BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg487592 Length=659 Score E Sequences producing significant alignments: (Bits) Value AT5G07550.1 | Symbols: GRP19, ATGRP19 | glycine-rich protein 19... 904 0.0 > AT5G07550.1 | Symbols: GRP19, ATGRP19 | glycine-rich protein 19 | chr5:2388310-2389249 REVERSE LENGTH=650 Length=650 Score = 904 bits (489), Expect = 0.0 Identities = 607/662 (92%), Gaps = 15/662 (2%) Strand=Plus/Plus Query 1 CACCACCAAATCACAAACCATTCCATCAGATCAAATCCCAGCCGTTTAATTTGATCATCC 60 |||||| |||||| ||||||||| |||||| |||||||||||||||||| |||||||||| Sbjct 1 CACCACTAAATCATAAACCATTCGATCAGACCAAATCCCAGCCGTTTAACTTGATCATCC 60 Query 61 CAAAGATGTTTGAGATTATTCAGGCGGTTTTCGCTGCCGGGGCTGCACTAGCTCTTTTGA 120 |||||||||||||||||||||||||||| ||| | ||||||| ||||||||||||||||| Sbjct 61 CAAAGATGTTTGAGATTATTCAGGCGGTCTTCTCCGCCGGGGTTGCACTAGCTCTTTTGA 120 Query 121 CATTCTCCGCTATAACCCTCGGTGGCTCAGTGGTCGCATTTGCCATAAGCACACCACTTT 180 ||||| ||| |||||||||||| |||||||||||||||| | ||||||||||||||||| Sbjct 121 CATTCGCCGGTATAACCCTCGGCGGCTCAGTGGTCGCATGTATCATAAGCACACCACTTT 180 Query 181 TTGTCGTTTTCAGTCCCGTTCTCGTGCCAGCGACTATAGCCACTACATTGCTAGCTTCAG 240 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTGTCATTTTCAGTCCCGTTCTCGTGCCAGCGACTATAGCCACTACATTGCTAGCTTCAG 240 Query 241 GTTTCACAGCCTCCGGTTCCTTTGGTGCCACGGCTTTCTCCATCCTTGCGTGGATCTACA 300 |||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| Sbjct 241 GTTTCACAGCCTCCGGTTCCTTTGGTGCCACGGCTTTCACCATCCTTTCGTGGCTCTACA 300 Query 301 AGAGACGTACAGGGAGGGACCTGCCAAAAATTCCAGGATTGACGCCACCCGCGGCTCCGG 360 ||| |||||||||||||||||| |||||||||||||||||||||||||| | | |||||| Sbjct 301 AGAAACGTACAGGGAGGGACCTACCAAAAATTCCAGGATTGACGCCACC-G-G-CTCCGG 357 Query 361 CGTCTAATCCAGCAGGCTCCGGCGTCTAATCCTGCAGAATCGGGGAAATACGATTTGGCG 420 ||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| |||| Sbjct 358 CGTCTAACCCAGCAGGTTCCGGCGTCTAATCCAGCAGAATCGGGGAAATACGATTAGGCG 417 Query 421 TTTCCTAATTTGGGATGATGTAGGGAGGAACTTGATCATACTTAATTACTGGGGTTCCAT 480 |||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||||| Sbjct 418 TTTCCTAATTTGGGATGATGTATGAAGGAACTTGATCATACTAAATTACTGGGGTTCCAT 477 Query 481 AAATAAAA-TAAAGATTTATCCATCCTCTCTTTTATTAAA-TACTAGTTACCCCCGGATA 538 |||||||| |||| ||| ||| ||||||||||| || ||| ||||||||||| ||| | | Sbjct 478 AAATAAAAATAAAAATTGATCTATCCTCTCTTTAATAAAAATACTAGTTACCTCCG-A-A 535 Query 539 TTTCCAATATCATTCCATTGATGTATATCGTGTGTTACAAAAAGTATAATAAA-TGTAAT 597 | | | ||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 536 T----A-T--CATTCCATTGATGTATATCGTGTGTTACAAAAAGTATAATAAAATGTAAT 588 Query 598 CGTTTTTCTTGTACTTTTTTAATGAAGTAATATCAATGAGATTACCATAGATGGATTTTG 657 ||| ||| ||||| ||||||||||||||||||||| ||||||| |||||||||| ||||| Sbjct 589 CGTCTTTATTGTATTTTTTTAATGAAGTAATATCATTGAGATTGCCATAGATGGGTTTTG 648 Query 658 GG 659 || Sbjct 649 GG 650 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 31848449198 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5