BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487574 Length=1302 Score E Sequences producing significant alignments: (Bits) Value AT5G07430.1 | Symbols: | Pectin lyase-like superfamily protein... 1953 0.0 > AT5G07430.1 | Symbols: | Pectin lyase-like superfamily protein | chr5:2352439-2354202 FORWARD LENGTH=1329 Length=1329 Score = 1953 bits (1057), Expect = 0.0 Identities = 1243/1328 (94%), Gaps = 31/1328 (2%) Strand=Plus/Plus Query 1 TTTTT-AAAGTAAATAAGATAGTAATAGTAACACGTAGtttttttttttttcatttt-at 58 ||||| ||||||||||||||||||||| |||||| ||| ||||| ||||| |||| || Sbjct 1 TTTTTAAAAGTAAATAAGATAGTAATATTAACACTTAG---TTTTTCTTTTCCTTTTCAT 57 Query 59 tattttcttttattttGT---A-AAAT------AAATAAAAG--------AAGATGGGTT 100 |||||||||||||||||| | |||| ||||||||| |||||||||| Sbjct 58 TATTTTCTTTTATTTTGTAACAGAAATAAAAGAAAATAAAAGAAAATAAAAAGATGGGTT 117 Query 101 ACATTTCAATGTCCGTGGTTGCATTCCTTGTTGTTTTTGCTTCGCCGTTGGTTCTAGCCA 160 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 118 ACATTTCAATGTCCGTGGTTGCATTCCTTGTTGTTTTTGCTTCGCCGGTGGTTCTAGCCA 177 Query 161 CCGATACAGATCCGATTCCTGAAACCAGAGCCCAAATCCCGCAATGGTTCAAGGCCAACG 220 ||||||||||||||||||| |||| |||||||||||||||||||||||| || | |||| Sbjct 178 CCGATACAGATCCGATTCCAGAAAACAGAGCCCAAATCCCGCAATGGTTTAAAACAAACG 237 Query 221 TTAAACCATATTCCCAGAGAAAGGGCACGCTAGACCCCGCCCTCGAAGCTGCTGAAGCAG 280 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 TTAAACCATATTCCCAGAGAAAGGGCACGCTAGACCCCGCCCTCGAAGCTGCTGAAGCAG 297 Query 281 CGCGACAAATTATCACCGTGAATCAAAAAGGAGGCGCTAATTTCAAGACGAT-AAATGAA 339 ||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| ||| Sbjct 298 CGCGACAAATTATCACCGTGAATCAAAAAGGTGGCGCTAATTTCAAGAC-ATTAAACGAA 356 Query 340 GCTATCAAGAGCATTCCAACAGGAAACAAGAACCGTGTGATCATCAAGTTGGCTCCTGGT 399 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 357 GCTATCAAGAGCATTCCGACAGGAAACAAGAACCGTGTGATCATCAAGTTGGCTCCTGGT 416 Query 400 GTCTACAATGAGAAGGTCACGATCGACATAGCTCGACCATTCGTTACATTGCTAGGTCAA 459 || ||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||| Sbjct 417 GTATACAATGAGAAGGTCACAATCGACATAGCTCGACCATTCATTACATTGCTTGGTCAA 476 Query 460 CCTGGTGCGGAAACGGTCTTGACTTACCATGGGACAGCCGCTAAGTACGGAACCGTAGAG 519 ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||| Sbjct 477 CCTGGTGCGGAAACGGTCTTGACTTACCACGGGACAGCCGCTCAGTACGGAACCGTTGAG 536 Query 520 AGTGCAACTCTTATTGTCTGGGCCGAGTATTTCTTGGCAGCTCACCTCACCATTAAAAAT 579 |||||||||||||| |||||||| || |||||| |||||||||||||||||||||||| Sbjct 537 AGTGCAACTCTTATCGTCTGGGCTGAATATTTCCAGGCAGCTCACCTCACCATTAAAAAC 596 Query 580 ACTGCTCCAATGCCGAAACCAGGTTCACAAGGACAAGCTCTAGCTATGAGGATCAACGCT 639 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct 597 ACTGCTCCAATGCCGAAACCAGGTTCACAGGGACAAGCTCTAGCAATGAGGATCAACGCT 656 Query 640 GATAAGGCAGCTTTCTACAGCTGTAGATTCCATGGTTTTCAAGATACTCTCTGTGACGAC 699 ||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| Sbjct 657 GATAAGGCAGCTTTCTATAGTTGTAGATTCCATGGTTTTCAAGATACTCTCTGTGACGAC 716 Query 700 AAAGGCAACCACTTT-TTCAAGGATTGTTACATCGAAGGGACCTATGATTTTATCTTCGG 758 || |||||||| ||| ||||||||||||||||||||||| || |||||||||||||| || Sbjct 717 AAGGGCAACCA-TTTCTTCAAGGATTGTTACATCGAAGGAACTTATGATTTTATCTTTGG 775 Query 759 AAGAGGAGCTTCCTTGTACTTGAATACGCAATTGCACGCTGTTGGAGATGGATTAAGAGT 818 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 776 AAGAGGAGCTTCCTTGTACTTGAATACGCAATTGCACGCTGTTGGAGATGGATTAAGAGT 835 Query 819 GATCACAGCACAAGGTAGACAAAGTGCAAACGAACAAAACGGATACACGTTCGTGCATTG 878 ||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| || Sbjct 836 GATCACAGCTCAAGGTAGACAAAGTGCAACCGAACAAAACGGATACACGTTCGTGCACTG 895 Query 879 CAAAGTCACTGGAACCGGAACCGGAATCTATTTGGGCAGGTCTTGGATGAGCCACCCAAA 938 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 896 CAAAGTCACTGGAACCGGAACCGGAATCTATTTGGGCAGGTCTTGGATGAGCCACCCTAA 955 Query 939 AGTCGTCTATGCTTTCACAGAGATGACCAGCGTGGTCAACCCATCTGGCTGGAGGGAGAA 998 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 956 AGTCGTCTATGCTTTCACAGAGATGACCAGCGTGGTCAATCCATCTGGCTGGAGGGAGAA 1015 Query 999 CCTCAACCGCGGATATGATAAGACGGTTTTCTATGGAGAATACAAGTGTTTCGGACCAGG 1058 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 1016 CCTCAACCGCGGATATGACAAGACGGTGTTCTATGGAGAATACAAGTGTTTCGGACCAGG 1075 Query 1059 GTCACACTTAGAGAAGAGAGTGCCTTACACACAAGATATTGACCAAAACGAAGTTAGGCC 1118 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| Sbjct 1076 GTCACACTTAGAGAAGAGAGTGCCTTACACACAAGATATTGACAAAAACGAAGTTACGCC 1135 Query 1119 TTTCCTCAGTCTTGGTTACATTAAGGGCTCCACATGGCTACTTCCCCCTCCTAAATACTG 1178 |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1136 TTTCCTCACTCTTGGTTACATTAAGGGCTCCACATGGCTACTTCCTCCTCCTAAATACTG 1195 Query 1179 AAATTTTTCTTAAGACAAAATATTTGTTGTAACT--GTTCTTTAATTTATAAATGAAATG 1236 |||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||| Sbjct 1196 AAATTTTTCTTAAGACAACTTATTTGTTGTAACACCGTTCTTTAATTTATAATTGAAATG 1255 Query 1237 TTCCCATCTTCTTA-TA-CTTTCTTTCTTTTTTGTATTGCTTAAGATATGAATTGATCAA 1294 |||||||||| ||| | |||| ||| ||||||||||||||||||||||||||||||||| Sbjct 1256 TTCCCATCTTTTTAGTTTCTTTATTTTTTTTTTGTATTGCTTAAGATATGAATTGATCAA 1315 Query 1295 TATTTTTT 1302 |||||||| Sbjct 1316 TATTTTTT 1323 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 64055895420 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5