BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487579
Length=963
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07460.1 | Symbols: PMSR2, ATMSRA2 | peptidemethionine sulfo... 1303 0.0
AT5G61640.1 | Symbols: PMSR1, ATMSRA1 | peptidemethionine sulfo... 318 5e-86
> AT5G07460.1 | Symbols: PMSR2, ATMSRA2 | peptidemethionine sulfoxide
reductase 2 | chr5:2360634-2362013 REVERSE LENGTH=995
Length=995
Score = 1303 bits (705), Expect = 0.0
Identities = 891/975 (91%), Gaps = 36/975 (4%)
Strand=Plus/Plus
Query 1 TTAGCGTTGATTTTTAGGTGTTAATCTCTGACACGGACTAGCTTCTTTCTATATATAAAC 60
|||||| |||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 35 TTAGCGATGATTTTTAGGTGTTAATCTCT------GACTAGCTTCTTTATATATATAAAC 88
Query 61 GATCTTCACGAGGTTTTATCATCAACAATACACTTAAGACTTAACAATGGATTCTTCTCT 120
|| |||| ||||| | |||||| ||| ||| | | ||||||||||||||||||||||
Sbjct 89 GAGCTTCCCGAGG---TCTCATCATCAA-ACA-AT-ACACTTAACAATGGATTCTTCTCT 142
Query 121 GAAAACTCAGGAGCCTCAAGTAGTAGATACACCTGAAACTACTCCTTCTCCAATAGCTCA 180
|||||||||||| ||||||||||| | |||||| |||||||||| |||||||
Sbjct 143 GAAAACTCAGGAACCTCAAGTAGT-G--------GAAACTTCTCCTTCTCCGGTAGCTCA 193
Query 181 GGAGCCTCCTCAAGTGGCTGTCAAACCTGCGGTTGTTCCTTCTCCGATAGCTCAAGAGCC 240
||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 194 GGAGCCTCCTCAAGTAGCTGACAAACCTGCGATTGTTCCTTCTCCGATAGCTCAAGAGCC 253
Query 241 AGACAACGATGTTCCGGCGCCGGGAAACGAGTTTGCTGAGTTCGCCGCCGGATGTTTCTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 254 AGACAACGATGTTCCGGCGCCGGGAAACGAGTTTGCTGAGTTCGCCGCCGGTTGTTTCTG 313
Query 301 GGGAGTTGAGCTTGCTTTCCAGAGAATCCCTGGCGTGACCGTGACTGAAGTCGGTTACAC 360
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 314 GGGAGTGGAGCTTGCTTTCCAGAGAATCCCTGGCGTGACCGTGACTGAGGTCGGTTACAC 373
Query 361 TCAGGGGATCTCTCACAATCCATCTTATGAAGATGTCTGTACGAACACCACGAACCATGC 420
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 374 TCATGGGATCTCTCACAATCCGTCTTATGAAGATGTCTGTACGAACACCACGAACCATGC 433
Query 421 AGAAGTTGTTAGGGTTCAGTTTGATCCTAAAGAGTGCACTTATGAGACGCTTCTTGATCT 480
||||||||| |||||||| | |||||||||||| |||||||||||||| ||||||||| |
Sbjct 434 AGAAGTTGTCAGGGTTCAATATGATCCTAAAGAATGCACTTATGAGACACTTCTTGATTT 493
Query 481 GTTTTGGTCTAGGCATGATCCTACCACCTTGAATCGTCAGGGAAAACTTTTGGGAGCACA 540
|||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 494 GTTTTGGTCTAGACATAATCCTACCACCTTGAATCGTCAGGGAGAACTTTTGGGAGCACA 553
Query 541 ATACCGATCAGGTATATACTTCTACACACCGGAGCAAGAGAAACTAGCACGCGAGTCTCT 600
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 554 ATACCGATCAGGTATATATTTCTACACACCGGAGCAAGAGAAACTAGCACGCGAGTCTCT 613
Query 601 AGAGAAAGAGCAGATAAAACTGGAGGATAAGATTGTGACTGAGATCTTACCGGCAAAGAA 660
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 614 AGAGAAAGAGCAGAAAAAACTGGAGGATAAGATTGTGACTGAGATCTTACCGGCAAAGAA 673
Query 661 ATTCTACAAAGCTGAAGAATACCATCAGCAATACCTCGTCAAAGGCGGGATGCATGGCAA 720
|||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||
Sbjct 674 ATTCTACAAAGCTGAAGAATACCATCAGCAGTACCTTGTCAAAGGTGGGATGCATGGAAA 733
Query 721 CGCTCAATCACCTGCAAAGAGCTGCAAGGACCCTATCCGCTGCTACGGCTAATCAAAAAT 780
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 734 CGCTCAATCACCTGCAAAGAGCTGCAAGGACCCTATCCGCTGCTATGGCTAATCAAAAGC 793
Query 781 CATTTGTTGCTCTTCTCCCAAAACAGAGGACTCTCTCAGAGGACCTCTTTACCTGTTTG- 839
| |||||| ||||||||||||||||||||| |||| ||||||||||||||||||||| |
Sbjct 794 C-TTTGTTCCTCTTCTCCCAAAACAGAGGATTCTCCCAGAGGACCTCTTTACCTGTT-GC 851
Query 840 TGTGTTGGTTTATGTGTGTG--T-TA---ATATGTACTTGTCAGCTCAT-A--CATAATA 890
| ||||||||| |||||||| | | |||||||||||||| ||||| | |||||||
Sbjct 852 TTTGTTGGTTTGTGTGTGTGCGTGTGTTTATATGTACTTGTCATCTCATCATACATAATA 911
Query 891 AAAGATGTGGGATCATCTCACCTTTGT-AAACTTCTCTTAGTTAGTC-AAATTCAACTAA 948
||||||||||||||||||||||||||| ||| |||| || |||| || ||||||||||||
Sbjct 912 AAAGATGTGGGATCATCTCACCTTTGTGAAA-TTCTTTTCGTTACTCCAAATTCAACTAA 970
Query 949 TAAATATTTGAATAA 963
|||||||||||||||
Sbjct 971 TAAATATTTGAATAA 985
> AT5G61640.1 | Symbols: PMSR1, ATMSRA1 | peptidemethionine sulfoxide
reductase 1 | chr5:24775035-24776390 FORWARD LENGTH=924
Length=924
Score = 318 bits (172), Expect = 5e-86
Identities = 443/571 (78%), Gaps = 30/571 (5%)
Strand=Plus/Plus
Query 217 TCCTTCTCCGATAGCTCAAG-AGCCAGACAACGATGTTCCGGCGCCGGGAAACGAGTTTG 275
||||||||| || || |||| | | ||| |||| | |||||||||||||||| |||||
Sbjct 126 TCCTTCTCCAATCGCACAAGTAATC-GACGACGAAGCTCCGGCGCCGGGAAACCAGTTTA 184
Query 276 CTGAGTTCGCCGCCGGATGTTTCTGGGGAGTTGAGCTT-GCTTTCCAGAGAATCCCTGGC 334
|| | |||| |||||| ||||||||| | || || || || | ||||||| | || ||
Sbjct 185 CTCAATTCGGCGCCGGTTGTTTCTGGAGCGTGGA-ATTAGCGTACCAGAGAGTTCCAGGA 243
Query 335 GTGAC-CGTGACTGAAGTCGGTTACACTCAGGGGATCTCTCACAATCCATCTTATGAAGA 393
||||| | || || || ||||| |||| |||||| ||||| |||| ||||| ||||
Sbjct 244 GTGACTC-AAACAGAGGTTGGTTATTCTCAAGGGATCACTCACGATCCTTCTTACAAAGA 302
Query 394 TGTCTGTACGA-ACACCACGAACCATGCAGAAG-TTGTTAGGGTTCAGTTTGATCCTAAA 451
||| ||| | | |||||||| ||||| | || ||||| | ||||| | |||||| |||
Sbjct 303 TGTTTGTTC-AGGTACCACGAATCATGCCG-AGATTGTTCGTGTTCAATATGATCCAAAA 360
Query 452 GAGTGCACTTATGAGACGCTTCTTGATCTGTTTTGGTCTAGGCATGATCCTACCACCTTG 511
||||| | ||| || |||| |||||| |||| ||||||| ||||||||| ||||| |||
Sbjct 361 GAGTGTAGTTACCAGTCGCTGCTTGATTTGTTCTGGTCTAAGCATGATCCCACCACTTTG 420
Query 512 AATCGTCAGGGAAAACTTTTGGGAGCACAATACCGATCAGGTATATACTTCTAC-ACACC 570
||||| |||||||| | ||||| | |||||||| ||||| ||||| |||||| || ||
Sbjct 421 AATCGGCAGGGAAATGATGTGGGAACCCAATACCGTTCAGGGATATATTTCTACAAC-CC 479
Query 571 GGAGCAAGAGAAACTAGCACGCGAGTCTCTAGAGAAAG-AGCAGATAA-AACTGGA--GG 626
||||||||||||||||||||||||||| || ||| | | ||| || || | || ||
Sbjct 480 GGAGCAAGAGAAACTAGCACGCGAGTCACTGGAGCG-GCACCAGC-AACAAGTTGACAGG 537
Query 627 ATAAGATTGTGACTGAGATCTTACCGGCAAAGAAATTCTACAAAGCTGAAGAATACCATC 686
| | | ||||||| |||||||||||||| |||||||| || | |||||| ||| | || |
Sbjct 538 A-AGG-TTGTGACAGAGATCTTACCGGCTAAGAAATTTTATAGAGCTGAGGAACATCACC 595
Query 687 AGCAATACCTCGTC-AAAGGCGGGATGCATGG-C--AACGCTCAATCACCTGCAAAGAG- 741
|||||||| | ||| ||||| |||| | ||| | || || ||||| | | ||| ||
Sbjct 596 AGCAATACTT-GTCTAAAGGAGGGAGGTTTGGTCTTAA-GC--AATCAACGGAAAA-AGG 650
Query 742 CTGCAAGGACCCTATCCGCTGCTACGGCTAA 772
|||||| ||||| |||||||||||||| |||
Sbjct 651 CTGCAACGACCCAATCCGCTGCTACGGGTAA 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119629886
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5