BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487593
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07560.1 | Symbols: GRP20, ATGRP20 | glycine-rich protein 20... 643 0.0
> AT5G07560.1 | Symbols: GRP20, ATGRP20 | glycine-rich protein
20 | chr5:2390207-2391075 REVERSE LENGTH=754
Length=754
Score = 643 bits (348), Expect = 0.0
Identities = 632/758 (83%), Gaps = 64/758 (8%)
Strand=Plus/Plus
Query 1 AATTCCACAATCATCCG--ATCAAACAA-TTATGGCGCCCTTTCCACTCTCTTTGATTTT 57
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 AATTCCACAATCATCCGATATCAAACAAGCTATGGCGCCCTTTCCACTCTCTTTGATTTT 60
Query 58 TGGAAAGAATAAA---CGTCGCGACGACATACGATAC--CGACAAAAGCCGACGCTCAAG 112
||||||||| ||| |||||||||||| | ||||| ||||||||||||||||||||
Sbjct 61 TGGAAAGAAAAAACGTCGTCGCGACGAC-GA-GATACGAAGACAAAAGCCGACGCTCAAG 118
Query 113 GGTGTTATGACGGCTTTTCTTGCCAC-GCAAGCTGCAATATTCCTCTTGTTACTGGCCGG 171
|||||||||||||||||| ||||||| | |||||||||||| ||||||||| ||||||||
Sbjct 119 GGTGTTATGACGGCTTTTTTTGCCACTG-AAGCTGCAATATGCCTCTTGTTGCTGGCCGG 177
Query 172 TCTATCTTTAACCGGCACAGCCGTGGCACTAATCGCCTCCATGCCGGTATTCCTAGTATT 231
| ||||| ||||||||||||||||||||||| |||| ||||||||| ||||||| || ||
Sbjct 178 TATATCTCTAACCGGCACAGCCGTGGCACTATTCGCGTCCATGCCGCTATTCCTCGTTTT 237
Query 232 TAGCCCGGTTCTTGTACCCGCGGGTATAGCCACCACTATTCTTGCCGGAGGTTTAATGGC 291
|||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 238 TAGCCCCGTTCTTGTACCCGCGGGTATTGCCACCACTATTCTTGCTTCAGGTTTAATGGC 297
Query 292 TGGAGGCACCTCTGGTGTGACGGGTCTCACCATCTTAATGTGGCTCTACAAGCAATTTAC 351
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||
Sbjct 298 CGGAGGCACCTCTGGTGTGTCGGGTCTCACCATCTTAATGTGGCTCTACAAGAAATATAC 357
Query 352 GGGTAGAGACCTTCC---GAAAATTCCAGGATTGAAT-CCG-GGC-GGTGGAGCTG---C 402
|||||||||| |||| ||||||||||| || | ||| || |||||||||| |
Sbjct 358 GGGTAGAGACTTTCCAATTAAAATTCCAGG--TG-CTGCCGCAGCAGGTGGAGCTGCCCC 414
Query 403 AGCAGGTGGAGCTGCCCCTG--CC-GC--C-CCAGCTGC---CCCAGCAGCTAAACCGGC 453
||| | | |||||||||| || || | || || || |||||||||||||| ||
Sbjct 415 AGCCGCTCCCGCTGCCCCTGCCCCTGCTGCACCTGCCGCTAAACCAGCAGCTAAACCAGC 474
Query 454 AGCTAAGCC-TGCAGC-T--AAACCGGGC--GG--AT-GA-AA--AT-AAT-TC-A-A-G 496
|||||| || || || | ||| | | || || || || || || | | | |
Sbjct 475 AGCTAAACCGGGC-GCGTGAAAATTAGTCAAGGACATAGACAAGGATGCATGACGATATG 533
Query 497 G--ACA-TAG----ACAA-CATTGAAGTTCCATAAATTAAAGATAATTACCCA-T-Cttt 546
| | | | | |||| ||||||| |||||||||||||||||| ||| ||| | ||||
Sbjct 534 GAAAAATTTGCTCTACAACCATTGAAATTCCATAAATTAAAGATATTTATCCACTTCTTT 593
Query 547 tttt-GCTAAATACTAATTATTACGTGTTGATGAAAGTAAACTTCTCAAAT-GTCATTCT 604
|||| ||||| ||||||||||||||| |||||||| |||| ||||||| | ||||||||
Sbjct 594 TTTTTGCTAAGTACTAATTATTACGTACTGATGAAACTAAATTTCTCAA-TCGTCATTCT 652
Query 605 CTTAATGTATGCCGTGCTACAGAAACAATAACATATGTATGCATGTTTATTGTCCAATAT 664
|| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 653 ATTGATGTATGCCGTGCTACAGAAACAATAACATATATATGCATGTTTATTGTTTAATAT 712
Query 665 TTTTAAAACGAGGTTATATATATCACCGATTTCAACCT 702
||| ||||||||||||||||||| |||||||| |||||
Sbjct 713 TTTAAAAACGAGGTTATATATATAACCGATTTTAACCT 750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34008517519
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5