BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487604
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07690.1 | Symbols: MYB29, ATMYB29, PMG2 | myb domain protei... 1857 0.0
AT5G61420.2 | Symbols: MYB28, HAG1 | myb domain protein 28 | ch... 427 1e-118
> AT5G07690.1 | Symbols: MYB29, ATMYB29, PMG2 | myb domain protein
29 | chr5:2446764-2448543 FORWARD LENGTH=1595
Length=1595
Score = 1857 bits (1005), Expect = 0.0
Identities = 1147/1214 (94%), Gaps = 16/1214 (1%)
Strand=Plus/Plus
Query 211 ATGTCAAGAAAGCCATGTTGTGTGGGAGAAGGGCTGAAGAAAGGAGCATGGATC-GCCGA 269
|||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||
Sbjct 327 ATGTCAAGAAAGCCATGTTGTGTGGGAGAAGGACTGAAGAAAGGAGCATGGA-CTGCCGA 385
Query 270 AGAAGACAAGAAACTCATCTCTTACATTCATGAACACGGTGAAGGAGGCTGGCGTGACAT 329
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 386 AGAAGACAAGAAACTCATCTCTTACATTCATGAACACGGTGAAGGAGGCTGGCGTGACAT 445
Query 330 CCCCCAAAAAGCTGGACTAAAACGATGTGGAAAGAGTTGTAGATTGCGATGGGCTAACTA 389
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 446 TCCCCAAAAAGCTGGACTAAAACGATGTGGAAAGAGTTGTAGATTGCGATGGGCTAACTA 505
Query 390 TTTGAAACCTGATATCAAGAGAGGAGGGTTTAGTTACGAGGAGGAACAGATTATCATCAT 449
|||||||||||| ||||||||||||| |||||| || |||||||||||||||||||||||
Sbjct 506 TTTGAAACCTGACATCAAGAGAGGAGAGTTTAGCTATGAGGAGGAACAGATTATCATCAT 565
Query 450 GCTTCACGCCTCTCGCGGCAACAAGTGGTCAGTCATAGCGAGACATTTGCCCAAAAGAAC 509
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 566 GCTACACGCTTCTCGCGGCAACAAGTGGTCAGTCATAGCGAGACATTTGCCCAAAAGAAC 625
Query 510 AGATAACGAGATTAAGAACTACTGGAACACGCATCTCAAAAAGCGCCTGATCGATAAGGG 569
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 626 AGATAACGAGATTAAGAACTACTGGAACACGCATCTCAAAAAGCTCCTGATCGATAAGGG 685
Query 570 AATCGATCCCGTGGCCCACAAGCCACTTGCCTATGATTCAAACCCGGAAGAGCAATCGCA 629
||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 686 AATCGATCCCGTGACCCACAAGCCACTTGCCTATGACTCAAACCCGGATGAGCAATCGCA 745
Query 630 ATCGGCGGGTTCCATCTCTCCAAAGTCTCTTCCTCCTTCAAGTTCCTACAATGTACAGGA 689
||||| | ||||||||||||||||||||||||||||||||| ||| | ||||||| |||
Sbjct 746 ATCGG-G--TTCCATCTCTCCAAAGTCTCTTCCTCCTTCAAGCTCCAAAAATGTACCGGA 802
Query 690 GATAAGCAGCAGTGATGAGACAGCGAAATATGATGCTTCCTTGAGCTCCAAGAAACGTTG 749
||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 803 GATAACCAGCAGTGACGAGACACCGAAATATGATGCTTCCTTGAGCTCCAAGAAACGTTG 862
Query 750 TTTTATGAGATCGAGTTCTACATCAAAACTGTTAAACAAAGTGGCAGCTAGGGCTGCTTC 809
||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 863 TTTTAAGAGATCGAGTTCTACATCAAAACTGTTAAACAAAGTTGCAGCTAGGGCTTCTTC 922
Query 810 CATAGGAAATAT-CTTAG-CAGCCTCCATCCAAGGAACCTTGATCAGCTCTACACCGTTG 867
||| |||| ||| || || | ||||||||| |||||||||||||||||||||||||||||
Sbjct 923 CATGGGAACTATACT-AGGC-GCCTCCATCGAAGGAACCTTGATCAGCTCTACACCGTTG 980
Query 868 TCTTCATGTCTCAATGATGACTTTTCCGAAACAAGTCAATTTCAGATGGAAGAATTTGAT 927
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 981 TCTTCATGTCTAAATGATGACTTTTCTGAAACAAGTCAATTTCAGATGGAAGAATTTGAT 1040
Query 928 CAATTCTGTCAGTCATCTGAACACATAATTGATCATATGAAAGAAGACATCAGCATCAAC 987
| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1041 CCATTCTATCAGTCATCTGAACACATAATTGATCATATGAAAGAAGATATCAGCATCAAC 1100
Query 988 AATTCCGAATATGATTTCTCGCAGTTTCTTGAGCAGTTTAGTAAAAATGAAGGCGAAGAA 1047
||||||||||| ||||||||||||||||| |||||||||||||| || ||||| ||||||
Sbjct 1101 AATTCCGAATACGATTTCTCGCAGTTTCTCGAGCAGTTTAGTAACAACGAAGGGGAAGAA 1160
Query 1048 GCTGACAATATTGGGGGAGGATATAACCAAGATCTGCTTATGTCTGATGTCTCATCAACA 1107
|||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1161 GCTGACAATACTGGAGGAGGATATAACCAAGATCTTCTTATGTCTGATGTCTCATCAACA 1220
Query 1108 AGCGTTGATGAAGACGATATGATG-AAGAACATAACCAGTTGGTCACATTATCTCCTTGA 1166
||||||||||||||||| |||||| || |||||||| |||||||| |||||||||||||
Sbjct 1221 AGCGTTGATGAAGACGAGATGATGCAA-AACATAACTGGTTGGTCAAATTATCTCCTTGA 1279
Query 1167 CCATTCCGATTTTAATTATGACACGAACCAAGATTACGACGACAAGAACTTCATATGATC 1226
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1280 CCATTCCGATTTCAATTATGACACGAGCCAAGATTACGACGACAAGAACTTCATATGATC 1339
Query 1227 CGTTGATTGGTTACCGGACTAGAGTTGACCGGTTCATGTCAT--GGTTCTCTTAGATATT 1284
||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1340 CGTTGATTGCTTACCGGACTAGAGTTGACCGGTTAATGTCATATGGTTCTCTTAGATATT 1399
Query 1285 TGTCAAGTTATAGTAAAGGTCCATTATAGGGTCACTATATATTAATATTCAATAATGGAT 1344
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 1400 TGTCAAGTTATAGTAAAGGTCCACTATAGGGTCACTATATATTAATATTCAGTAATGGAT 1459
Query 1345 TCTCTTAGTTAGAGA-CCTTATGGGATGCCATGGATCAATTAGTATTTGATTCGCGGGAG 1403
||||||||||||||| |||| || ||||| ||||||||||||||||||||| |||||||
Sbjct 1460 TCTCTTAGTTAGAGAACCTTGTG--ATGCCGTGGATCAATTAGTATTTGATTTGCGGGAG 1517
Query 1404 ACACGAGttttttt 1417
||||||||||||||
Sbjct 1518 ACACGAGTTTTTTT 1531
Score = 161 bits (87), Expect = 1e-38
Identities = 114/126 (90%), Gaps = 6/126 (5%)
Strand=Plus/Plus
Query 65 TTAATATGAAAACACACAATCAATATTCAAC-G--GTCTACCACAGTTTCTCAGTCAGTT 121
|||||||||||||||| |||| || |||| | |||||||||||||||||||||||||
Sbjct 109 TTAATATGAAAACACAAAATC-CTA--CAACGGTCGTCTACCACAGTTTCTCAGTCAGTT 165
Query 122 TCATATTCAGATGCATCAGAGTTCTTATCAACAGATCTATCAGTCTCTTGCCTTAAATTC 181
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| ||
Sbjct 166 TCATATTCAGATGCATCAGAGTTCTCATCAAGAGATCTATCAGTCTATTGCCTTAAACTC 225
Query 182 GACGAC 187
||||||
Sbjct 226 GACGAC 231
> AT5G61420.2 | Symbols: MYB28, HAG1 | myb domain protein 28 |
chr5:24689151-24690797 REVERSE LENGTH=1427
Length=1427
Score = 427 bits (231), Expect = 1e-118
Identities = 339/391 (87%), Gaps = 8/391 (2%)
Strand=Plus/Plus
Query 210 AATGTCAAGAAAGCCATGTTGTGTGGGAGAAGGGC-TGAAGAAAGGAGCATGGATCGCCG 268
||||||||||||||||||||| || |||||| ||| |||||||||||||||||| | |||
Sbjct 2 AATGTCAAGAAAGCCATGTTGCGTCGGAGAA-GGCTTGAAGAAAGGAGCATGGACCACCG 60
Query 269 AAGAAGACAAGAAACTCATCTCTTACATTCATGAACACGGTGAAGGAGGCTGGCGTGACA 328
| || ||||||||||||||||||||||| || || ||||| || ||||||||||| ||||
Sbjct 61 AGGAGGACAAGAAACTCATCTCTTACATCCACGACCACGGCGAGGGAGGCTGGCGCGACA 120
Query 329 TCCCCCAAAAAGCTGGACTAAAACGATGTGGAAAGAGTTGTAGATTGCGATGGGCTAACT 388
| |||||||||||||| | ||||| |||||||||||||||||| |||||||| | ||||
Sbjct 121 TTCCCCAAAAAGCTGGGTTGAAACGGTGTGGAAAGAGTTGTAGACTGCGATGGACCAACT 180
Query 389 A-TTTGAAACCTGATATCAAGAGAGGAGGGTTTAGTTAC-GAGGAGGAACAGATTATCAT 446
| || |||||||| ||||| ||||| | |||||||| | ||||| || |||||||||||
Sbjct 181 ACCTT-AAACCTGAGATCAAAAGAGGCGAGTTTAGTT-CAGAGGAAGAGCAGATTATCAT 238
Query 447 CATGCTTCACGCCTCTCGCGGCAACAAGTGGTCAGTCATAGCGAGACATTTGCCCAAAAG 506
||||||||| || ||||| |||||||||||||| ||||||||||||||||| || | |||
Sbjct 239 CATGCTTCATGCTTCTCGTGGCAACAAGTGGTCGGTCATAGCGAGACATTTACCTAGAAG 298
Query 507 AACAGATAACGAGATTAAGAACTACTGGAACACGCATCTCAAAAAGCGCCTGATCGATA- 565
|||||| |||||||| ||||||||||||||||||||||||||||| || |||| || |
Sbjct 299 AACAGACAACGAGATCAAGAACTACTGGAACACGCATCTCAAAAAACGTTTGATGGA-AC 357
Query 566 AGGGAATCGATCCCGTGGCCCACAAGCCACT 596
|||| || ||||||||| | |||||||||||
Sbjct 358 AGGGTATTGATCCCGTGACTCACAAGCCACT 388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69828958095
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5