BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487592
Length=659
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07550.1 | Symbols: GRP19, ATGRP19 | glycine-rich protein 19... 904 0.0
> AT5G07550.1 | Symbols: GRP19, ATGRP19 | glycine-rich protein
19 | chr5:2388310-2389249 REVERSE LENGTH=650
Length=650
Score = 904 bits (489), Expect = 0.0
Identities = 607/662 (92%), Gaps = 15/662 (2%)
Strand=Plus/Plus
Query 1 CACCACCAAATCACAAACCATTCCATCAGATCAAATCCCAGCCGTTTAATTTGATCATCC 60
|||||| |||||| ||||||||| |||||| |||||||||||||||||| ||||||||||
Sbjct 1 CACCACTAAATCATAAACCATTCGATCAGACCAAATCCCAGCCGTTTAACTTGATCATCC 60
Query 61 CAAAGATGTTTGAGATTATTCAGGCGGTTTTCGCTGCCGGGGCTGCACTAGCTCTTTTGA 120
|||||||||||||||||||||||||||| ||| | ||||||| |||||||||||||||||
Sbjct 61 CAAAGATGTTTGAGATTATTCAGGCGGTCTTCTCCGCCGGGGTTGCACTAGCTCTTTTGA 120
Query 121 CATTCTCCGCTATAACCCTCGGTGGCTCAGTGGTCGCATTTGCCATAAGCACACCACTTT 180
||||| ||| |||||||||||| |||||||||||||||| | |||||||||||||||||
Sbjct 121 CATTCGCCGGTATAACCCTCGGCGGCTCAGTGGTCGCATGTATCATAAGCACACCACTTT 180
Query 181 TTGTCGTTTTCAGTCCCGTTCTCGTGCCAGCGACTATAGCCACTACATTGCTAGCTTCAG 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGTCATTTTCAGTCCCGTTCTCGTGCCAGCGACTATAGCCACTACATTGCTAGCTTCAG 240
Query 241 GTTTCACAGCCTCCGGTTCCTTTGGTGCCACGGCTTTCTCCATCCTTGCGTGGATCTACA 300
|||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||
Sbjct 241 GTTTCACAGCCTCCGGTTCCTTTGGTGCCACGGCTTTCACCATCCTTTCGTGGCTCTACA 300
Query 301 AGAGACGTACAGGGAGGGACCTGCCAAAAATTCCAGGATTGACGCCACCCGCGGCTCCGG 360
||| |||||||||||||||||| |||||||||||||||||||||||||| | | ||||||
Sbjct 301 AGAAACGTACAGGGAGGGACCTACCAAAAATTCCAGGATTGACGCCACC-G-G-CTCCGG 357
Query 361 CGTCTAATCCAGCAGGCTCCGGCGTCTAATCCTGCAGAATCGGGGAAATACGATTTGGCG 420
||||||| |||||||| ||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 358 CGTCTAACCCAGCAGGTTCCGGCGTCTAATCCAGCAGAATCGGGGAAATACGATTAGGCG 417
Query 421 TTTCCTAATTTGGGATGATGTAGGGAGGAACTTGATCATACTTAATTACTGGGGTTCCAT 480
|||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||
Sbjct 418 TTTCCTAATTTGGGATGATGTATGAAGGAACTTGATCATACTAAATTACTGGGGTTCCAT 477
Query 481 AAATAAAA-TAAAGATTTATCCATCCTCTCTTTTATTAAA-TACTAGTTACCCCCGGATA 538
|||||||| |||| ||| ||| ||||||||||| || ||| ||||||||||| ||| | |
Sbjct 478 AAATAAAAATAAAAATTGATCTATCCTCTCTTTAATAAAAATACTAGTTACCTCCG-A-A 535
Query 539 TTTCCAATATCATTCCATTGATGTATATCGTGTGTTACAAAAAGTATAATAAA-TGTAAT 597
| | | ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 536 T----A-T--CATTCCATTGATGTATATCGTGTGTTACAAAAAGTATAATAAAATGTAAT 588
Query 598 CGTTTTTCTTGTACTTTTTTAATGAAGTAATATCAATGAGATTACCATAGATGGATTTTG 657
||| ||| ||||| ||||||||||||||||||||| ||||||| |||||||||| |||||
Sbjct 589 CGTCTTTATTGTATTTTTTTAATGAAGTAATATCATTGAGATTGCCATAGATGGGTTTTG 648
Query 658 GG 659
||
Sbjct 649 GG 650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31848449198
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5