BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487599
Length=1089
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07620.1 | Symbols: | Protein kinase superfamily protein | ... 1703 0.0
AT5G61570.1 | Symbols: | Protein kinase superfamily protein | ... 577 9e-164
> AT5G07620.1 | Symbols: | Protein kinase superfamily protein
| chr5:2407401-2409066 REVERSE LENGTH=1080
Length=1080
Score = 1703 bits (922), Expect = 0.0
Identities = 1037/1091 (95%), Gaps = 13/1091 (1%)
Strand=Plus/Plus
Query 1 ATGAGAAAAACTCAACTTATAACAATGTTACTTGGAGTATCTTTATCAGCATTCTTGATA 60
||||||||| ||| |||| ||||| ||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGAGAAAATCTCTACTTCTAACATTGTTACTAGGAGTATCTTTATCAGCATTCTTGATA 60
Query 61 GTAATCTTCTTCATTGTCTTCTTCATCTGCTTTAGAAGAAAAGAATCATCATCTATTGAC 120
||||||||| | || || || | || | |||||||||||||||||||||||| |||
Sbjct 61 GTAATCTTC-T--TTATCATC-T--TC--C-TTAGAAGAAAAGAATCATCATCTACTGAA 111
Query 121 TCAGATCAATACGACGTCGAATCACTCGACCACAACAAACAAGGATTCTCTTCGGAAACA 180
|||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct 112 TCAGATCAATACGACGTCGAATCACTAGACCACAACAAACAAGGCTTCTCCTCGGAAACA 171
Query 181 GAGGAACTCGT-ATCCTTTCAAGGCGGAGAAGATCTCACGATCTGCGATATCCTCGATGC 239
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 172 GAGGAACTCGTAAT-CTTTCAAGGCGGAGAAGATCTCACGATCTGCGATATCCTCGATGC 230
Query 240 TCCCGGAGAAGTCATCGGAAAATCAAGCTACGGTACTTTGTACAAAGCGTCTTTGCAACG 299
|||||||||||||||||||||||||||||| |||||| | |||||||||||||| ||| |
Sbjct 231 TCCCGGAGAAGTCATCGGAAAATCAAGCTATGGTACTCTATACAAAGCGTCTTTACAAAG 290
Query 300 AAGCGGCAAGATTAGGGTTCTTAGATTTCTTAGACCGGTGTGTACAGTGAGATCGGATTC 359
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 291 AAGCGGCAAGATTAGGGTTCTTAGGTTTCTTAGACCGGTGTGTACAGTGAGATCGGATTC 350
Query 360 TAAAGAGTTTAATGGCATCATCGAGACACTTGGGTTTGTTCGACATGAGAACTTGGTTCC 419
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 351 TAAAGAGTTTAATGGCATCATCGAAACACTTGGGTTTGTTCGACATGAGAATTTGGTTCC 410
Query 420 TCTGTTAGGTTTCTACGCTGGAAACAGAGGAGAGAAGCTTATGGTTCATCCTTTCTTCGG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TCTGTTAGGTTTCTACGCTGGAAACAGAGGAGAGAAGCTTATGGTTCATCCTTTCTTCGG 470
Query 480 TTCCGGGAATCTTTCCGACTTCATCAGAAGTGGAGATTATGAATCAAGAAAATGGATTAA 539
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 471 TTCCGGGAATCTTTCCGACTTCATCAGAAGTGGAGATGATGAATCAAGAAAATGGATCAA 530
Query 540 TATTTTAAGAATCACAATTGGAATATCTACAGCTCTTGATTATCTCCACACAGGAATGCA 599
||||||||||||||||||||||||||| | ||| |||||| |||| || |||||||||||
Sbjct 531 TATTTTAAGAATCACAATTGGAATATCGAAAGCCCTTGATCATCTTCATACAGGAATGCA 590
Query 600 GAAACCAATCGTCCATGGCAATCTGAAGTCCAAGAACGTTCTTCTGAGTTCGAGTTTCGA 659
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 591 AAAACCAATCGTCCATGGCAATCTGAAGTCCAAGAACGTTCTTCTCAGTTCGAGTTTCGA 650
Query 660 ACCTCGAATCTCTGATTTCGGTTTGCATTTGCTCTTGAACCTAG-CTGCAGGACAAGAGA 718
|||| ||||||||||||||||||| ||||||||||||||||| | |||||||||||||||
Sbjct 651 ACCTAGAATCTCTGATTTCGGTTTACATTTGCTCTTGAACCT-GTCTGCAGGACAAGAGA 709
Query 719 TTCTTGATGTTTCTGCAGCTGAGGGATACAAAGCTCCTGAGTTAATAAAGATGAAGGAAG 778
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 710 TTCTTGATGTTTCTGCAGCTGAGGGATACAAAGCTCCTGAGTTAATAAAGATGAAGGACG 769
Query 779 TGAGCAAAGAGAGTGATGTGTATAGTCTTGGTGTGATCATGCTTGAGCTAGTCTCTGGGA 838
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 770 TGAGCAAAGAGAGTGATGTGTATAGTCTTGGTGTGATCATGCTTGAGCTAGTCTCTGGTA 829
Query 839 AAGAACCGATAAACGAGAATCCAACGGGTGATGATGAGTTCTATCTTCCTGATTTTATGA 898
|||||||||||||||||||| |||| || |||||||||||||||||||||||||||||||
Sbjct 830 AAGAACCGATAAACGAGAATGCAACTGGCGATGATGAGTTCTATCTTCCTGATTTTATGA 889
Query 899 GGAATGCTGTTCTTGATCATAGGTTGTCTGATTTATACCGTCCTGAGATTATCAGAAGTG 958
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 890 GGAATGCTGTTCTTGATCATAGGTTGTCTGATTTATACCGTCCTGAGATTCTCGGAAGTG 949
Query 959 ATGATCATCTGAGTGAAGAATGTGTCCTCAAGTATTTTCAGCTTGCAATGTCTTGTTGCT 1018
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 ATGATAATCTAAGTGAAGAATGTGTCCTCAAGTATTTTCAGCTTGCAATGTCTTGTTGCT 1009
Query 1019 CTCCTTCGCCTTCTCTTAGGCCAAACGTCAAACAAGTCTTGAGGAAACTTGAAGAGATTG 1078
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1010 CTCCTTCGCCTTCTCTTAGGCCAAACGTCAAACAAGTCTTGAGGAAACTTGAAGAGATTG 1069
Query 1079 GGAAATTTTAG 1089
|||||||||||
Sbjct 1070 GGAAATTTTAG 1080
> AT5G61570.1 | Symbols: | Protein kinase superfamily protein
| chr5:24758347-24760652 FORWARD LENGTH=1697
Length=1697
Score = 577 bits (312), Expect = 9e-164
Identities = 589/718 (82%), Gaps = 37/718 (5%)
Strand=Plus/Plus
Query 175 GAAACAGAGGA--ACTCGTATCCT-TTCAA-GGCGGAGAAGATCTCACGATCTGCGATAT 230
||||||||||| | | |||| | ||||| || ||||||||||| ||||||||||||||
Sbjct 341 GAAACAGAGGAGGA-GCTTATCATCTTCAACGGTGGAGAAGATCTAACGATCTGCGATAT 399
Query 231 CCTCGATGCTCCCGGAGAAGTCATCGGAAAATCAAGCTACGGTACTTTGTACAAAGCGTC 290
||||||||||| |||||||||||||||||||||||||||||||| || ||||||||| |
Sbjct 400 ACTCGATGCTCCAGGAGAAGTCATCGGAAAATCAAGCTACGGTACATTATACAAAGCGAC 459
Query 291 TTTGCAACGAAGCGGCAA-GATTAGGGTTCTTAGATTTCTTAGACCGGTGTGTACAGTGA 349
|| ||| |||| || || | |||| |||||||| || ||| |||| | ||| | ||||
Sbjct 460 GTTACAAAGAAGTGGGAAAG-TTAGAGTTCTTAGGTTCCTTCGACCTTTATGTGCTGTGA 518
Query 350 GAT-CGGATTCTAAAGAGTTTAATGGCATCATCGAGACACTTGGGTTTGTTCGACATGAG 408
|| | |||||||| |||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct 519 -ATTCAGATTCTAAGGAGTTTAATGGCGTCATTGAGTCACTTGGGTTTGTTCGACATGAT 577
Query 409 AA-CTTGGTTCCTCTGTTAGG-TTTCTACGCTGGAAACAGAGGAGAGAAGCTTATGGTTC 466
|| || | ||||||||||||| ||| |||| ||| ||||||||||||||||||||| |||
Sbjct 578 AATCTCG-TTCCTCTGTTAGGGTTT-TACGTTGGCAACAGAGGAGAGAAGCTTATGATTC 635
Query 467 ATCCTTTCTTCGGT--T-CCGGGAATCTTTCCGAC-TTCATCAGA--------AG-TGGA 513
|||| ||||||||| | ||||||||||||| | | ||||||| | || ||||
Sbjct 636 ATCCCTTCTTCGGTAGTTCCGGGAATCTTTCTG-CGTTCATCAAATTTTTGGCAGGTGGA 694
Query 514 GAT-TATGAATCA-AGAAAATGGATTAATATTTTAAGAATCACAATTGGAATATCTACAG 571
||| | ||| || | ||| |||| || ||||| || ||||| ||||||||| | | ||
Sbjct 695 GATGT-TGACGCACACAAA-TGGAGCAACATTTTGAGTATCACCATTGGAATAGCAAAAG 752
Query 572 CTCTTGATTATCTCCACACAGGAATGCAGAAACCAATCGTCCATGGCAATCTGAAGTCCA 631
|||||||| ||||||| ||||||||||||||||| || || || || ||||||||||| |
Sbjct 753 CTCTTGATCATCTCCATACAGGAATGCAGAAACCGATTGTTCACGGAAATCTGAAGTCGA 812
Query 632 AGAACGTTCTTCT-GAGTTCGAGTTTC-GAACCTCGAATCTCTGATTTCGGTTTGCATTT 689
| || ||||| || || |||||| | ||| || ||||||||||||| ||||||||
Sbjct 813 AAAATGTTCTACTAGACAA-GAGTTTTAGG-CCTAGAGTCTCTGATTTCGGCTTGCATTT 870
Query 690 GCTCTTGAACCTAGCTGCAGGACAAGAGATTCTTGATGTTTCTGCAGCTGAGGGATACAA 749
||| |||||||| || || || |||||| |||| || | ||| || || ||||| |||||
Sbjct 871 GCTTTTGAACCTTGCAGCTGGGCAAGAGGTTCTAGAAGCTTCAGCTGCAGAGGGTTACAA 930
Query 750 AGCTCCTGAGTTAATAAAGATGAAGGAAGTGAGCAAAGAGAGTGATGTGTATAGTCTT-G 808
||| |||||||| || |||||||||||||| ||||| ||||||||||| |||||| || |
Sbjct 931 AGCGCCTGAGTTGATCAAGATGAAGGAAGTAAGCAAGGAGAGTGATGTATATAGT-TTCG 989
Query 809 GTGTGATCATGCTTGAGCTAGTCTCTGGGAAAGAACCGATAAACGAGAATCCAACGGG 866
||||||||||||||||| |||||||||| ||||| |||| |||| |||||||||||||
Sbjct 990 GTGTGATCATGCTTGAGTTAGTCTCTGGTAAAGAGCCGACAAACAAGAATCCAACGGG 1047
Score = 141 bits (76), Expect = 1e-32
Identities = 158/195 (81%), Gaps = 15/195 (8%)
Strand=Plus/Plus
Query 905 CTGTTCTTGATC---ATAGGTTGTCTGATTTATACCGTCCTGAGATTATCA-GA-A-G-- 956
|||| ||||||| |||||||||| ||||| ||||||||||||||||| | || | |
Sbjct 1050 CTGTACTTGATCGTAATAGGTTGTCGGATTTGTACCGTCCTGAGATTATTAGGAGATGTC 1109
Query 957 T----GAT-G--ATCATCTGAGTGAAGAATGTGTCCTCAAGTATTTTCAGCTTGCAATGT 1009
| ||| | || | ||| ||||| ||||||||| |||| ||||||||||||||||
Sbjct 1110 TGAAGGATGGAAATGGTGTGACCGAAGAGTGTGTCCTCGAGTACTTTCAGCTTGCAATGT 1169
Query 1010 CTTGTTGCTCTCCTTCGCCTTCTCTTAGGCCAAACGTCAAACAAGTCTTGAGGAAACTTG 1069
||||||||||||| |||||| |||||||||| | | |||| ||||| |||||||| ||||
Sbjct 1170 CTTGTTGCTCTCCATCGCCTACTCTTAGGCCGAGCTTCAAGCAAGTATTGAGGAAGCTTG 1229
Query 1070 AAGAGATTGGGAAAT 1084
||||||| ||||||
Sbjct 1230 AAGAGATCAGGAAAT 1244
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53363179335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5