BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487607
Length=1604
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07720.1 | Symbols: | Galactosyl transferase GMA12/MNN10 fa... 2453 0.0
AT1G74380.1 | Symbols: XXT5 | xyloglucan xylosyltransferase 5 |... 1005 0.0
> AT5G07720.1 | Symbols: | Galactosyl transferase GMA12/MNN10
family protein | chr5:2455634-2457316 FORWARD LENGTH=1683
Length=1683
Score = 2453 bits (1328), Expect = 0.0
Identities = 1523/1615 (94%), Gaps = 21/1615 (1%)
Strand=Plus/Plus
Query 1 ACAATGGCTCATTGATCAAACTGTTTTA-CGAAG-TACAACAAAAATGGCAAAGGAGGAC 58
|||||||||| ||||||||||||||||| | ||| |||||||||||||| ||||||||||
Sbjct 79 ACAATGGCTCTTTGATCAAACTGTTTTATCCAAGTTACAACAAAAATGGGAAAGGAGGAC 138
Query 59 GGTTTCAGGACTCAGAAGCGCGTATCAAGC-GCTTCCTCCGCCGCCGCCGGCGTTCTTCC 117
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 139 GGTTTCAGGACTCAGAAGCGCGTATCAA-CAGCTTCCTCCGCCGCCGCCGGCGTTCTTCC 197
Query 118 GACGACGATGGCGAGTGGCGCAGGAAGGAGACCACCACCACGTGGCAGACAGATCCAGAA 177
|||||||||||||||||| | || ||||||||||||||||||||| ||||||||||| ||
Sbjct 198 GACGACGATGGCGAGTGGTGGAGTAAGGAGACCACCACCACGTGGTAGACAGATCCA-AA 256
Query 178 A-ACGTTCAACAACGTAAAAATGACAATCCTTTGTGGCTTCGTCACCATTCTCGTCTTAC 236
| |||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||
Sbjct 257 AGACGTTCAACAACGTGAAAATGACAATCCTTTGTGGCTTCGTCACCATCCTCGTCCTAC 316
Query 237 GTGGCACTATCGGCGTTAACTTCGGAACTTCTGACGCCGACGTCGTTAACCAGAACATAA 296
|||||||||||||| |||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 317 GTGGCACTATCGGCATTAACTTCGGAACTTCCGACGCCGACGTCGTAAACCAGAACATTA 376
Query 297 TCGAAGAGACTAACCGACTTCTAGCTGAGATCCGATCCGATTCGGATCTTTCAGACTCAA 356
|||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||
Sbjct 377 TCGAAGAGACTAACCGACTTCTAGCTGAGATCCGATCCGATTCGGATCCTACCGACTCAA 436
Query 357 ACGAGCCACCTGATTCGGATCTTGATCTCAACATGACGTACACTCTCGGACCCAAGATCA 416
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 437 ACGAGCCACCTGATTCGGATCTTGACCTCAACATGACGTACACTCTCGGACCCAAGATCA 496
Query 417 CTAACTGGGATCAACAACGGAAACTTTGGTTAACGCAAAACCCAGATTTCCCCAGTTTTG 476
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 497 CTAACTGGGATCAAAAACGGAAACTTTGGTTAACGCAAAACCCAGATTTCCCCAGTTTCA 556
Query 477 TCAATGGTAAAGCTAAGGTTTTGCTTTTAACAGGTTCGCCTCCAAAACCTTGTGACAATC 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 557 TCAATGGTAAAGCTAAGGTTTTGCTTTTAACAGGTTCGCCTCCAAAACCTTGTGACAACC 616
Query 537 CGATTGGTGATCATTACCTATTGAAATCGGTGAAGAACAAGATTGATTATTGTAGGATTC 596
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 617 CTATTGGTGATCATTACCTGCTGAAATCGGTGAAGAACAAGATTGATTATTGTAGGATTC 676
Query 597 ATGGAATTGAGATTGTGTATAACATGGCTCATTTGGACAAGGAGCTTGCTGGGTATTGGG 656
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 677 ATGGGATTGAGATTGTGTATAACATGGCTCATTTAGACAAGGAGCTTGCTGGGTATTGGG 736
Query 657 CAAAGCTTCCAATGATCAGGAGATTGATGTTGTCTCACCCTGAAATTGAATGGATTTGGT 716
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 737 CAAAGCTTCCAATGATCAGGAGATTGATGTTGTCTCATCCTGAAATTGAATGGATTTGGT 796
Query 717 GGATGGACAGTGATGCTCTGTTCACTGACATGGTGTTTGAGATTCCTTTGTCTAGATATG 776
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 GGATGGACAGTGATGCTTTGTTCACTGACATGGTGTTTGAGATTCCTTTGTCTAGATATG 856
Query 777 AGAATCATAACTTGGTTATCCATGGATATCCGGATTTGTTGTTTGATCAGAAGTCGTGGA 836
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 857 AGAACCATAACTTGGTTATTCATGGATATCCTGATTTGTTGTTTGATCAGAAGTCTTGGA 916
Query 837 TTGCTTTGAATACTGGTAGCTTCTTGTTTAGGAACTGTCAATGGTCTTTGGATTTGTTGG 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 917 TTGCTTTGAATACTGGTAGCTTCTTGTTTAGGAACTGTCAATGGTCTTTGGATTTGTTGG 976
Query 897 ATGCTTGGGCTCCAATGGGACCTAAAGGACCAATTCGGGAAGAAGCCGGGAAGATTCTCA 956
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 977 ATGCTTGGGCTCCAATGGGACCTAAAGGACCTATTCGGGAAGAAGCTGGGAAGATTCTCA 1036
Query 957 CTGCGAATCTTAAAGGAAGACCGGCGTTCGAAGCTGATGATCAGTCTGCATTGATCTATC 1016
| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1037 CCGCGAATCTTAAAGGAAGACCGGCTTTCGAAGCGGATGATCAGTCTGCATTGATCTATC 1096
Query 1017 TGTTGCTTTCGCAGAAGGAGACGTGGATGGAGAAAGTCTTTGTGGAGAATCAGTACTATC 1076
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1097 TGCTGCTTTCGCAGAAGGAGACGTGGATGGAGAAAGTGTTTGTGGAGAATCAGTACTATC 1156
Query 1077 TTCATGGGTTTTGGGAAGGATTAGTGGATAGGTATGAGGAGATGATAGAGAAGTATCATC 1136
||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| ||||
Sbjct 1157 TTCATGGGTTTTGGGAAGGTTTAGTGGATAAGTATGAGGAGATGATGGAGAAGTACCATC 1216
Query 1137 CGGGATTGGGAGACGAAAGATGGCCATTTATTACTCACTTTGTTGGATGTAAACCGTGTG 1196
| || |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 1217 CCGGTTTGGGAGATGAAAGATGGCCTTTTATTACTCACTTTGTTGGATGCAAACCGTGTG 1276
Query 1197 GAAGTTATGCGGATTACGCGGTTGAACGTTGCTTAAAGAGTATGGAGCGAGCATTCAACT 1256
| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1277 GGAGTTATGCTGATTACGCGGTTGAACGTTGCTTGAAGAGTATGGAGCGAGCATTCAACT 1336
Query 1257 TCGCGGATAATCAAGTGCTCAAGCTTTATGGGTTTGGTCACAGGGGATTGTTAAGCCCTA 1316
| |||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||
Sbjct 1337 TTGCGGATAATCAAGTGCTCAAACTGTATGGGTTTGGTCACAGGGGATTGTTAAGTCCTA 1396
Query 1317 AGATCAAGAGGATCAGGAACGAAACAACATTTCCACTGAAATTTGTCA-ACAGGTTTGAT 1375
|||||||||||||||| ||||| |||||||||||| ||||||| || | |||||||||||
Sbjct 1397 AGATCAAGAGGATCAGAAACGAGACAACATTTCCATTGAAATTCGT-AGACAGGTTTGAT 1455
Query 1376 ATTCGGAGAACAACACCGCTCAAGATTGAAGCGCGGAGCTAGCAGCCGATGAACCAGTTT 1435
|||||||||||||||||||||||||||||||| || |||||||||| |||||||||||||
Sbjct 1456 ATTCGGAGAACAACACCGCTCAAGATTGAAGCACGAAGCTAGCAGCTGATGAACCAGTTT 1515
Query 1436 --G---G-TAAAGCACAATCAGTTCCTACTTAGTTGAACAAAATTCTACATTGTTTCAAA 1489
| | |||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1516 CAGTTTGGTAAAGCACAATCAGTTCCTACTTAACTGAACAAAATGCTACATTGTTTCAAA 1575
Query 1490 GCTCACTTCTTTTACTTTTTGTTATATTTTTACCCTATATATAAAGTCAATAGATTCTTT 1549
|||||||||| |||| | | |||||||||||| |||||||||||||||| |||||||
Sbjct 1576 GCTCACTTCT----CTTTCT-T-ATATTTTTACCCAATATATAAAGTCAATATATTCTTT 1629
Query 1550 TGTTAAAACTTGAACAGAGGATGAATTATCAATTTGTTCAAGTACCTTTCACTGC 1604
||||||| |||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1630 TGTTAAA-CTTGAACAGAAGATGAATTATCAATTTGTTCAAGTACCTTTCAATGC 1683
> AT1G74380.1 | Symbols: XXT5 | xyloglucan xylosyltransferase 5
| chr1:27959578-27961454 FORWARD LENGTH=1877
Length=1877
Score = 1005 bits (544), Expect = 0.0
Identities = 1025/1255 (82%), Gaps = 41/1255 (3%)
Strand=Plus/Plus
Query 154 ACCACGTGGCAGACAGATCCAGAAAACGTTCAACAACGTAAAAATGACAATCCTTTGTGG 213
||| || || |||||||| ||||| ||||| |||||| | || || ||||| || |||||
Sbjct 381 ACCTCGAGGTAGACAGATGCAGAAGACGTTTAACAACATCAAGATCACAATTCTCTGTGG 440
Query 214 CTTCGTCACCATTCTCGTCTTACGTGGCACTATCGGCG-T--TAACTTCGGAA-CTTCTG 269
|||||||| |||||||||||||||||||||||||| | | |||| | |||| | ||
Sbjct 441 TTTCGTCACAATTCTCGTCTTACGTGGCACTATCGGTGTTGGTAACCTAGGAAGC-TC-A 498
Query 270 A-CGCCGACGTC-GTTAACCAGAACATAATCGAAGAGACTAACC-GACTTCTAGCTGAGA 326
| |||||| | | |||||||||||||| || || |||||||||| || ||||||||||||
Sbjct 499 AGCGCCGATG-CAGTTAACCAGAACATCATTGAGGAGACTAACCGGA-TTCTAGCTGAGA 556
Query 327 TCCGATCCGATTCGGATCTTTCAGACTCAAACGAGCCACCTGATTCG-GATCTTG-ATCT 384
||||||| |||||||||| | |||| | ||||| | || | ||| || |||
Sbjct 557 TCCGATCTGATTCGGATCCAACCGACTTGGATGAGCCTCAGGA-AGGTGAT-ATGAATCC 614
Query 385 CAACATGACGTACACTCTCGGACCCAAGATCACTAACTGGGATCA-ACAACGGAAACTTT 443
||| |||||| ||| || || |||||||| | |||||| | ||||| || | |
Sbjct 615 CAATGCGACGTATGTTCTAGGTCCTAAGATCACGGATTGGGAT-AGTCAACGTAAGGTAT 673
Query 444 GGTT-AACGCAAAACCCAGA-TTTCCCCAGTTTTGTCAATGGTAAAGCTAAG-GTTTTGC 500
|||| || || || || || ||| || ||| ||||||||| |||||| | | ||||
Sbjct 674 GGTTGAA-TCAGAATCCTGAGTTT-CCTAGTACTGTCAATGGCAAAGCT-CGAATCTTGC 730
Query 501 TTTTAACAGGTTCGCCTCCAAAACCTTGTGACAATCCGATTGGTGATCATTACCTATTGA 560
|||||||||| || ||||| || |||||||| || || |||||||||||||| || ||||
Sbjct 731 TTTTAACAGGATCTCCTCCTAAGCCTTGTGATAACCCCATTGGTGATCATTATCTTTTGA 790
Query 561 AATCGGTGAAGAACAAGATTGATTATTGTAGGATTCATGGAATTGAGATTGTGTATAACA 620
|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 791 AATCTGTGAAGAACAAGATTGATTATTGTAGGCTTCATGGAATTGAGATTGTGTATAACA 850
Query 621 TGGCTCATTTGGACAAGGAGCTTGCTGGGTATTGGGCAAAGCTT-CCAATGATCAGGAGA 679
||||||||||||| ||||| || ||||| ||||||||||| || |||||||| |||||
Sbjct 851 TGGCTCATTTGGATAAGGAACTCGCTGGCTATTGGGCAAAA-TTACCAATGATTAGGAGG 909
Query 680 TTGATGTTGTCTCACCCTGAAATTGAATGGATTTGGTGGATGGACAGTGATGCTCTGTTC 739
|||||||||||||| || ||| |||| ||||| ||||||||||| ||||||||| |||||
Sbjct 910 TTGATGTTGTCTCATCCAGAAGTTGAGTGGATCTGGTGGATGGATAGTGATGCTTTGTTC 969
Query 740 ACTGACATGGTGTTTGAGATTCCTTTGTCTAGATATGAGAATCATAA-CTTGGTTATCCA 798
||||| || ||||| |||| |||||| |||| ||| |||| ||||| || | | || ||
Sbjct 970 ACTGATATACTGTTTCAGATCCCTTTGGCTAGGTATCAGAAGCATAATCTAG-TGATTCA 1028
Query 799 TGGATATCCGGATTTGTTGTTTGATCAGAAGTCGTGGATTGCTTTGAATACTGGTAGCTT 858
||| |||||||| |||||||| |||||||||||||||||||||||||| || ||||| ||
Sbjct 1029 TGGTTATCCGGACTTGTTGTTCGATCAGAAGTCGTGGATTGCTTTGAACACAGGTAGTTT 1088
Query 859 -CTTGTTTAGGAACTGTCAATGGTCTTTGGATTTGTTGGATGCTTGGGCTCCAATGGGAC 917
|| | | ||||| ||||| ||||| ||||||||||| ||||||||||| || |||||||
Sbjct 1089 TCT-GCTGAGGAATTGTCAGTGGTCGTTGGATTTGTTAGATGCTTGGGCGCCTATGGGAC 1147
Query 918 CTAAAGGACCAATTCGGGAAGAAGCCGGGAAGAT-TCTCACTGCGAATCTTAAAGGAAGA 976
||||||| |||||||| || || ||||||||| | | | || || |||| ||||| |||
Sbjct 1148 CTAAAGGGCCAATTCGTGATGAGGCCGGGAAGGTAT-TGACGGCTTATCTGAAAGGTAGA 1206
Query 977 CCGGCGTTCGAAGCTGATGATCAGTCTGCATTGATCTATCTGTTGCTTTCGCAGAAGGAG 1036
|| || || || || ||||||||||| |||||||||||||| ||||||| ||||| ||
Sbjct 1207 CCAGCTTTTGAGGCAGATGATCAGTCAGCATTGATCTATCTCCTGCTTTCTCAGAAAGAT 1266
Query 1037 ACGTGGATGGAGAAAGTCTTTGTGGAGAATCAGTACTATCTT-CATGGGTTTTGGGAAGG 1095
|| |||||||||||||| |||||||||||||| |||||| || || ||||||||||||||
Sbjct 1267 ACATGGATGGAGAAAGTGTTTGTGGAGAATCAATACTAT-TTGCACGGGTTTTGGGAAGG 1325
Query 1096 ATTAGTGGATAGGTATGAGGAGATGATAGAGAAGTATCATCCGGGATTGGGAGACGAAAG 1155
|| || |||||||||||||||||||||||||||||||| ||||||||||| || || ||
Sbjct 1326 TTTGGTTGATAGGTATGAGGAGATGATAGAGAAGTATCACCCGGGATTGGGTGATGAGAG 1385
Query 1156 ATGGCCATTTATTACTCACTTT-GTTGGATGTAAACCGTGTGGAAGTTATGCGGATTACG 1214
|||||||||| | || || ||| ||||| |||||||||||||| || ||||| ||||| |
Sbjct 1386 ATGGCCATTTGTGACCCA-TTTCGTTGGGTGTAAACCGTGTGGTAGCTATGCTGATTATG 1444
Query 1215 CGGTTGA-ACGTTGCTTAAAGAGTATGGAGCGAGCATTCAACTTCGCGGATAATCAAGTG 1273
| || || | || |||| |||||||||||| | || || || || || || |||||||||
Sbjct 1445 CAGTCGAGAGGT-GCTTGAAGAGTATGGAGAGGGCCTTTAATTTTGCAGACAATCAAGTG 1503
Query 1274 CTCAAGCTTTATGGGTTTGGTCACAGGGGATTGTTAAGCCCTAAGATCAAGAGGATCAGG 1333
|||||||| ||||| ||| | || ||||||||||| ||||| ||||| |||||||||||
Sbjct 1504 CTCAAGCTGTATGGTTTTAGCCATAGGGGATTGTTGAGCCCCAAGATTAAGAGGATCAGA 1563
Query 1334 AACGAAACAA-CATTTCCACTGAAATTTGTCA-ACAGGTTTGATATTCGGAGAAC 1386
|| || ||| | | ||| || | ||||| | ||| |||||||||||| |||||
Sbjct 1564 AATGAGACAGTC-TCTCCTTTGGAGTTTGT-AGACAAGTTTGATATTCGCAGAAC 1616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79216460010
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5