BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487575
Length=1583
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07440.1 | Symbols: GDH2 | glutamate dehydrogenase 2 | chr5:... 2394 0.0
AT1G42490.1 | Symbols: | pseudogene, glutamate dehydrogenase (... 472 6e-132
> AT5G07440.1 | Symbols: GDH2 | glutamate dehydrogenase 2 | chr5:2355937-2358194
FORWARD LENGTH=1634
Length=1634
Score = 2394 bits (1296), Expect = 0.0
Identities = 1505/1600 (94%), Gaps = 38/1600 (2%)
Strand=Plus/Plus
Query 20 ttc-ttcttcttc-ATTCATCACAACAAACCAAAAACTCCAAGTTTTTACCTTTTTCCCA 77
||| ||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 10 TTCTTTCTTCTTCAATTCATCACAACAAATCAAAAACTCCAAGTTCTTACCTTTTTCCCA 69
Query 78 TTT-CAATCGGTTAATTTCTCCGATCACGAGATACAAATTTCAGTTTTCTGAAATCTTGG 136
||| |||||||| |||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 70 TTTACAATCGGTAAATTTCTCCGATCACGAGATACAAATTTCA-CTTTCTGATATCTTGG 128
Query 137 ATCTTCCGATCACtttgga-tttttggtttgttga-tttttgtttccctttg-------a 187
||||||||||||||||| | ||||||||||||||| ||||| ||| |||| |
Sbjct 129 ATCTTCCGATCACTTTGAATTTTTTGGTTTGTTGATTTTTTTTTTTTTTTTGTTCCATAA 188
Query 188 agttcgaattttttttttAG-TGAAACAATGAATGCTTTAGCTGCAACGAACAGAAACTT 246
|||||||||||||| | || ||||| |||||||||||||||||||| |||||||||||
Sbjct 189 AGTTCGAATTTTTTATAGAGAAGAAACCATGAATGCTTTAGCTGCAACAAACAGAAACTT 248
Query 247 CCGTCATGCATCGCGAATTCTGGGTTTGGATTCGAAGATCGAGAGAAGTCTTATGATCCC 306
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 249 CCGTCATGCATCTCGAATCCTGGGTTTGGATTCGAAGATCGAGAGAAGTCTTATGATCCC 308
Query 307 ATTTAGAGAAATCAAGGTTGAGTGTACGATACCTAAAGATGATGGAACTCTGGTTTCGTA 366
|||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||
Sbjct 309 ATTTAGAGAAATCAAGGTTGAGTGTACGATTCCTAAAGACGATGGCACTCTGGTTTCATA 368
Query 367 CATCGGATTTAGGGTTCAACATGACAATGCTCGTGGACCCATGAAAGGTGGAATTAGATA 426
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 369 CATCGGATTTAGGGTTCAACATGACAATGCTCGTGGACCCATGAAAGGTGGAATCAGATA 428
Query 427 TCATCCTGAGGTTGATCCCGATGAAGTGAACGCACTAGCTCAGCTGATGACTTGGAAAAC 486
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 429 TCATCCTGAGGTTGATCCAGATGAAGTTAACGCACTAGCTCAGCTGATGACTTGGAAGAC 488
Query 487 GGCTGTAGCAGACATTCCATACGGTGGAGCTAAAGGTGGAATTGGATGTAGTCCTCGTGA 546
||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 489 TGCTGTAGCAGATATTCCATATGGTGGTGCTAAAGGTGGAATTGGATGTAGTCCTCGTGA 548
Query 547 CTTGAGTTTGAGCGAGCTTGAGAGGTTGACTCGTGTCTTCACGCAGAAGATTCATGATCT 606
|||||||||||||||||||||||||||||||||||| || || |||||||||||||||||
Sbjct 549 CTTGAGTTTGAGCGAGCTTGAGAGGTTGACTCGTGTGTTTACACAGAAGATTCATGATCT 608
Query 607 TATCGGTATTCATACCGATGTGCCTGCTCCTGACATGGGCACTAACGCTCAAACCATGGC 666
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 609 TATCGGTATTCATACCGATGTGCCTGCTCCTGATATGGGCACTAACGCTCAAACCATGGC 668
Query 667 TTGGATTCTTGATGAGTACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAA 726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 TTGGATTCTTGATGAGTACTCCAAGTTTCATGGTCATTCCCCTGCTGTTGTCACTGGAAA 728
Query 727 GCCCATTGATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGACGTGGTGTAGTCTT 786
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 729 GCCCATTGATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGTCGTGGTGTAGTATT 788
Query 787 TGCCACCGAAGCTCTTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTAT 846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 TGCCACCGAAGCTCTTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTAT 848
Query 847 TCAGGGTTTTGGGAATGTTGGAACATGGGCGGCGAAGCTGATCCACGAGAAAGGTGGAAA 906
||| |||||||||||||||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 849 TCAAGGTTTTGGGAATGTTGGAACATGGGCTGCGAAGCTGATCCACGAGAAAGGCGGTAA 908
Query 907 AGTGGTTGCAGTAAGCGACATTACTGGTGCAATCAGGAACCCTGAAGGTATCGACATCAA 966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 AGTGGTTGCAGTAAGCGACATTACTGGTGCAATCAGGAACCCTGAAGGTATCGACATCAA 968
Query 967 CGCTCTCATAAAACACAAAGACGCAACTGGAAGTCTCAATGATTTCAATGGTGGAGACGC 1026
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 969 CGCTCTCATAAAACACAAGGACGCAACTGGAAGTCTCAATGATTTCAATGGTGGAGACGC 1028
Query 1027 TATGAATTCAGACGAACTGCTCATTCATGAGTGCGATGTTCTCATTCCCTGCGCTCTTGG 1086
|||||||||||| ||| |||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1029 TATGAATTCAGATGAATTGCTCATTCATGAGTGTGATGTTCTCATTCCATGCGCTCTTGG 1088
Query 1087 TGGTGTCCTGAACAAGGAAAATGCTGGAGATGTGAAGGCAAAGTTTATAGTAGAGGCAGC 1146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 TGGTGTCCTGAACAAGGAAAATGCTGGAGATGTGAAGGCAAAGTTTATAGTAGAGGCAGC 1148
Query 1147 TAACCATCCAACTGATCCAGATGCTGATGAGATTCTATCGAAGAAAGGAGTGATTATACT 1206
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1149 TAACCATCCAACAGATCCAGATGCTGATGAGATTCTGTCGAAGAAAGGAGTGATTATACT 1208
Query 1207 TCCAGATATATACGCAAACGCAGGAGGAGTGACTGTGAGTTACTTCGAGTGGGTGCAGAA 1266
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1209 TCCAGATATCTACGCAAACGCAGGAGGAGTGACAGTGAGTTACTTCGAGTGGGTGCAGAA 1268
Query 1267 CATTCAAGGGTTCATGTGGGAAGAGGAAAAAGTGAACTTGGAGCTGCAAAAGTACATGAC 1326
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1269 CATTCAAGGATTCATGTGGGAAGAGGAAAAAGTGAACTTGGAGCTGCAAAAATACATGAC 1328
Query 1327 TCGAGCCTTTCACAACATCAAGACAATGTGCCATACTCATTCCTGCAACCTCCGTATGGG 1386
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1329 TCGAGCCTTTCACAACATCAAGACAATGTGCCATACTCATTCTTGCAACCTCCGTATGGG 1388
Query 1387 AGCTTTCACTCTGGGAGTTAACCGAGTCGCTCGAGCCACCCAGTTGCGTGGTTGGGAAGC 1446
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 AGCTTTCACTCTTGGAGTTAACCGAGTCGCTCGAGCCACCCAGTTGCGTGGTTGGGAAGC 1448
Query 1447 TTAATTCAGCTGAATcccccccT-TATACTCTGTTTCtt--tt--t-t-tttg---tttt 1496
||||||||| |||||||||| | ||||||||||||||| || | | ||| ||||
Sbjct 1449 TTAATTCAGTTGAATCCCCCT-TATATACTCTGTTTCTTGCTTGCTCTGTTTTCCATTTT 1507
Query 1497 ---------g-tttcatttttACTGAAAATCATTGAGCTT-CCGAAATGGAAAAGGAAAC 1545
| ||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct 1508 TTTTTTTTTGGTTTCATTGTTACTGAAAATCATTGAGCTTTCCGAAATGGAAAAGGAAAC 1567
Query 1546 AAATGGATTGAATAAA--CTAACAAATTGGAATAAAATAT 1583
|||||||||||||||| ||||||||||||||||||||||
Sbjct 1568 AAATGGATTGAATAAAAACTAACAAATTGGAATAAAATAT 1607
> AT1G42490.1 | Symbols: | pseudogene, glutamate dehydrogenase
(fragment), blastp match of 78% identity and 1.6e-94 P-value
to GP|15004984|dbj|BAB62170.1||AB066298 glutamate dehydrogenase
{Brassica napus} | chr1:15945877-15946985 REVERSE LENGTH=1109
Length=1109
Score = 472 bits (255), Expect = 6e-132
Identities = 367/418 (88%), Gaps = 19/418 (5%)
Strand=Plus/Plus
Query 1176 AGATTCTATCGAAGAAAGGAGTGATTATACTTCCAGATATATACGCAAACGCAGGAGGAG 1235
||||||| ||||||||||||||||||||||||||| ||||||||||||| | | ||||||
Sbjct 697 AGATTCTGTCGAAGAAAGGAGTGATTATACTTCCATATATATACGCAAATGGAAGAGGAG 756
Query 1236 TGACTGTGAGTTACTTCGAGTGGGTGCAGAACATTCAAGGGTTCATGTGGGAAGAGGAAA 1295
|||| ||||||||||| ||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 757 TGACGGTGAGTTACTTTGAGTGGGTGTAGAACATTCAA-AGTTCATGTGGGAAGAGGAAA 815
Query 1296 AAGTGAACTTGGAGCTGCAAAAGTACATGACTCGAGCCTTTCACAACATCAAGACAATGT 1355
|||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||
Sbjct 816 AAGTGAACTTGGAGCTGCAAAAATGCATAACTCGAGCCTTTCACAACATCAAGACAATGG 875
Query 1356 GCCATACTCATTCCTGCAACCTCCGTATGGGAGCTTTCACTCTGGGAGTTAACCGAGTCG 1415
|||||||||| || ||||||||||||||| ||||||||||||| ||||||||| ||||
Sbjct 876 GCCATACTCAGTCATGCAACCTCCGTATGCGAGCTTTCACTCTTGGAGTTAACTAAGTCA 935
Query 1416 CTCGAGCCACCCAGTTGCGTGGTTGGGAAGCTTAATTCAGCTGAATcccccccTTATAC- 1474
||||||||||||||||||||||||| |||| ||||||||| ||| ||||| ||| ||
Sbjct 936 CTCGAGCCACCCAGTTGCGTGGTTGAGAAGATTAATTCAGTTGAGTCCCC---TTA-ACA 991
Query 1475 TCTGTTTCtt--ttt-tt-t--tgtttt---g--tttcatttttACTGAAAATCATTGAG 1523
| |||||||| ||| || | | |||| | ||||||| ||||||||||||| ||||
Sbjct 992 TATGTTTCTTACTTTGTTCTCCTTTTTTTTTGGGTTTCATTATTACTGAAAATCAATGAG 1051
Query 1524 CTTCCGAAATGGAAAAGGAAACAAATGGATTGAATAAA--CTAACAAATTGGAATAAA 1579
| |||||||||||||| |||||||||||||||||||| |||| |||||||||||||
Sbjct 1052 CCTCCGAAATGGAAAAAAAAACAAATGGATTGAATAAAATCTAAAAAATTGGAATAAA 1109
Score = 375 bits (203), Expect = 5e-103
Identities = 237/254 (93%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 849 AGGGTTTTGGGAATGTTGGAACATGGGCGGCGAAGCTGATCCACGAGAAAGGTGGAAAAG 908
|||||||||||||||||||| |||||||||||||| |||||||| |||||||||| ||||
Sbjct 207 AGGGTTTTGGGAATGTTGGAGCATGGGCGGCGAAGTTGATCCACAAGAAAGGTGGGAAAG 266
Query 909 TGGTTGCAGTAAGCGACATTACTGGTGCAATCAGGAACCCTGAAGGTATCGACATCAACG 968
|||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 267 TGGTTGTAGTAAGCGACATTACTTGTGCAATCAGGAACCCTGAAGGTATCGACATCAATG 326
Query 969 CTCTCATAAAACACAAAGACGCAACTGGAAGTCTCAATGATTTCAATGGTGGAGACGCTA 1028
||||||||||||||||| | |||| |||| ||||||||||||||||||||||||||||||
Sbjct 327 CTCTCATAAAACACAAATATGCAATTGGATGTCTCAATGATTTCAATGGTGGAGACGCTA 386
Query 1029 TGAATTCAGACGAACTGCTCATTCATGAGTGCGATGTTCTCATTCCCTGCGCTCTTGGTG 1088
||||||| ||||||||||||||| |||||||| |||||||||| |||||||||||||| |
Sbjct 387 TGAATTCTGACGAACTGCTCATTTATGAGTGCAATGTTCTCATCCCCTGCGCTCTTGGCG 446
Query 1089 GTGTCCTGAACAAG 1102
||||||| ||||||
Sbjct 447 GTGTCCTAAACAAG 460
Score = 182 bits (98), Expect = 1e-44
Identities = 110/116 (95%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 734 GATCTTGGTGGTTCATTAGGTAGGGAAGCTGCCACAGGACGTGGTGTAGTCTTTGCCACC 793
||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||
Sbjct 1 GATCTTGGTGGTTCATTAGGTAGGGAAGCTGTCACATGACGAGGTGTAGTCTTTGCCACC 60
Query 794 GAAGCTCTTCTTGCTGAGTACGGGAAATCGATTCAGGGTTTGACATTTGTTATTCA 849
||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 61 GAAGCTCTTTTTGCTGAGTATGGGAAATCAATTCAGGGTTTGACATTTGTTATTCA 116
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78162248565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5