BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg487594

Length=691
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G07571.1 | Symbols:  | Oleosin family protein | chr5:2396432...   691    0.0   
  AT5G07572.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   625    2e-178


> AT5G07571.1 | Symbols:  | Oleosin family protein | chr5:2396432-2397423 
REVERSE LENGTH=766
Length=766

 Score =  691 bits (374),  Expect = 0.0
 Identities = 465/509 (91%), Gaps = 6/509 (1%)
 Strand=Plus/Minus

Query  156  TTGCACATGTAGTTCACGTATTATATGACTACGCTCCCGCTTGTAGAGCCAAGTTAAGAT  215
            |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct  569  TTGCACATGTAGTTCACGTATTCTATGACTACGCTCCCGCTTATAGAGCCAAGTTAAGAT  510

Query  216  GCTGAGAGCCGTCACACCGGAGGTGCCTCCAGCCATTAAACCTGAAGCAAGAATGGTGGC  275
            | |||||||||||| ||||||||| |||||||||||||||| | ||||||||| ||||||
Sbjct  509  GGTGAGAGCCGTCAGACCGGAGGTACCTCCAGCCATTAAACTTAAAGCAAGAACGGTGGC  450

Query  276  GGTAATACCCGCTGGTACGAGAACAGGGCTGAATACAAGGAATAGCGGCATGGAGGCGGC  335
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct  449  GGTAATACCCGCTGGTACGAGAACAGGGCTGAATACAAGGAAGAGCGGCATGGAGGCGGC  390

Query  336  TAACGCTATGGCTGTGCTGACTAGGGATAGACCGGCCAGCAACAAGAGGAATACTGCAGC  395
            |||||| ||||||||||  ||||| |||| ||||||||||||||||||||||||||| ||
Sbjct  389  TAACGCCATGGCTGTGCCAACTAGTGATAAACCGGCCAGCAACAAGAGGAATACTGCGGC  330

Query  396  TGTGGTGGCAAAAAACGCTGTCAAAACACCCTTAATCGTCGGCTTTGGGGATCGTACTCT  455
            ||| | ||||||||||||| |||||||||||||||||||||||||||| ||||||| |||
Sbjct  329  TGTAGAGGCAAAAAACGCTATCAAAACACCCTTAATCGTCGGCTTTGGAGATCGTAATCT  270

Query  456  CTTGCGTTTTTTCTTGCCAAACAACATTTTTAGTGGCCAGATAATCTTACTTGTTTTATC  515
            || |||||||||||||| |||||||||||||| |||||||| ||| || |||||||||||
Sbjct  269  CTCGCGTTTTTTCTTGCGAAACAACATTTTTAATGGCCAGAAAATATTCCTTGTTTTATC  210

Query  516  GGATGGTTACGTTGTGGGATTTCATGAACTATGACAGGGGATTTTTATGAACAGA----G  571
            ||||||||| |||||||||||||||||| || || || ||||||| ||||| |||    |
Sbjct  209  GGATGGTTATGTTGTGGGATTTCATGAATTAGGAGAGTGGATTTT-ATGAATAGATCTAG  151

Query  572  AGAGGTGTGATCTACGTGTACGGCACGTGCTT-ACCCCATGCGTAACGATGCAACTGAGT  630
            |||||| || |||||||| ||||||||||||| ||| ||||||||||||||||| ||| |
Sbjct  150  AGAGGTATGGTCTACGTGCACGGCACGTGCTTTACCTCATGCGTAACGATGCAAGTGACT  91

Query  631  GTTGAGCTCTACGTTACCTCAATGCCTCT  659
            |||||||||||||||||||||||||||||
Sbjct  90   GTTGAGCTCTACGTTACCTCAATGCCTCT  62


> AT5G07572.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: cellular_component unknown; Has 30201 Blast 
hits to 17322 proteins in 780 species: Archae - 12; Bacteria 
- 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses 
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2396708-2397548 
FORWARD LENGTH=729
Length=729

 Score =  625 bits (338),  Expect = 2e-178
 Identities = 427/470 (91%), Gaps = 6/470 (1%)
 Strand=Plus/Plus

Query  195  CTTGTAGAGCCAAGTTAAGATGCTGAGAGCCGTCACACCGGAGGTGCCTCCAGCCATTAA  254
            ||| |||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct  75   CTTATAGAGCCAAGTTAAGATGGTGAGAGCCGTCAGACCGGAGGTACCTCCAGCCATTAA  134

Query  255  ACCTGAAGCAAGAATGGTGGCGGTAATACCCGCTGGTACGAGAACAGGGCTGAATACAAG  314
            || | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  135  ACTTAAAGCAAGAACGGTGGCGGTAATACCCGCTGGTACGAGAACAGGGCTGAATACAAG  194

Query  315  GAATAGCGGCATGGAGGCGGCTAACGCTATGGCTGTGCTGACTAGGGATAGACCGGCCAG  374
            ||| ||||||||||||||||||||||| ||||||||||  ||||| |||| |||||||||
Sbjct  195  GAAGAGCGGCATGGAGGCGGCTAACGCCATGGCTGTGCCAACTAGTGATAAACCGGCCAG  254

Query  375  CAACAAGAGGAATACTGCAGCTGTGGTGGCAAAAAACGCTGTCAAAACACCCTTAATCGT  434
            |||||||||||||||||| ||||| | ||||||||||||| |||||||||||||||||||
Sbjct  255  CAACAAGAGGAATACTGCGGCTGTAGAGGCAAAAAACGCTATCAAAACACCCTTAATCGT  314

Query  435  CGGCTTTGGGGATCGTACTCTCTTGCGTTTTTTCTTGCCAAACAACATTTTTAGTGGCCA  494
            ||||||||| ||||||| ||||| |||||||||||||| |||||||||||||| ||||||
Sbjct  315  CGGCTTTGGAGATCGTAATCTCTCGCGTTTTTTCTTGCGAAACAACATTTTTAATGGCCA  374

Query  495  GATAATCTTACTTGTTTTATCGGATGGTTACGTTGTGGGATTTCATGAACTATGACAGGG  554
            || ||| || |||||||||||||||||||| |||||||||||||||||| || || || |
Sbjct  375  GAAAATATTCCTTGTTTTATCGGATGGTTATGTTGTGGGATTTCATGAATTAGGAGAGTG  434

Query  555  GATTTTTATGAACAGA----GAGAGGTGTGATCTACGTGTACGGCACGTGCTT-ACCCCA  609
            |||||| ||||| |||    ||||||| || |||||||| ||||||||||||| ||| ||
Sbjct  435  GATTTT-ATGAATAGATCTAGAGAGGTATGGTCTACGTGCACGGCACGTGCTTTACCTCA  493

Query  610  TGCGTAACGATGCAACTGAGTGTTGAGCTCTACGTTACCTCAATGCCTCT  659
            ||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct  494  TGCGTAACGATGCAAGTGACTGTTGAGCTCTACGTTACCTCAATGCCTCT  543



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33455941902


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5