BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487597
Length=719
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07600.1 | Symbols: | Oleosin family protein | chr5:2404574... 800 0.0
AT5G07510.1 | Symbols: GRP14, ATGRP14, GRP-4, ATGRP-4 | glycine... 278 7e-74
> AT5G07600.1 | Symbols: | Oleosin family protein | chr5:2404574-2405521
REVERSE LENGTH=811
Length=811
Score = 800 bits (433), Expect = 0.0
Identities = 570/632 (90%), Gaps = 26/632 (4%)
Strand=Plus/Plus
Query 2 TCAGTCATCGAAATTTAACATTTATCACAAAATGTTTTCTTTTCTCATTC-TGTTGTTGG 60
|||||||| ||||||||||||||||||||| |||||||||||||| | || | |||||||
Sbjct 10 TCAGTCATAGAAATTTAACATTTATCACAACATGTTTTCTTTTCTTA-TCTTCTTGTTGG 68
Query 61 AGGTTTATAAGGTGGTTATCGCTGTCGTGGCCTCTATAGTCTTCTTCGTGTTCTCGGGTC 120
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 AGGTTTATAAGGTTGTTATCGCTGTCGTGGCCTCTATAGTCTTCTTCGTGTTCTCGGGTC 128
Query 121 TAACACTCGCTGG-ATCAGCCGT-GGCATTAACCGTAACCACACCGCTTTTCATCATATT 178
||||||||||||| | ||||||| || |||||||||||||||||||||||||||||||||
Sbjct 129 TAACACTCGCTGGTA-CAGCCGTCGG-ATTAACCGTAACCACACCGCTTTTCATCATATT 186
Query 179 TAGTCCGATTCTCGTACCAGCCACGATAGCCACTGCTCTCTTAACCACAGGGTTTACGGC 238
|| |||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
Sbjct 187 CAGCCCGATTCTCGTACCAGCCACGATAGCCATTACTCTCTTAACCACAGGGTTTACGAC 246
Query 239 CGGTGGCGCCCTTGGAGCTACGGCCATTGCTCTCATTAGGCGAAGCATGGGAGTTAAGTC 298
|||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||
Sbjct 247 CGGTGGCGCCCTTGGAGCTACGGCCATTGCTCTCATCAGGCGCGGCATGGGAGTAAAGTC 306
Query 299 GAAGAACAATATACCTGCAACAGGAGCTCCACCAACTATGTTTGACCAAACTCCGTTCAA 358
|||||||||||||||||||| ||||||||||||||||||||||| ||| |||||
Sbjct 307 GAAGAACAATATACCTGCAATAGGAGCTCCACCAACTATGTTTGCCCA------GTTCAG 360
Query 359 TTTAACGCCAAAGATTAATTATGAAGGAACTTTTAAAGGATCTTGGGGAGGAACATCATC 418
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||
Sbjct 361 TTTAACGCCAAAGATTAATTATGAAGGAACTTTTAAAGGGTCTTGGGGAGGAAAATCGTC 420
Query 419 ACCCCAAGCTGCGCCAAATTTTAGTTATGGAGGAACTTGGACAGCAACTTGGGGAGGAAG 478
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 ACCCCAAGCTACGCCAAATTTTAGTTATGGAGGAACTTGGACAGCAAATTGGGGAGGAAG 480
Query 479 ATCGTTTACTGGAAAGTTTGGAGATCAATCGGGCGG--------C-G--G-TGGAAGTAC 526
||| ||||||||||||||||||||||| || ||||| | | | |||||||||
Sbjct 481 ATCCTTTACTGGAAAGTTTGGAGATCAGTCTGGCGGTGGAAGTACCGCAGGTGGAAGTAC 540
Query 527 ACCCGAAgctgctggtgctggtgcaggtgcaggtgctgctggtgctggtgctggtgcagg 586
|||||||||||||||||||||||| ||||| | |||||||||||||||||||| ||| |
Sbjct 541 ACCCGAAGCTGCTGGTGCTGGTGCTGGTGCTGCTGCTGCTGGTGCTGGTGCTGCTGCTGC 600
Query 587 tgcaggtgctggtgc-gcctggtggtgctggt 617
||| ||||||| ||| || || || | |||||
Sbjct 601 TGCGGGTGCTGCTGCTGC-TGCTGTTCCTGGT 631
> AT5G07510.1 | Symbols: GRP14, ATGRP14, GRP-4, ATGRP-4 | glycine-rich
protein 14 | chr5:2377710-2378829 REVERSE LENGTH=796
Length=796
Score = 278 bits (150), Expect = 7e-74
Identities = 223/258 (86%), Gaps = 5/258 (2%)
Strand=Plus/Plus
Query 1 CTCAGTCATCGAAATTTAACATTTATCACAAAATGTTTTCTTTTCTCAT--T-C-TGTTG 56
||||||||| |||||||||||| |||| ||||||||||||||||||||| | | | ||
Sbjct 35 CTCAGTCATTGAAATTTAACATCTATCCCAAAATGTTTTCTTTTCTCATCCTCCAAG-TG 93
Query 57 TTGGAGGTTTATAAGGTGGTTATCGCTGTCGTGGCCTCTATAGTCTTCTTCGTGTTCTCG 116
| |||||||| | |||||||||| |||| ||||| ||||||||||||||| ||||| ||
Sbjct 94 TCGGAGGTTTTTCAGGTGGTTATTGCTGCCGTGGTCTCTATAGTCTTCTTAGTGTTAGCG 153
Query 117 GGTCTAACACTCGCTGGATCAGCCGTGGCATTAACCGTAACCACACCGCTTTTCATCATA 176
||||||||||| || || |||||| |||||||||| |||||||||||||||| ||||||
Sbjct 154 GGTCTAACACTGGCAGGTTCAGCCACGGCATTAACCATAACCACACCGCTTTTTATCATA 213
Query 177 TTTAGTCCGATTCTCGTACCAGCCACGATAGCCACTGCTCTCTTAACCACAGGGTTTACG 236
|| |||||||||||||||||||||||||||||||||||| || |||||||||| | ||
Sbjct 214 TTCAGTCCGATTCTCGTACCAGCCACGATAGCCACTGCTGTCATAACCACAGGACTCACC 273
Query 237 GCCGGTGGCGCCCTTGGA 254
|| |||||||| || |||
Sbjct 274 GCTGGTGGCGCACTCGGA 291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34862498018
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5