BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487581
Length=674
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07475.1 | Symbols: | Cupredoxin superfamily protein | chr5... 963 0.0
> AT5G07475.1 | Symbols: | Cupredoxin superfamily protein | chr5:2364745-2365605
REVERSE LENGTH=730
Length=730
Score = 963 bits (521), Expect = 0.0
Identities = 627/677 (93%), Gaps = 11/677 (2%)
Strand=Plus/Plus
Query 1 ATAGCGATGCAAGAAAACTAAACGCAATTTACAGAAAAAATACAAACAGCGTGCACTATG 60
||||| || |||||||| ||||||||||||| || ||||||||||||||||||||||||
Sbjct 13 ATAGCAATACAAGAAAATTAAACGCAATTTATTGAGAAAATACAAACAGCGTGCACTATG 72
Query 61 GAGAAGACGCCGACGATGCAATTTCTTTAT-AACCTCTGCATTATATTTGGGATTGTAGT 119
|||||||| ||| ||| |||||||||| | || |||||||| ||||||||| |||||||
Sbjct 73 AAGAAGACGTCGAAGATACAATTTCTTT-TCAATCTCTGCATCATATTTGGGGTTGTAGT 131
Query 120 AATAAGAAGATGCAATGCAACAACATACTTTGTGGGAGACAGCTCCGGTTGGGACATAAG 179
|||||||||||| || ||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 132 AATAAGAAGATGTAACGCAACGACATACTTTGTAGGAGACAGCTCCGGTTGGGACATAAG 191
Query 180 CTCCGATCTTGA-TACTTGGACTTCAGGCAAGCGATTCTCTCCTGGTGATGTTCTACTGT 238
||||||||| || | ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 192 CTCCGATCTCGAGT-CTTGGACTTCAGGCAAGCGATTCTCTCCTGGTGATGTTCTAATGT 250
Query 239 TCCAATACTCATCGACGCATAGTGTATACGAAGTGGCTAAAGACAACTACCAAAACTGCA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 251 TCCAATACTCATCGACGCATAGTGTATACGAAGTGGCTAAAGACAACTACCAAAATTGCA 310
Query 299 ACACAACAGATGCAATCCGTACGTTCACAAACGGGAACACGACCGTTGCTCTTTCCAAAC 358
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 311 ACACAACAGATGCGATCCGGACGTTCACAAACGGGAACACGACCGTTGCTCTTTCCAAAC 370
Query 359 CGGGAGACCGGTTCTTTGTATGTGGCAATAGGCTCCATTGCTTCGCTGGTATGAGGTTAC 418
||||| |||||||||||||||| || |||||||||||||||||||| |||||||||||||
Sbjct 371 CGGGAAACCGGTTCTTTGTATGCGGTAATAGGCTCCATTGCTTCGCCGGTATGAGGTTAC 430
Query 419 TAGTCCATGTTGAAGGCAATGGCCCATCTCAGGCCCCCGTGGGATCTCCCCAAGCCGCCA 478
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 431 TAGTCAATGTTGAAGGCAATGGCCCATCTCAGGCTCCCGTGGGATCTCCCCAAGCCGCCA 490
Query 479 CTGT-AGGGATTCTTCAACCATCTTCTAAAAAGAATAACCCTGCGACCGGAGTCGCTAGC 537
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 CT-TCAGGGATTCTTCAACCATCTTCTAAAAAGAATAACCCTGCGACCGGAGTCGCTAGC 549
Query 538 TCGGCCGCTCGTTTTGTTGGCGACAGCGGTTGGAGGGGTAATATGGCTACTTTTGTATAT 597
|| ||||| ||||||||||||||||||||||||||||||| |||| | ||||||||||
Sbjct 550 TCAGCCGCCCGTTTTGTTGGCGACAGCGGTTGGAGGGGTACCATGGGAATTTTTGTATAT 609
Query 598 TTTATGGTTTTTGCTTTTCCATTCATATGGTCTTGTTGATTAACAACTATAAAATCTATA 657
||||||||||||||||||||||||||||||| ||| ||||||| |||||| |||||
Sbjct 610 TTTATGGTTTTTGCTTTTCCATTCATATGGTTTTGCTGATTAAAAACTAT-----CTATA 664
Query 658 ATAAGAGTTTTCATGTA 674
||||| |||||||||||
Sbjct 665 ATAAGTGTTTTCATGTA 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32601961403
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5