BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487583
Length=988
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07500.1 | Symbols: PEI1 | Zinc finger C-x8-C-x5-C-x3-H type... 1541 0.0
> AT5G07500.1 | Symbols: PEI1 | Zinc finger C-x8-C-x5-C-x3-H type
family protein | chr5:2372619-2373655 FORWARD LENGTH=1037
Length=1037
Score = 1541 bits (834), Expect = 0.0
Identities = 939/990 (95%), Gaps = 6/990 (1%)
Strand=Plus/Plus
Query 1 GAAAGACATGTATTAAACCAAAGTAAATCTTTAGATCATTGCAAGGAAAAATGTTGAAAA 60
||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 48 GAAAGACATTTATTAAACCAAAATAACTCTTTAGATCATTGCAAGGAAAAATGTTGAAAA 107
Query 61 GTGTAAGTCCAATTGCATTCTACGATATCGGAGAGCATCAGCAATACTCTACTTTCGGGT 120
||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 108 GTGCAAGTCCAATGGCATTCTACGATATCGGAGAG---CAGCAATACTCTACTTTCGGGT 164
Query 121 ACATCGTAAGCAAACCTGGGAATGCAGGAGCTTACGAGATCGACCCTCCGATCCCAAACA 180
|||| |||||||||||||||| ||||||||||||||||| |||||| ||||||||||||
Sbjct 165 ACATTTTAAGCAAACCTGGGAACGCAGGAGCTTACGAGATTGACCCTTCGATCCCAAACA 224
Query 181 TCGACGATGCGATCTACGGCTCTGATGAGTTCCGCATGTACGCCTACAAGATCAAACGGT 240
|||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||||||||
Sbjct 225 TCGACGATGCGATCTACGGCTCAGATGAGTTCCGTATGTACGCTTACAAAATCAAACGGT 284
Query 241 GCCCTCGTACTCGTAGCCACGACTGGACGGAGTGTCCCTACGCTCACCGTGGCGAGAAAG 300
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 GTCCTCGTACTCGTAGCCACGACTGGACGGAGTGTCCCTACGCTCACCGTGGCGAGAAAG 344
Query 301 CCACACGCCGTGATCCTCGCCGTTACACTTACTGTGCCGTCGCATGCCCGGCTTTCCGAA 360
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 345 CCACACGCCGTGATCCTCGCCGTTACACTTACTGTGCAGTCGCATGCCCGGCTTTCCGAA 404
Query 361 ATGGCGCATGTCACCGTGGCGACTCATGCGAATTCGCGCATGGCGTATTCGAGTACTGGC 420
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 405 ATGGCGCATGCCACCGTGGCGACTCATGCGAATTCGCACATGGCGTATTCGAGTACTGGC 464
Query 421 TCCACCCGGCGCGTTACCGAACACGCGCCTGCAACGCCGGAAATTTGTGTCAGAGGAAAG 480
|||||||||||||||||||||||||||| || |||||||| || ||||||||||||||||
Sbjct 465 TCCACCCGGCGCGTTACCGAACACGCGCATGTAACGCCGGGAACTTGTGTCAGAGGAAAG 524
Query 481 TGTGTTTCTTTGCCCACGCACCGGAGCAGCTAAGGCAGTCTGAGGGAAAGCACAGGTGCA 540
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 525 TGTGTTTCTTTGCCCACGCGCCGGAGCAGCTAAGGCAGTCTGAAGGAAAGCACAGGTGCA 584
Query 541 GGTACGCCTATAGGCCAGTGAGGGCTAGAGGTGGAGGAAATGGTGATGGAGTGGCGATGA 600
||||||| |||||||| ||||||||||||||||| ||||| || ||||||||| ||||||
Sbjct 585 GGTACGCATATAGGCCGGTGAGGGCTAGAGGTGGTGGAAACGGCGATGGAGTGACGATGA 644
Query 601 GAATGGACGGCGAAGATTACGACACGTCACGGTCTCCGGTGAGAAGCGGGAAAGATGATT 660
||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 GAATGGACGACGAGGGTTACGACACGTCACGGTCTCCGGTGAGAAGCGGGAAAGATGATT 704
Query 661 TAGATAGTAACGAGGAGAAGGTGTTGTTGAAGTGTTGGAGTCGGATGAGCATTGTGGATG 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 TAGATAGTAACGAGGAGAAGGTGTTGTTGAAGTGTTGGAGTCGGATGAGCATTGTGGATG 764
Query 721 ATCATTATGAGCCGTCCGATTTGGATTTGGATTTGTCACATTTTGATTGGATCTCTGAGT 780
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 765 ATCATTATGAGCCGTCCGATTTGGATTTGGATTTGTCACACTTTGATTGGATCTCAGAGT 824
Query 781 TGGTCGATTAAATT-GGGAAATTTAAGCAGCCAACaaaaaaaaCCCGATAAATAAAGTGG 839
|||||||||||||| ||||||| |||||| ||||||| ||||||||||||||||||||
Sbjct 825 TGGTCGATTAAATTTGGGAAATCAAAGCAGAGAACAAAAGAAACCCGATAAATAAAGTGG 884
Query 840 ATTTTAACAAAATCCACAAGATCAAGATTCAAGATGAGAGATCTTGTCATGTATATGGTA 899
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 ATTTTGTTAAAATCCACAAGATCAAGATTCAAGATGAGAGATCTTGTCATGTATATGGTA 944
Query 900 AATTTAATTGTAATGATTTATTGCAATGTCGCAAAACGA-GTTACTTCTCTTTGCATGTA 958
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 945 AATTTAATTGTAATGATTTATTGCAATGTCGCAAAA-GAAGTTACTTCTCTTTGCATGTA 1003
Query 959 AACTGATTCTTGATCTTCTGTAAGTCTTTG 988
||| ||||||||||||||| ||||||||||
Sbjct 1004 AACAGATTCTTGATCTTCTATAAGTCTTTG 1033
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48375483561
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5