BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487606
Length=1583
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07710.1 | Symbols: | Polynucleotidyl transferase, ribonucl... 2377 0.0
> AT5G07710.1 | Symbols: | Polynucleotidyl transferase, ribonuclease
H-like superfamily protein | chr5:2453135-2455546 FORWARD
LENGTH=1771
Length=1771
Score = 2377 bits (1287), Expect = 0.0
Identities = 1492/1590 (94%), Gaps = 17/1590 (1%)
Strand=Plus/Plus
Query 1 TTATTCAATGGATCCGGAGGATAGGTCCGAGATTGCCTTCTTCGACGTTGAGACGACTGT 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 169 TTATTCAATGGATCCAGAGGATAGGTCCGAGATTGCCTTCTTCGACGTTGAGACGACTGT 228
Query 61 ACC-AAACAGAGGTCAACGTTTCGCGATTCTAGAATTCGGGTCAATCCTTGTTTGCCCGA 119
||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 229 ACCAAAAC-GAGGTCAACGTTTCGCGATTCTAGAATTCGGGTCAATCCTCGTTTGCCCGA 287
Query 120 AGAAGCTTACGGAGCTCCGAAGCTACACGACTCTGGTCCAACCTGCAGATTTGAGTCTCA 179
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 288 AGAAGCTAACGGAGCTCCGAAGCTACACGACTCTCGTCCAACCTGCAGATTTGAGTCTCA 347
Query 180 TATCTTCCTTGTCCGTCAGGTGCAATGGCATCAAGCGTGACGACGTCGTTTTGGCACCTT 239
|||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 348 TATCTTCCTTGTCCGTGAGGTGCAATGGTATCAAACGTGACGACGTCGTTTTGGCACCTC 407
Query 240 TGTTTGCCGACATCGCTGATACTGTCTACGACATTCTCCATGGGAGGATTTGGGCAGGTC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 408 TGTTTGCCGACATCGCTGATACTGTCTACGACATTCTCCATGGGAGGATTTGGGCAGGTC 467
Query 300 ACAACATATTGAGGTTTGATTGTGCAAGGATCAGAGAAGCATTTGCAGAGATTGGACGTC 359
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 468 ATAACATATTGAGGTTTGATTGTGCAAGGATCAGAGAAGCATTTGCAGAGATTGGTCGTC 527
Query 360 AACCACCCGTGCCAAAAGGCGCCATCGACTCATTGGGTTTGCTAACTCAGAAGTTTGGTA 419
||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 528 AACCACCCGAGCCAAAAGGCGCCATTGATTCATTGGGTTTGCTAACTCAGAAGTTTGGTA 587
Query 420 GAAGAGCTGGTGATATGAAGATGGCAACTTTGGCTAGATATTTCGGACTTGGGAATCAGA 479
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 588 GAAGAGCTGGTGATATGAAGATGGCAACTTTGGCTAGATATTTCGGACTCGGGAATCAGA 647
Query 480 CGCATAGGAGCCTGGATGATGTTAGAATGAATCTTGAGGTTCTCAAATATTGTGCTACTG 539
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 648 CGCATAGGAGCCTGGATGATGTTCGAATGAATCTTGAGGTTCTCAAATATTGTGCTACTG 707
Query 540 TCTTGTTCTTGGAGTCGAGTCTCCCCTATGCACATGTAGATAATTCGGTATCTCCTGGAA 599
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 708 TCTTGTTCTTGGAGTCGAGTCTCCCATATGCACATGTAGATAATTCGGTATCTCCTGAAA 767
Query 600 CTACTAGTTCAAGGAGACGTATTGATACATCTCACGAGGGTAATACTGTAACAACCTGTG 659
||| |||||||||||||||||||||| |||||| |||||||||||||||||| |||| ||
Sbjct 768 CTATTAGTTCAAGGAGACGTATTGATGCATCTCGCGAGGGTAATACTGTAACGACCTCTG 827
Query 660 TTAGGCTACCATCCATTAGCGAGAACAGTGCAGCTCAGCCAGATCCGTTCAACATGAGCA 719
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TTAGGCTACCATCCATTAGCGAGAACAGTGCAGCTCAGCCAGATCCGTTCAACATGAGCG 887
Query 720 TCTTGAGGAATGAAATGGCTTCCGACAACCACCTTCAATCAGACATTCTCATGGAAGAAG 779
|||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 888 TCTTGAGGAATGAAATGGCTTCTGACAACCATATTCAATCAGACATTCTCATGGAAGAAG 947
Query 780 AACAAATTCAACCCTCTGATATTGTTGTCC-CTGAGAATACCAGTGACCATGAGGGATTC 838
|||||||| ||||||||||| |||| | || ||||||||||||||||||||||||| |||
Sbjct 948 AACAAATTGAACCCTCTGATGTTGTCG-CCTCTGAGAATACCAGTGACCATGAGGGTTTC 1006
Query 839 TTGGCTCCTGATGCGGTGTCTCTTCCAAACATCAAAGCGATTCT-TGTCCCGTTTTATCC 897
||| | ||||| ||| |||||||| |||||||||||||||| || | |||||||||||||
Sbjct 1007 TTGACGCCTGACGCGATGTCTCTTTCAAACATCAAAGCGATGCTCT-TCCCGTTTTATCC 1065
Query 898 TGGAAGCGAAATGATGAAACTAAAGCTACTTCACGGTGATTCCCCTCTGCAGCTCTACTG 957
||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1066 TGGAAGCCAAATGATGAAACTAAAGCTACTCCACGGCGATTCCCCTCTGCAGCTCTACTG 1125
Query 958 TTCCTGTCTGAAAGTACGGTTTGGAGTCAGTGGGAAGTTTCTGGATAACACCGGGAGACG 1017
||| | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1126 TTCTTATCTGAAAATACGGTTTGGAGTCAATGGGAAGTTTCTGGATAACACCGGGAGACG 1185
Query 1018 GAAGTTAAACTTTGTGGTTGATCTGAATCCAAGCCTGTGCAGTATACTCGAAGCATGTGA 1077
|| |||||||||||| |||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1186 GAGGTTAAACTTTGTTGTTGATCTGAATCCAAGCCTTTACAGTATACTCGAAGCATGTGA 1245
Query 1078 CAGTAATGCACAGAAACTATCTGTTGATTCAGTTTCCACTTCTG-GCTGGAACCCGGTCG 1136
||||||||| |||||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 1246 CAGTAATGCGCAGAAACTATCTGTTGATTCAGGTTCCACTTCTGAG-TGGAACCCGGTCG 1304
Query 1137 TGAATCCAATGAAGGGTTTTGTAAACTACCCTAACGCAAGGATACATATTGCGACAGAGA 1196
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1305 TGAATCCAATGAAGGGATTTGTTAACTACCCTAACGCAAGGATACATATTGCGACAGAGA 1364
Query 1197 TAAATGTAGATGCAGCTCGATATGCAACAGAGATACACCAGAGAGAGTTCTCTGGAGCTA 1256
|||||| ||||| |||||| |||||||||||||||||||| ||||||| |||||||||||
Sbjct 1365 TAAATGGAGATGAAGCTCGGTATGCAACAGAGATACACCAAAGAGAGTCCTCTGGAGCTA 1424
Query 1257 CTCAGAAACTAATCTTCAGCAACCCGAGTGGTGAGGAGCTCGAATCGATGCTGACCACGG 1316
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||
Sbjct 1425 CTCAGAAACTAATCTTCAGCAACCCGAACAATGAGGAGCTCGAATCGTTGCTGACCACGG 1484
Query 1317 GAAGTGTTGTTGATGCATTCTTGTCTCTGGAACCGTATGATTATCAGCAGAAAGCTGGAA 1376
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1485 GAAGTGTTGTTGATGCATTCTTGTCTCTTGAACCGTATGATTATCAGCAGAAAGCTGGAA 1544
Query 1377 TCCGCCTTGTTGCCAAAAAACTAGTCATACACTCGTAAATCATACATAATTGTTAATACC 1436
||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||
Sbjct 1545 TCCGCCTTGTTGCCAAAAAGCTAGTCATTCAGTCGTAAATCATACATAATTGTTAATACC 1604
Query 1437 AAAAAAGTAA-GAAAATGGAGCTTAGTAGATGTACAAacacacacacacaca-cacacaG 1494
||| |||| |||||||||||||||||||||||| ||| |||| | | || ||
Sbjct 1605 AAATT-GTAAAGAAAATGGAGCTTAGTAGATGTACGCACATACACTCTCTGTTCATGTAG 1663
Query 1495 TTTGAGAAATGCTTTATGATCTGGAACATAAATAGAAACCTCTTTAATCTCTTAAGACAC 1554
|| ||||||||||||||||| | ||||||||||||||||||||||| ||| | |||||||
Sbjct 1664 TT-GAGAAATGCTTTATGATTTTGAACATAAATAGAAACCTCTTTA-TCT-T-AAGACAC 1719
Query 1555 AAGATTGCATAATTATT-ATTTTTATAAAA 1583
|||||||||||| |||| ||||| ||||||
Sbjct 1720 AAGATTGCATAAATATTTATTTT-ATAAAA 1748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78162248565
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5