACGGTGTTCTATG 1050
Query 1003 GAGAATACATGTGCA-CGGGACCAGGATCACACAAAGCGAAGAGAGTGGCACACACACAA 1061
||||||||| ||| ||| |||||| |||||| || |||||||||| | ||||||||
Sbjct 1051 GAGAATACAAGTGTTTCGG-ACCAGGGTCACACTTAGAGAAGAGAGTGCCTTACACACAA 1109
Query 1062 GACATTGACAACAAA-GAAGCTAA-CCAATTCCTTACCCTCGGCTACATCAAAGGCTCCA 1119
|| |||||||| ||| |||| || || ||||| || || || ||||| || |||||||
Sbjct 1110 GATATTGACAA-AAACGAAGTTACGCCT-TTCCTCACTCTTGGTTACATTAAGGGCTCCA 1167
Query 1120 AATGGCTTCTCCCTCCTCC 1138
|||||| || ||||||||
Sbjct 1168 CATGGCTACTTCCTCCTCC 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62298876345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5