BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487601
Length=3192
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07660.1 | Symbols: SMC6A | structural maintenance of chromo... 4878 0.0
AT5G61460.1 | Symbols: MIM, ATRAD18, SMC6B | P-loop containing ... 2453 0.0
> AT5G07660.1 | Symbols: SMC6A | structural maintenance of chromosomes
6A | chr5:2422839-2429912 FORWARD LENGTH=3177
Length=3177
Score = 4878 bits (2641), Expect = 0.0
Identities = 3034/3215 (94%), Gaps = 61/3215 (2%)
Strand=Plus/Plus
Query 1 ATGGATGAACATGGC-A--ATCAACAGAGTAATCCCTTCAACGATCAACGACCTAGCTCC 57
||||||||||||||| | ||| |||||||||||| ||||||||||||| | |||||||
Sbjct 1 ATGGATGAACATGGCGACCATCGACAGAGTAATCCTTTCAACGATCAACAAACTAGCTCG 60
Query 58 GGTACGATCGTTAGGATTCGCCTTGAGAATTTCATGTGCCACAGTAATCTCGAGATTGAG 117
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GGTAAAATCCTTAGGATTCGCCTTGAGAATTTCATGTGCCACAGTAATCTCGAGATTGAG 120
Query 118 TTTGGCGATTGGGTCAATTTCATCACTGGCCAAAACGGAAGTGGTAAGAGTGCGATTTTG 177
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 121 TTTGGCGATTGGGTCAATTTCATCACTGGTCAAAACGGAAGTGGTAAGAGTGCGATATTG 180
Query 178 ACTGCTCTATGTGTTGCCTTTGGATGTCGAGCCAGGGGAACTCAGCGCGCCGCTACGCTA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 ACTGCTCTATGTGTTGCCTTTGGATGTCGAGCCAGGGGAACTCAGCGCGCCGCTACGTTG 240
Query 238 AAAGATTTCATTAAAAATGGATGCAGTTATGCCCTTGTTCATGTCGAACTGAAAAACCAA 297
|||||||||||||||| ||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 241 AAAGATTTCATTAAAACTGGATGCAGCTATGCCCTTGTTTATGTCGAACTGAAAAACCAA 300
Query 298 GGAGAGGATGCTTTTAAGCCTGAAATATATGGTGATACTCTGATTATTGAACGCAGGATA 357
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAGAGGATGCTTTCAAGCCTGAAATATATGGTGATACTCTGATTATTGAACGCAGGATC 360
Query 358 TCTGATTCTACTAGTTTAACGGTTCTCAAGGATCATCAAGGAAGAAAAATATCTAGCCG- 416
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTGATTCCACTAGTTTAACGGTTCTCAAGGATCATCAAGGAAGAAAAATATCTAGCCGA 420
Query 417 AAGAGAGGAGCTACGGCAACTTGTTGAACATTATAATATTGATGTTGAGAATCCCTGTGT 476
||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAG-GAGGAGCTACGGGAACTAGTTGAACATTATAATATTGATGTTGAGAATCCCTGTGT 479
Query 477 GATAATGAGTCAAGACAAGAGCAGGGAGTTCTTACATTCTGGAAACGACAAAGACAAATT 536
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 480 GATAATGAGTCAAGACAAGAGCAGGGAGTTCTTACATTCTGGTAACGACAAAGATAAATT 539
Query 537 CAAGTTCTTTTATAAAGCAACCCTTCTCCAGCAAGTCGATGATCTTCTTCAAAGTATTGG 596
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 540 CAAGTTCTTTTATAAAGCAACCCTTCTTCAGCAAGTCGATGATATTCTTCAAAGTATTGG 599
Query 597 CACTAAGTTGAAATCTGCAAATGCTCTTATGGATGAGATGGAGAAGACCATAAAACCAAT 656
|| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 600 TACAAAGTTGAATTCTGCAAATGCTCTTTTGGATGAGATGGAGAAGACCATAAAACCAAT 659
Query 657 ACAAAAGGAGATCAGTGAATTGCTTGAAAAGATAAAGAATATGGAACATGTTGAAGAAAT 716
| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AGAAAAGGAGATCAATGAGTTGCTTGAAAAGATAAAGAATATGGAACATGTTGAAGAAAT 719
Query 717 AACTCAACAGGTTCTGCATTTGAAAAATAAACTAGCTTGGTCATGGGTATATGATGTGAA 776
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 720 AACTCAACAGGTTCTGCATTTGAAAAAGAAACTAGCTTGGTCATGGGTATATGATGTGGA 779
Query 777 TAGGCAGCTCATGGAGCAGAATGAGAAGATCGTGAAACTCAGAGAACGAGTGCCTACTTG 836
||||||||||| ||||||||||||||||||||||||| ||| |||||||||||| |||||
Sbjct 780 TAGGCAGCTCAAGGAGCAGAATGAGAAGATCGTGAAATTCAAAGAACGAGTGCCAACTTG 839
Query 837 TCAAAATAAAATTGATCGGAAACTGGGTGAGGTGGAGTCTTTAAGGGTAAGCTTGACCGA 896
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 840 TCAAAATAAAATTGATCGGAAACTGGGTGAGGTGGAATCTTTAAGGGTAAGCTTAACCGA 899
Query 897 GAAGAAAGCTCAAGTTGCCTGCCTGATAGATGAATCAACTGCGATGAAGAGAGAGCTAGA 956
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct 900 GAAGAAAGCTCAAGTTGCCTGCTTGATAGATGAGTCAACTGCGATGAAGAGAGAGCTAGA 959
Query 957 GTGTTTGCGGCAATCAATGAAGAAGGCTGCTAGAGAGAAGATTGCTTTAGAAGAAGAATA 1016
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 960 GTGTTTGCGGCAATCAATGAAGAAGGCTGCAAGAGAGAAGATTGCTTTAGAAGAAGAATA 1019
Query 1017 CCATCATAAGTGCAATAACATTCAGAAGATTAAGGATCGTGTTAGGAGGCTTGAACGACA 1076
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CCATCATAAGTGCAGTAACATTCAGAAGATTAAGGATCGTGTTAGGAGGCTTGAACGACA 1079
Query 1077 GATTGGAGATATTAATGAAATGACTATAAGAAGCACACAGGTTGAACAATCTGAAATCGA 1136
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1080 GATTGAAGATATTAATGAAATGACTATAAGAAGCACACAGGTCGAACAATCTGAAATCGA 1139
Query 1137 AGAAAAACTGAAGCAATTGAT-GCTAGAGGTTGAGAAGGCTGAATCATTGCTTTCTAGTT 1195
|| ||||||||| ||||||| | |||||||||||||||||||||||||| |||| ||||
Sbjct 1140 AGGAAAACTGAACCAATTGACAG-TAGAGGTTGAGAAGGCTGAATCATTGGTTTCCAGTT 1198
Query 1196 TGAAAGAGGAGGAGAACATGATAATAGAAAAAGCATCAGCCGGAGGGAAGGAGAAGGAAC 1255
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1199 TGAAAGAGGAGGAGAACATGGTAATGGAAAAAGCATCAGCCGGAGGGAAGGAGAAGGAAC 1258
Query 1256 ACATAGAGCATATGATTAGAGACCATGAAAAGAAGCAAAGAAACATAAACGCGCACATCA 1315
|||||||| | ||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1259 ACATAGAGGAGATGATTAGAGACCATGAAAAGAAACAAAGAAACATGAACGCGCACATCA 1318
Query 1316 ATGATCTGAAGAAACATCAAACAAATAAGGTTACCGCATTTGGAGGGGACAGAGTCATTA 1375
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1319 ATGATCTGAAGAAACATCAAACAAATAAGGTTACCGCATTTGGAGGGGACAAAGTCATTA 1378
Query 1376 ATCTTTTGCGAGCGATTGAGAGACATCACCGCAGATTTAAAATGCCACCGATTGGTCCGA 1435
||||||| ||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 1379 ATCTTTTACGAGCGATTGAGAGACATCACCGCAGATTTAAAATGCCACC-A--------A 1429
Query 1436 TTGGTCCGATTGGTGCTCATGTGACATTGGTCAATGGTAATAGATGGGCTTCTGCAGTTG 1495
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1430 TTGGTCCGATTGGTGCTCATGTGACATTGATCAATGGTAATAGATGGGCTTCTGCAGTTG 1489
Query 1496 AACAAGCTCTTGGCAACCTCCTGAATGCCTTTATTGTGAACGATCACAAAGATTTAGTTA 1555
|||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||
Sbjct 1490 AACAAGCTCTTGGCAACCTCCTGAATGCCTTTATAGTGACCGATCATAAAGATTTAGTTG 1549
Query 1556 CTTTGCGAGACTGTGGAAAGGAAGCAAATTATAACAATCTAAAGATTATCATCTATGACT 1615
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1550 CTTTGCGAGACTGTGGAAAGGAAGCAAAATATAACAATCTAAAGATTATCATCTATGACT 1609
Query 1616 TTTCAAGACCAAGGTTA-ACTATACCAAGGCACATGATTCCTCAAACAGAACACCCAACT 1674
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 TTTCAAGACCAAGGTTAGA-TATACCAAGGCACATGATTCCTCAAACAGAACACCCAACT 1668
Query 1675 ATTCTCTCTGTCTTGCACTCAGAGAATACTACTGTTCTTAACGTCTTGGTGGATGTGAGT 1734
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1669 ATTCTCTCTGTCTTGCACTCTGAGAATACTACTGTTCTTAACGTCTTGGTGGATGTGAGT 1728
Query 1735 GGTGTAGAGCGGCGA-GTGCTTGCAGAGAATTATGAAGTTGGCAAGACCATTGCCTTTGA 1793
| |||||| ||| | ||||||||||| |||||||| |||||||||| |||||||||||
Sbjct 1729 TGCGTAGAGAGGC-ATGTGCTTGCAGAAAATTATGAGGTTGGCAAGATTATTGCCTTTGA 1787
Query 1794 GAGAAGGCTTTCGCATCTGAATGATGTTTTCACTATAGATGGATACCGAATGTTTTCCCG 1853
||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1788 GAGAAGGCTCTCACATCTGAAGGATGTTTTCACTATAGATGGATACCGAATGTTTTCCCG 1847
Query 1854 TGGGCCTGTTCAGACAACCCTTCCTCCCCGTTCC-CGGAGACCTACTCGATTGTGTGCTT 1912
||||||||||||||||||||||||||||||| || || ||||||||| ||||||||||||
Sbjct 1848 TGGGCCTGTTCAGACAACCCTTCCTCCCCGT-CCTCGAAGACCTACTAGATTGTGTGCTT 1906
Query 1913 CTTTTGATGACCAAATCAAGGATCTTGAAATAGAGGCCTCAAAAGAACAAAGTGAGATAC 1972
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1907 CTTTTGATGACCAAATCAAGGATCTTGAAATAGAGGCCTCAAGAGAACAAAGTGAGATAC 1966
Query 1973 AGGAATGCAGGGGACAAAAGAGGGAGGCAGAAATGAATCTCGAGGGTCTTGAATCAACAA 2032
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1967 AGGAATGTAGGGGACAAAAGAGGGAGGCAGAAATGAATCTCGAGGGTCTTGAATCAACAA 2026
Query 2033 TGCGTAGACTGAAGAAGCAACACACCCAACTAGAGAAAGATTTGACAAGGAAGGAAATTG 2092
|||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 2027 TGCGCAGACTGAAGAAGCAACGCACCCAACTAGAGAAAGATTTGACAAGGAAGGAACTTG 2086
Query 2093 AAATGCAGGATCTGAAAAATTCAGTCGCTTCTGAAACCAAAGTATCACCTACTTCAAGTG 2152
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 2087 AAATGCAGGATCTGAAAAATTCAGTCGCTTCTGAAACCAAAGCATCACCTACATCAAGTG 2146
Query 2153 TTAATGAGCTTCATCTAGATATCATGAAATTCCAAGAAGAGATAGAGGAGAAAGAATCCT 2212
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 2147 TTAATGAGCTTCATCTAGAAATCATGAAATTCCAAAAAGAGATAGAGGAGAAAGAATCCT 2206
Query 2213 TGCTAGAAAAACTTCAAGACTCCTTGAAGGAAGCTGAAATAAAGGCTAATGAACTTAAAG 2272
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct 2207 TGCTAGAAAAACTTCAAGACTCCTTGAAGGAAGCCGAACTAAAGGCTAATGAACTTAAAG 2266
Query 2273 CTTCATATGAAAAATTATATG-G---G----G----AAATTGAAGCCCTTGAGAAAGCTG 2320
||||||||||||| ||||||| | | | ||||||||||||||||||||||||
Sbjct 2267 CTTCATATGAAAACTTATATGAGTCCGCCAAGGGTGAAATTGAAGCCCTTGAGAAAGCTG 2326
Query 2321 AGGATGAGCTAAAGGAGAAAGAAGAAGAACTCCAATCCGCAGAAACGGAGAAGAACCATT 2380
||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||
Sbjct 2327 AGGATGAGCTAAAGGAGAAAGAAGATGAACTCCATTCTGCAGAAACGGAGAAGAACCATT 2386
Query 2381 ATGAGGATATAATGAAGGACAAGGTCTTACCCGAGATTAAACAGGCTGAGGCTAAATATG 2440
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 2387 ATGAGGATATAATGAAGGACAAGGTCTTACCCGAGATTAAACAGGCTGAGACTATATATA 2446
Query 2441 AGGAACTTAAAACGAAGCGGCAGGAAAGTAACGAGAAGGCCTCCATAATTTGTCCTGAGA 2500
|||| ||| ||| ||| ||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 2447 AGGAGCTTGAAATGAAACGGCAGGAAAGCAACAAGAAGGCCTCCATAATTTGTCCTGAGA 2506
Query 2501 GT-ACGATAAGAGCTTTGGGTCCTTGGGATGGGGCCA-CTCCTTTGCAGCTTAGTGCTCA 2558
|| | ||||| |||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 2507 GTGA-GATAAAAGCTTTGGGTCCTTGGGATGGG-CCAACTCCTTTGCAGCTTAGTGCTCA 2564
Query 2559 GATTAACAAAATAAATCATAGACTGAAGCGAGAGAATGAGAAGTGCTTAAGTTTCTGTGC 2618
||||||||||||||||||||| |||||||||||||||||||| | | | || |||
Sbjct 2565 GATTAACAAAATAAATCATAGGCTGAAGCGAGAGAATGAGAA-T--T-A--TT-CTG--- 2614
Query 2619 CTTGTATTCTGAATCAATCGATGACCTCAGGATTATGCACGAGGAAAAAGAACAGAAGAT 2678
| | |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2615 -----A-----A-TCAATCGATGACCTCAGGATTATGCACGGGGAAAAAGAACAGAAGAT 2663
Query 2679 TGGGAAGAAACGCAAAACTTACAAAAGCTTTCGAGAAAAACTCAAGGTCTGCAAAGATGC 2738
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2664 TGGGAAGAAACGCAAAACTTACAAAAGCTGTCGAGAAAAACTCAAGGTCTGCAAAGATGC 2723
Query 2739 AGTAGACTCACGGTGGAACAAGCTCCAAAGAAATAAAGATCTTCTGAAGCCCCAATTAAC 2798
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2724 AGTAGACTCACGGTGGAACAAGCTCCAAAGAAATAAAGATCTTCTGAAGCGAGAATTAAC 2783
Query 2799 TTGGCAATTTAACTC-TCATTTAGGAAAGAAAGGTATCAGTGGAAATATCAGAGTCTCTT 2857
||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2784 TTGGCAATTCAAC-CATCATTTAGGAAAGAAAGGTATCAGTGGAAATATCAGAGTCTCTT 2842
Query 2858 ATGAAGACAAAACTTTGTCCATAGAGGTTAAGATGCCTCAAGATGCAACAAACAGTGCTG 2917
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2843 ATGAAGACAAAACTTTGTCCATAGAGGTAAAGATGCCTCAAGATGCAACAAACAGTGCTG 2902
Query 2918 TTCGAGATACTAGAGGGCTTTCAGGTGGGGAACGATCTTTCTCGACTTTATGTTTCGCAT 2977
|||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||| |||
Sbjct 2903 TTCGAGATACTAGAGGACTTTCAGGTGGGGAACGGTCTTTCTCGACTTTATGCTTCACAT 2962
Query 2978 TGGCTCTTCACAATATGACTGAAGCCCCAATTCGAGCAATGGACGAGTTTGATGTGTTTA 3037
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2963 TAGCTCTTCAGAATATGACTGAAGCCCCAATTCGAGCAATGGACGAGTTTGATGTGTTTA 3022
Query 3038 TGGACGCAGTTAGCAGGAAAATCAGCTTAGACACATTGGTTGATTTCGCATTGGAACAAG 3097
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 3023 TGGACGCAGTTAGCAGGAAAATCAGCTTAGACACATTGATTGATTTCGCATTGAAACAAG 3082
Query 3098 GTTCACAGTGGATGTTCATCACTCCTCATGATATAAGTATGGTAAAGTCACACGAGAAGA 3157
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3083 GTTCACAGTGGATGTTCATCACTCCTCATGATATAAGTATGGTGAAGTCACACGAGAAGA 3142
Query 3158 TAAAGAAGCAACAAATGGCTGCTCCTCGTTCTTGA 3192
||||||||||||||||||||||||| |||||||||
Sbjct 3143 TAAAGAAGCAACAAATGGCTGCTCCACGTTCTTGA 3177
> AT5G61460.1 | Symbols: MIM, ATRAD18, SMC6B | P-loop containing
nucleoside triphosphate hydrolases superfamily protein | chr5:24714076-24721940
REVERSE LENGTH=3646
Length=3646
Score = 2453 bits (1328), Expect = 0.0
Identities = 2583/3175 (81%), Gaps = 142/3175 (4%)
Strand=Plus/Plus
Query 80 TTGAGAATTTCATGTGCCACAGTAATCTCGAGATTGAGTTTGGCGATTGGGTCAATTTCA 139
||||||||||||||||||| ||||||||| |||||||||||||||| ||||| |||||||
Sbjct 179 TTGAGAATTTCATGTGCCATAGTAATCTCCAGATTGAGTTTGGCGAGTGGGTTAATTTCA 238
Query 140 TCACTGGCCAAAACGGAAGTGGTAAGAGTGCGATTTTGACTGCTCTATGTGTTGCCTTTG 199
|||| |||||||||||||||||||||||||| || ||||||| ||||||||||| ||||
Sbjct 239 TCACCGGCCAAAACGGAAGTGGTAAGAGTGCAATACTGACTGCACTATGTGTTGCATTTG 298
Query 200 GATGTCGAGCCAG-GGGAACTCAGCGCGCCGCTACGCTAAAAGATTTCATTAAAAATGGA 258
|||||||||| || ||| |||||||| || || || ||||| ||||||||||||| ||||
Sbjct 299 GATGTCGAGCGAGAGGG-ACTCAGCGTGCTGCCACTCTAAAGGATTTCATTAAAACTGGA 357
Query 259 TGCAGTTATGCCCTTGTTCATGTCGAACTGAAAAACCA-AGGAGAGGATGCTTTTAAGCC 317
||||| |||||| |||| || || ||| ||||||| || ||||||||||||||||||||
Sbjct 358 TGCAGCTATGCCGTTGTCCAAGTAGAAATGAAAAA-CAGTGGAGAGGATGCTTTTAAGCC 416
Query 318 TGAAATATATGGTGATACTCTGATTATTGAACGCAGGATATCTGA-T-T-CTACTAGTTT 374
|||||| ||||||| | | ||||| |||||||||||| |||| | | |||| || |
Sbjct 417 TGAAATTTATGGTGGCGTTATAATTATCGAACGCAGGATAACTGAGTCTGCTAC-AG-CT 474
Query 375 AACGGTTCTCAAGGATCATCAAGGAAGAAAAA-TATCTAGCCGAAGAGAGGAGCTACGGC 433
|| |||||||| ||| ||| ||||| ||||| || || | ||| || |||||||||
Sbjct 475 -ACTGTTCTCAAAGATTATCTAGGAA-AAAAAGTAAGTAACAAAAGGGACGAGCTACGGG 532
Query 434 AACTTGTTGAACATTATAATATTGATGTTGAGAATCCCTGTGTGATAATGAGTCAAGACA 493
||||||||||||||| ||||||||||||||| ||||| |||||| |||||||||||||||
Sbjct 533 AACTTGTTGAACATTTTAATATTGATGTTGAAAATCCGTGTGTGGTAATGAGTCAAGACA 592
Query 494 AGAGCAGGGAGTTCTTACATTCTGGAAACGACAAAGACAAATTCAAGTTCTTTTATAAAG 553
| |||||||||||||||||||||||||| |||||||| |||||||||||||||| ||| |
Sbjct 593 AAAGCAGGGAGTTCTTACATTCTGGAAATGACAAAGATAAATTCAAGTTCTTTTTTAAGG 652
Query 554 CAACCCTTCTCCAGCAAGTCGATGATCTTCTTCAAAGTAT-T-GGCACTAAGTTGA-AAT 610
|||||||||| ||||||||| |||||||||| |||||||| | | || | |||| ||
Sbjct 653 CAACCCTTCTTCAGCAAGTCAATGATCTTCTCCAAAGTATCTACGAAC--ACTTGACAA- 709
Query 611 CTGCAAATGCTCTTA-TGGATGAGA-TGGAGAAGACCATAAAACCAATACAAAAGGAGAT 668
|||| |||| || | ||||| | ||||||| || || ||||||||| ||||||||||
Sbjct 710 AAGCAACTGCT-ATAGTCGATGA-ATTGGAGAACACAATTAAACCAATAGAAAAGGAGAT 767
Query 669 CAGTGAATTGCTTGAAAAGATAAAGAATATGGAACATGTTGAAGAAATAACTCAACAGGT 728
|||||| |||| || ||||||||||||||||||||| |||||||||||| ||||| ||||
Sbjct 768 CAGTGAGTTGCGTGGAAAGATAAAGAATATGGAACAAGTTGAAGAAATAGCTCAA-AGGT 826
Query 729 T-CTGCATTTGAAAAATAAACTAGCTTGGTCATGGGTATATGATGTGAATAGGCAGCT-C 786
| | ||| ||||| || ||||| |||||||||||||||||||||||| |||||||||| |
Sbjct 827 TGCAGCAGTTGAAGAAGAAACTGGCTTGGTCATGGGTATATGATGTGGATAGGCAGCTCC 886
Query 787 ATGGAGCAGAATGAGAAGATCGTGAAACTCAGAGAACG-AGTGCCTACTTGTCAAAATAA 845
| ||| |||| ||||||||| ||||| || | |||||| | | || ||||| ||| |||
Sbjct 887 A-GGAACAGACTGAGAAGATTGTGAAGCTTAAAGAACGTA-TACCGACTTGCCAAGCTAA 944
Query 846 AATTGATCGGAAACTGGGTGAGGTGGAGTCTTTAAGGG-TAAGCTTGACCGAGAAGAAAG 904
||| ||| || ||||||| | ||||| || ||||||| || | |||||| |||||||||
Sbjct 945 AATAGATTGGGAACTGGGAAAAGTGGAATCATTAAGGGATACG-TTGACCAAGAAGAAAG 1003
Query 905 CTCAAGTTGCCTGCCTGATAGATGAATCAACTGCGATGAAGAGAGAGCTAGAGTGTTTGC 964
|||||||||| || ||||| |||||||||||||| |||||||||||| ||||| |||| |
Sbjct 1004 CTCAAGTTGCGTGTCTGATGGATGAATCAACTGCAATGAAGAGAGAGATAGAGAGTTTTC 1063
Query 965 GGCAATCAATGAAGAAGGCTGCTA-GAGAGAAGATTGCTTTAGAAGAAGAATACCATCAT 1023
|||||| |||| ||||| || |||| || |||||| || ||||||||| | |||||
Sbjct 1064 ACCAATCAGCCAAGACGGCTG-TACGAGAAAAAATTGCTCTACAAGAAGAATTCAATCAT 1122
Query 1024 AAGTGCAATAACATTCAGAAGATTAAGGATCGTGTTAGGAGGCTTGAACGAC-AGATTGG 1082
||||||||| | |||| |||||||||||||||||||| ||||||||||| | || ||||
Sbjct 1123 AAGTGCAATTATGTTCAAAAGATTAAGGATCGTGTTAGAAGGCTTGAACGGCAAG-TTGG 1181
Query 1083 AGATATTAATGAA-ATGACTAT-AAGAAGCACACAGGTTGAACAATCTGAAATCGAAGAA 1140
|||||| |||||| | ||| || ||||| |||||||| |||||||||||||||||| ||
Sbjct 1182 AGATATCAATGAACA-GACAATGAAGAA-CACACAGGCTGAACAATCTGAAATCGAGGAG 1239
Query 1141 AAACTGAAGCAATT-GATGCTA-GAGGTTGAGAAGGCTGAATCATTGCTTTCTAGTTTGA 1198
||||| || | || || || | ||||||||||| | |||| |||||| ||| || ||||
Sbjct 1240 AAACTAAAATATTTGGA-GC-AGGAGGTTGAGAAAGTTGAAACATTGCGTTCCAGATTGA 1297
Query 1199 AAGAGGAGGAGAACATG-ATAATAGAAAAAGCATCAG-CCGGAGGGAAGGAGAAGGAACA 1256
||||||| |||||| || | | |||||||| | | ||| |||| ||| ||||||
Sbjct 1298 AAGAGGAAGAGAAC-TGCTTCTTGGAAAAAGCGTTTGAAGGGA-GGAAAAAGATGGAACA 1355
Query 1257 CATAGAGCATATGATTAGAGACCATGAAAAGAAGCAAAGAAACATAAACGCGCACATCAA 1316
||| ||| ||||||||| | ||||| |||||| ||||||| ||||| | || |||| ||
Sbjct 1356 CATCGAGGATATGATTAAAAACCATCAAAAGAGGCAAAGATTCATAACCTCGAACATTAA 1415
Query 1317 TGATCTGAAGAAACATCAAACAAATAAGGTTACCGCATTTGGAGGGGACAGAGTCATTAA 1376
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1416 TGATCTGAAGAAACATCAAACAAATAAGGTTACTGCATTTGGAGGGGACAGAGTCATTAA 1475
Query 1377 TCTTTTGCGAG-CGATTGAGAGACATCACCGCAGATTTA-AAATGCCACCGATTGGTCCG 1434
|||| ||| || | ||||||||| |||| || ||||||| ||| ||||| ||||||||
Sbjct 1476 TCTTCTGC-AGGCTATTGAGAGAAATCATCGTAGATTTAGAAAA-CCACCAATTGGTCCT 1533
Query 1435 ATTGGTCCGATTGGTGCTCATGTGACATTGGTCAATGGTAATAGATGGGCTTCTGCAGTT 1494
||||| | | | |||||||| || |||||||| |||| |||||||||| |||||
Sbjct 1534 ATTGG-C---TC----C-CATGTGACTTTAGTCAATGGCAATAAATGGGCTTCTTCAGTT 1584
Query 1495 GAACAAGCTCTTGGCAACC-TCCTGAATGCCTTTATTGTGAAC-GATCACAAAGATT-TA 1551
|||||||||||||| |||| | | |||||||| ||||||| | ||||||||||||| |
Sbjct 1585 GAACAAGCTCTTGG-AACCCTATTAAATGCCTTCATTGTGA-CTGATCACAAAGATTCTC 1642
Query 1552 GTTACTTTGCGAGACTGTG-GAAAGGAAGCAAATTATA-ACAATCTAAAGATTATCATCT 1609
| ||| | ||| ||||| ||| | |||| || |||| | ||||| |||||||||||||
Sbjct 1643 -TCACTCTAAGAGGCTGTGCGAATG-AAGCTAACTATAGA-AATCTTAAGATTATCATCT 1699
Query 1610 ATGACTTTTCAAGACCAAGGTTAACTATACCAAGGCACATGATTCCTCAAACAGAACACC 1669
|||||||||| ||||||||||||| |||||||||||||||| | ||||| ||||||||||
Sbjct 1700 ATGACTTTTCGAGACCAAGGTTAAATATACCAAGGCACATGGTGCCTCAGACAGAACACC 1759
Query 1670 CAACTAT-TCTCTCTGTCTT-GCACTCAGAGAATACTACTGTTCTTAACGTCTTGGTGGA 1727
||||||| | |||||||| | | |||| || || | || || ||||| |||||||||||
Sbjct 1760 CAACTATAT-TCTCTGTCATAG-ACTCTGATAACCCAACCGTCCTTAATGTCTTGGTGGA 1817
Query 1728 TGTGAGTGGTGTAGAGCGGCGAGTGCTTGCAGAGAATTATGAAGTTGGCAAGACCATTGC 1787
| ||||||||| ||| ||| |||||||||||| |||||||| | || ||| | ||||
Sbjct 1818 TCAGAGTGGTGTTGAGAGGCAAGTGCTTGCAGAAAATTATGAGGAGGGAAAGGCGGTTGC 1877
Query 1788 CTTTGAGAGAAGGCTTTCGCATCTGAATGATGTTTTCACTATAGATGGATACCGAATGTT 1847
|||| || |||||| || ||||||| || |||| |||| |||| |||||| ||||||
Sbjct 1878 ATTTGGGAAAAGGCTCTCAAATCTGAAGGAGGTTTACACTTTAGACGGATACAAAATGTT 1937
Query 1848 TTCCCGTGGGCCTGTTCAGACAACCCTTCCTCCCCGTTCCCGGAGACCTACTCGATTGTG 1907
|| |||||||| |||||||| || |||||||| | ||| || |||||| | ||| | ||
Sbjct 1938 TTTTCGTGGGCCAGTTCAGACTACTCTTCCTCCTCTTTCTCGTAGACCTTCGCGACTCTG 1997
Query 1908 TGCTTCTTTTGATGACCAAATCAAGGATCTTGAAATAGAGGCCTCAAAAGAACAAAGTGA 1967
|||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1998 TGCTTCTTTTGATGACCAGATCAAGGATCTTGAAATAGAGGCTTCAAAAGAACAAAACGA 2057
Query 1968 GATACAGGAATGCAGGGGACAAAAGAGGGAGGCAGAA-ATGAATCTCGAGGGTCTTGAAT 2026
|||| | |||||| | ||| |||||||||||||| | |||||| |||| ||||| |
Sbjct 2058 GATAAATCAATGCATGAGACGTAAGAGGGAGGCAGAGGA-GAATCTTGAGGAACTTGAGT 2116
Query 2027 CAACAA-TGCGT-AGACTGAAGAAGCAACACACCCAA-CTAGAGAAAGATTTGACAAGGA 2083
| || |||| | |||||||||||| | || |||| | |||||| | |||||| | |
Sbjct 2117 TGA-AAGTGCGCCA-ACTGAAGAAGCACCGCAGCCAAGC-AGAGAAGGTTTTGACGACAA 2173
Query 2084 AGGAAATTGAAATGCAGGATCTGAAAAATTCAGTCGCTTCTGAAACCAAAGTATCACCTA 2143
||||| |||| ||||| ||| |||| ||| |||||||| |||| | | ||| || ||||
Sbjct 2174 AGGAACTTGAGATGCACGATTTGAAGAATACAGTCGCTGCTGAGATCGAAGCATTACCTT 2233
Query 2144 CTTCAAGTGTTAATGAGCTTCATC-TAGATATCATGAAATTCCAAGAAGAGATAGAGGAG 2202
|||||||||||||||||||||| | | || ||||||||| || |||||||||||| |||
Sbjct 2234 CTTCAAGTGTTAATGAGCTTCAACGT-GAAATCATGAAAGACCTAGAAGAGATAGATGAG 2292
Query 2203 AAAGAATCCTTGCTAGAAAAACTTCAAGACTCCTTGAAGGAAGCTGAAATAAAGGCTAAT 2262
|||||| | || || || || || ||| ||| |||||| |||||||| |||||||||||
Sbjct 2293 AAAGAAGCTTTCCTTGAGAAGCTCCAAAACTGCTTGAAAGAAGCTGAGCTAAAGGCTAAT 2352
Query 2263 GAACTTAAAGCTTCATATGAAAA-AT---T-A-T-AT----GGG-GAAATTGAAGCCCTT 2310
|||||| ||||| || ||| || || | | | | ||| |||||||| ||| ||
Sbjct 2353 AAACTTACAGCTTTATTTGAGAACATGCGTGAGTCAGCCAAGGGTGAAATTGATGCCTTT 2412
Query 2311 GAGAAAGCTGAGGATGAGCTAAAGGAGAAAGAAGAA-GAACTCCAATCCGCAGAAACGGA 2369
||| |||| ||| ||||||||||| ||| || ||| || || || || || ||| ||||
Sbjct 2413 GAGGAAGCAGAGAATGAGCTAAAGAAGATTGA-GAAAGACCTTCAGTCTGCCGAAGCGGA 2471
Query 2370 GAAGAA-CCATTATGAGGATATAATGAAGGACAAGGTCTTACCCGAGATTAA-ACAGGCT 2427
||| || |||||| ||| | |||||||| |||||||| |||| || ||||| | | |||
Sbjct 2472 GAA-AATCCATTACGAGAACATAATGAAAAACAAGGTCCTACCTGATATTAAGA-ATGCT 2529
Query 2428 GAGGCTAAATATGAGGAACTTAAAACGAAGCGGCAGGAAAGTAACGAGAAGGCCTCC-AT 2486
|||||||| || ||||| ||||||| ||||| |||||||| || |||||||||| |
Sbjct 2530 GAGGCTAACTACGAGGAGCTTAAAAATAAGCGAAAGGAAAGTGACCAGAAGGCCTCTGA- 2588
Query 2487 AATTTGTCCTGAGAGT-ACGATAAGAG-CTTTGGGTCCTTGGGATGGG-GCCACTCCTTT 2543
|||||||||||||||| | |||| || |||||||||| ||||||||| | ||||||
Sbjct 2589 AATTTGTCCTGAGAGTGA-GATA-GAATCTTTGGGTCCCTGGGATGGGAGT-ACTCCTGA 2645
Query 2544 GCAGCTTAGTGCTCAGATTAACAAAATAAATCATAGACTGAAGCGAGAGAATGAGAAGTG 2603
||| || ||||||||||||| || ||| ||||| ||||| | ||||||||| ||
Sbjct 2646 GCAACTCAGTGCTCAGATTACCAGAATGAATCAGAGACTTCATCGAGAGAATCAG----- 2700
Query 2604 CTTAAGTTTCTGTGCCTTGTATTCTGAATCAATCGATGACCTCAGGATTATGCACGAG-G 2662
| | |||| | | | | || | ||| | |||||||| ||||| ||| | ||| |
Sbjct 2701 C--A-GTTT-T---C-T-GAAT-C--AAT---T-GATGACCTTAGGATGATGTATGAGAG 2744
Query 2663 AAAAAGAACAGAA-GATTGGGAAGAAACGCAAAACTTA-CAAAAGCTTTCGAGAAAAACT 2720
| |||| ||| ||||| ||||| |||||| | || ||| | | | |||||||||||
Sbjct 2745 CCTA-GAAC-GAAAGATTGCAAAGAAGCGCAAATCCTATCAAGACCAT-CGAGAAAAACT 2801
Query 2721 CAAGGTCTGCAAAGATGCAGTAGACTCACGGTGGAACAAGCTCCAAAGAAATAAAGATCT 2780
|| || ||||||| |||| |||| ||||||||| ||| | ||||||||| | |||
Sbjct 2802 CATGGCCTGCAAAAATGCTCTAGATTCACGGTGGGCCAAATTTCAAAGAAATGCATCTCT 2861
Query 2781 TCTGAAGCCCCAATTAACTTGGCAATTTAACTCTCATTTAGGAAAGAAAGGTATCAGTGG 2840
||| || ||| ||||| |||||||| ||| |||| || ||||||||||||||||| ||
Sbjct 2862 TCTTCGGCGCCAGTTAACATGGCAATTCAACGCTCACTTGGGAAAGAAAGGTATCAGCGG 2921
Query 2841 AAATATCAGAGTCTCTTATGAAGACAAAACTTTGTCCATAGAGGTTAAGATGCCTCAAGA 2900
| | |||| |||| ||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 2922 ACACATCAAAGTCAGTTATGAAAATAAAACTTTGTCCATAGAGGTTAAAATGCCTCAAGA 2981
Query 2901 TGCAACAAACAGTG-CTGTTCGAGATACTAGAGGGCTTTCAGGTGGGGAACGATCTTTCT 2959
||||||| || || | |||||||| || | ||| |||||||| || ||||| |||||||
Sbjct 2982 CGCAACAAGCAATGTC-GTTCGAGACACCAAAGGTCTTTCAGGCGGAGAACGTTCTTTCT 3040
Query 2960 CGACTTTATGTTTCGCATTGGCTCTTCACAATATGACTGAAGCCCCAATTCGAGCAATGG 3019
| ||||||||||| ||| | ||||||||| | ||||| |||||||| ||||||||||||
Sbjct 3041 CAACTTTATGTTTTGCACTAGCTCTTCACGAGATGACAGAAGCCCCGTTTCGAGCAATGG 3100
Query 3020 ACGAGTTTGATGTGTTTATGGACGCAGTTAG-CAGGAAAATCAGCTTAGACACATTGGTT 3078
| |||||||||||||||||||| ||||| || | ||||||| ||||| ||| || ||||
Sbjct 3101 ATGAGTTTGATGTGTTTATGGATGCAGTCAGTC-GGAAAATTAGCTTGGACGCACTGGTG 3159
Query 3079 GATTTCGCA-TTGGAACAAGGTTCACAGTGGATGTTCATCACTCCTCATGATATAAGTAT 3137
||||| ||| ||||| |||| || ||||||||||||||||| ||||||||||| || ||
Sbjct 3160 GATTTTGCAATTGGAG-AAGGATCGCAGTGGATGTTCATCACCCCTCATGATATCAGCAT 3218
Query 3138 GGTAAAGTCACACGAGAAGATAAAGAAGCAACAAATGGCTGCTCCTCGTTCTTGA 3192
||| ||||| ||||||| ||||||||| || ||||||||||||||||||||||||
Sbjct 3219 GGTGAAGTCGCACGAGAGGATAAAGAAACAGCAAATGGCTGCTCCTCGTTCTTGA 3273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 158778374595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5