BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487574
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07430.1 | Symbols: | Pectin lyase-like superfamily protein... 1953 0.0
> AT5G07430.1 | Symbols: | Pectin lyase-like superfamily protein
| chr5:2352439-2354202 FORWARD LENGTH=1329
Length=1329
Score = 1953 bits (1057), Expect = 0.0
Identities = 1243/1328 (94%), Gaps = 31/1328 (2%)
Strand=Plus/Plus
Query 1 TTTTT-AAAGTAAATAAGATAGTAATAGTAACACGTAGtttttttttttttcatttt-at 58
||||| ||||||||||||||||||||| |||||| ||| ||||| ||||| |||| ||
Sbjct 1 TTTTTAAAAGTAAATAAGATAGTAATATTAACACTTAG---TTTTTCTTTTCCTTTTCAT 57
Query 59 tattttcttttattttGT---A-AAAT------AAATAAAAG--------AAGATGGGTT 100
|||||||||||||||||| | |||| ||||||||| ||||||||||
Sbjct 58 TATTTTCTTTTATTTTGTAACAGAAATAAAAGAAAATAAAAGAAAATAAAAAGATGGGTT 117
Query 101 ACATTTCAATGTCCGTGGTTGCATTCCTTGTTGTTTTTGCTTCGCCGTTGGTTCTAGCCA 160
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 118 ACATTTCAATGTCCGTGGTTGCATTCCTTGTTGTTTTTGCTTCGCCGGTGGTTCTAGCCA 177
Query 161 CCGATACAGATCCGATTCCTGAAACCAGAGCCCAAATCCCGCAATGGTTCAAGGCCAACG 220
||||||||||||||||||| |||| |||||||||||||||||||||||| || | ||||
Sbjct 178 CCGATACAGATCCGATTCCAGAAAACAGAGCCCAAATCCCGCAATGGTTTAAAACAAACG 237
Query 221 TTAAACCATATTCCCAGAGAAAGGGCACGCTAGACCCCGCCCTCGAAGCTGCTGAAGCAG 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TTAAACCATATTCCCAGAGAAAGGGCACGCTAGACCCCGCCCTCGAAGCTGCTGAAGCAG 297
Query 281 CGCGACAAATTATCACCGTGAATCAAAAAGGAGGCGCTAATTTCAAGACGAT-AAATGAA 339
||||||||||||||||||||||||||||||| ||||||||||||||||| || ||| |||
Sbjct 298 CGCGACAAATTATCACCGTGAATCAAAAAGGTGGCGCTAATTTCAAGAC-ATTAAACGAA 356
Query 340 GCTATCAAGAGCATTCCAACAGGAAACAAGAACCGTGTGATCATCAAGTTGGCTCCTGGT 399
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 GCTATCAAGAGCATTCCGACAGGAAACAAGAACCGTGTGATCATCAAGTTGGCTCCTGGT 416
Query 400 GTCTACAATGAGAAGGTCACGATCGACATAGCTCGACCATTCGTTACATTGCTAGGTCAA 459
|| ||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||
Sbjct 417 GTATACAATGAGAAGGTCACAATCGACATAGCTCGACCATTCATTACATTGCTTGGTCAA 476
Query 460 CCTGGTGCGGAAACGGTCTTGACTTACCATGGGACAGCCGCTAAGTACGGAACCGTAGAG 519
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||
Sbjct 477 CCTGGTGCGGAAACGGTCTTGACTTACCACGGGACAGCCGCTCAGTACGGAACCGTTGAG 536
Query 520 AGTGCAACTCTTATTGTCTGGGCCGAGTATTTCTTGGCAGCTCACCTCACCATTAAAAAT 579
|||||||||||||| |||||||| || |||||| ||||||||||||||||||||||||
Sbjct 537 AGTGCAACTCTTATCGTCTGGGCTGAATATTTCCAGGCAGCTCACCTCACCATTAAAAAC 596
Query 580 ACTGCTCCAATGCCGAAACCAGGTTCACAAGGACAAGCTCTAGCTATGAGGATCAACGCT 639
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 597 ACTGCTCCAATGCCGAAACCAGGTTCACAGGGACAAGCTCTAGCAATGAGGATCAACGCT 656
Query 640 GATAAGGCAGCTTTCTACAGCTGTAGATTCCATGGTTTTCAAGATACTCTCTGTGACGAC 699
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 657 GATAAGGCAGCTTTCTATAGTTGTAGATTCCATGGTTTTCAAGATACTCTCTGTGACGAC 716
Query 700 AAAGGCAACCACTTT-TTCAAGGATTGTTACATCGAAGGGACCTATGATTTTATCTTCGG 758
|| |||||||| ||| ||||||||||||||||||||||| || |||||||||||||| ||
Sbjct 717 AAGGGCAACCA-TTTCTTCAAGGATTGTTACATCGAAGGAACTTATGATTTTATCTTTGG 775
Query 759 AAGAGGAGCTTCCTTGTACTTGAATACGCAATTGCACGCTGTTGGAGATGGATTAAGAGT 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 AAGAGGAGCTTCCTTGTACTTGAATACGCAATTGCACGCTGTTGGAGATGGATTAAGAGT 835
Query 819 GATCACAGCACAAGGTAGACAAAGTGCAAACGAACAAAACGGATACACGTTCGTGCATTG 878
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 836 GATCACAGCTCAAGGTAGACAAAGTGCAACCGAACAAAACGGATACACGTTCGTGCACTG 895
Query 879 CAAAGTCACTGGAACCGGAACCGGAATCTATTTGGGCAGGTCTTGGATGAGCCACCCAAA 938
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 896 CAAAGTCACTGGAACCGGAACCGGAATCTATTTGGGCAGGTCTTGGATGAGCCACCCTAA 955
Query 939 AGTCGTCTATGCTTTCACAGAGATGACCAGCGTGGTCAACCCATCTGGCTGGAGGGAGAA 998
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 956 AGTCGTCTATGCTTTCACAGAGATGACCAGCGTGGTCAATCCATCTGGCTGGAGGGAGAA 1015
Query 999 CCTCAACCGCGGATATGATAAGACGGTTTTCTATGGAGAATACAAGTGTTTCGGACCAGG 1058
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1016 CCTCAACCGCGGATATGACAAGACGGTGTTCTATGGAGAATACAAGTGTTTCGGACCAGG 1075
Query 1059 GTCACACTTAGAGAAGAGAGTGCCTTACACACAAGATATTGACCAAAACGAAGTTAGGCC 1118
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||
Sbjct 1076 GTCACACTTAGAGAAGAGAGTGCCTTACACACAAGATATTGACAAAAACGAAGTTACGCC 1135
Query 1119 TTTCCTCAGTCTTGGTTACATTAAGGGCTCCACATGGCTACTTCCCCCTCCTAAATACTG 1178
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1136 TTTCCTCACTCTTGGTTACATTAAGGGCTCCACATGGCTACTTCCTCCTCCTAAATACTG 1195
Query 1179 AAATTTTTCTTAAGACAAAATATTTGTTGTAACT--GTTCTTTAATTTATAAATGAAATG 1236
|||||||||||||||||| ||||||||||||| |||||||||||||||| |||||||
Sbjct 1196 AAATTTTTCTTAAGACAACTTATTTGTTGTAACACCGTTCTTTAATTTATAATTGAAATG 1255
Query 1237 TTCCCATCTTCTTA-TA-CTTTCTTTCTTTTTTGTATTGCTTAAGATATGAATTGATCAA 1294
|||||||||| ||| | |||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1256 TTCCCATCTTTTTAGTTTCTTTATTTTTTTTTTGTATTGCTTAAGATATGAATTGATCAA 1315
Query 1295 TATTTTTT 1302
||||||||
Sbjct 1316 TATTTTTT 1323
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64055895420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5