BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487587
Length=917
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07520.1 | Symbols: GRP18, ATGRP18, ATGRP-8 | glycine-rich p... 1395 0.0
AT5G07510.1 | Symbols: GRP14, ATGRP14, GRP-4, ATGRP-4 | glycine... 401 5e-111
> AT5G07520.1 | Symbols: GRP18, ATGRP18, ATGRP-8 | glycine-rich
protein 18 | chr5:2379924-2381317 REVERSE LENGTH=1058
Length=1058
Score = 1395 bits (755), Expect = 0.0
Identities = 867/921 (94%), Gaps = 8/921 (1%)
Strand=Plus/Plus
Query 1 AACAACCATCTGATAACAAAGTATGAGCCGAAGAACTCCATCAAAACAAATCTCACTCAT 60
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 AACAACCATCAGATAACAAAGTATGAGCCGAAGAACTCCATCAAATCAAATCTCACTCAT 60
Query 61 CAAACTTTAACATTTAATTATCACAATATGTTTTCTTTTCTTATCTTCCTGTTGGAGGTT 120
||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |
Sbjct 61 CAAACTTTAACATTTAACTATCACAATATGTTTTCTTTTCTTATCTTCTTGTTGGAGGCT 120
Query 121 TTTCAGGTGGTTATTGCTGCCGTGGTCTCCATTGTCTTCTTAGTGTTCGCGGGTCTAACA 180
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 TTTCAGGTGGTTATTGCTACCGTGGTCTCCATAGTCTTCTTAGTGTTCGCGGGTCTAACA 180
Query 181 CTGGTAGGTTCCGCCACGGCATTAACCATAACCACACCGCTTTTTATCATATTCAGTCCG 240
||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 181 CTGGTAGGTTCAGCCACGGCATTAACCATAACAACACCGCTTTTTATTATATTCAGTCCG 240
Query 241 ATTCTTGTACCAGCCACGATAGCCACTGCTGTCATAACCACAGGATTCACCACCGGTGGC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 241 ATTCTTGTACCAGCCACGATAGCCACTGCTGTCATAACCACAGGATTCACCACGGGTGGC 300
Query 301 GCACTCGGAGCGATGGCCGTTGCTCTCATTAGACGTAGGATGGGAG-TAAAGCCGACTGC 359
||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||
Sbjct 301 GCACTCGGAGCGATGGCCGTTGCTCTCATCAGACGTAGGATGGGAGCT-AAGCCGACTGC 359
Query 360 GGAAGGAACTTCGTCAACCCAACCTCTGCTCAAATTGCCAGTTTATGGTGGATATGGAGG 419
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 360 GGAAGGAACTTCGTCAGCCCAACCTCTTCTCAAATTGCCAGTTTATGGTGGATATGGAGG 419
Query 420 ATTTTGGGGAGGGAAGAAATTTTCTGGAACATTCGGGAATAAACCAGGGGGTGGAAATCC 479
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 ATTTTGGGGAGGAAAGAAATTTTCTGGAACATTCGGAAATAAACCAGGGGGTGGAAATCC 479
Query 480 ATTTGGAGACATCTCAAAATGGTTCGGACCAGGGGCCGCAGGTGGAGGTGCACCTGGAGG 539
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 480 GTTTGGAGACATCTCAAAATGGCTCGGACCAGGGGCCGCAGGTGGAGGTGCACCTGGAGG 539
Query 540 ACTT-GGAGGGGGCGGAAATCCGTTTGCAAACATCTCAAAATGGTTCGGACCAGGGGCCG 598
| || |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 540 A-TTAGGAGGGGGCGGAAATCCGTTTGGAAACATCTCAAAATGGTTCGGACCAGGGGCCG 598
Query 599 CAGGTGGAGGtgcccctgccgctgaagctgcgcctgccgctggagctgcgccagccgctg 658
||||||||| ||| |||| |||| | ||| |||||||||| |||||| ||||||||||
Sbjct 599 CAGGTGGAGATGCATCTGCTGCTGGTGGTGCACCTGCCGCTGAAGCTGCACCAGCCGCTG 658
Query 659 gagctgcgcctgccgctggagctgcgcctgccgctggagctgcgccagccgctggagctg 718
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 659 GAGCTGCGCCTGCCGCTGGAGCTGCGCCTGCCGCTGGAGCTGCGCCTGCCGCTGGAGCTG 718
Query 719 cgcctgccgctggagctgcgccagccgctggTGGAAGTACACCACCCACATGGTAAAGGA 778
||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 719 CGCCTGCTGCTGGAGCTGCTCCTGCCGCTGGTGGAAGTACACCACCCACATGGTAAAGGA 778
Query 779 AATAAGTCAAGTTGTTCCAACATGTATATTGTGCATTGATTCATAAGGAAACAAAAGCTT 838
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 AATAAGTCAAGTTGTTCCAACATGTATATTGTGCATTGATTCATAAGGAAACAAAAGCTT 838
Query 839 TTTAAAACGTTTTTTGTTCTTATGTAATCTCAAAGCTGATTA--TACTGAAATAAAGACT 896
|||||||||| ||||| || |||||| |||| ||| | | | | || | | || ||||
Sbjct 839 TTTAAAACGTCTTTTGCTCATATGTATTCTCCAAGGTCAA-AGCTGCTTACACAA-GACT 896
Query 897 ATGCTACAATGTTTATTAATT 917
||||||||||||| |||||||
Sbjct 897 ATGCTACAATGTTCATTAATT 917
Score = 147 bits (79), Expect = 3e-34
Identities = 185/231 (80%), Gaps = 27/231 (12%)
Strand=Plus/Plus
Query 465 AGGGGGTGGAAATCCATTTGGAGACATCTCAAAATGGTTCGGACCAGGGGCCGCAGGTGG 524
|||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 546 AGGGGGCGGAAATCCGTTTGGAAACATCTCAAAATGGTTCGGACCAGGGGCCGCAGGTGG 605
Query 525 AGGTGCACCTGGAGGACTTGGAGGGGGCGGAAATCCGTTTGCAAACATCTCAAAATGGTT 584
|| |||| ||| | || || || | | | || | || | || || ||
Sbjct 606 AGATGCATCTGCTG--CT-GGTGGTG-C--A---CC-T--GC---CG-CTGAAGCTG--- 646
Query 585 CGGACCAGGGGCCGCAGGTGGAGGtgcccctgccgctgaagctgcgcctgccgctggagc 644
| ||||| |||| ||||| ||| |||||||||| |||||||||||||||||||||
Sbjct 647 C--ACCAG---CCGC---TGGAGCTGCGCCTGCCGCTGGAGCTGCGCCTGCCGCTGGAGC 698
Query 645 tgcgccagccgctggagctgcgcctgccgctggagctgcgcctgccgctgg 695
|||||| |||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 699 TGCGCCTGCCGCTGGAGCTGCGCCTGCTGCTGGAGCTGCTCCTGCCGCTGG 749
> AT5G07510.1 | Symbols: GRP14, ATGRP14, GRP-4, ATGRP-4 | glycine-rich
protein 14 | chr5:2377710-2378829 REVERSE LENGTH=796
Length=796
Score = 401 bits (217), Expect = 5e-111
Identities = 278/306 (91%), Gaps = 9/306 (3%)
Strand=Plus/Plus
Query 18 AAAGTATGAGCCGAAGAACTCCATCAAAACAAATCTCACTCA-TCAAACTTTAACATTTA 76
|||||||||||| ||||||||||||||||||||||||| ||| | ||| ||||||| |
Sbjct 1 AAAGTATGAGCCAAAGAACTCCATCAAAACAAATCTCAGTCATTGAAA-TTTAACA--T- 56
Query 77 ATTATCACAATATGTTTTCTTTTCTTATCTTCC---TGTTGGAGGTTTTTCAGGTGGTTA 133
|||| ||| |||||||||||||| ||| ||| ||| ||||||||||||||||||||
Sbjct 57 -CTATCCCAAAATGTTTTCTTTTCTCATCCTCCAAGTGTCGGAGGTTTTTCAGGTGGTTA 115
Query 134 TTGCTGCCGTGGTCTCCATTGTCTTCTTAGTGTTCGCGGGTCTAACACTGGTAGGTTCCG 193
|||||||||||||||| || |||||||||||||| |||||||||||||||| |||||| |
Sbjct 116 TTGCTGCCGTGGTCTCTATAGTCTTCTTAGTGTTAGCGGGTCTAACACTGGCAGGTTCAG 175
Query 194 CCACGGCATTAACCATAACCACACCGCTTTTTATCATATTCAGTCCGATTCTTGTACCAG 253
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 176 CCACGGCATTAACCATAACCACACCGCTTTTTATCATATTCAGTCCGATTCTCGTACCAG 235
Query 254 CCACGATAGCCACTGCTGTCATAACCACAGGATTCACCACCGGTGGCGCACTCGGAGCGA 313
|||||||||||||||||||||||||||||||| ||||| | ||||||||||||||| |||
Sbjct 236 CCACGATAGCCACTGCTGTCATAACCACAGGACTCACCGCTGGTGGCGCACTCGGAACGA 295
Query 314 TGGCCG 319
||||||
Sbjct 296 TGGCCG 301
Score = 124 bits (67), Expect = 1e-27
Identities = 102/118 (86%), Gaps = 6/118 (5%)
Strand=Plus/Plus
Query 693 tggagctgcgccagccgctggagctgcgcctgccgctggagctgcgccagccgctggTG- 751
||||| ||| || |||||| | |||| ||||||||||||||||| ||||||||||| |
Sbjct 561 TGGAGATGCACCTCCCGCTGAAACTGCACCTGCCGCTGGAGCTGCACCAGCCGCTGGAGC 620
Query 752 -GAA---G-TACACCACCCACATGGTAAAGGAAATAAGTCAAGTTGTTCCAACATGTA 804
||| | | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 TGAACCGGCTGCACCACCCACATGGTAAAGGAAATAAGTCAAGTTGTTCCAACATGTA 678
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44808859124
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5