BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487608
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07730.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1327 0.0
> AT5G07730.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G61360.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr5:2457347-2458430 REVERSE LENGTH=1004
Length=1004
Score = 1327 bits (718), Expect = 0.0
Identities = 859/926 (93%), Gaps = 13/926 (1%)
Strand=Plus/Plus
Query 29 AACTGAAGATGGCTGAAGATGAAGATC-TGTACTGTGAACAACAGCTGATTGGTACTTTA 87
||||||||||||||||||||||||||| | || ||||||||||| ||||||||| | ||
Sbjct 40 AACTGAAGATGGCTGAAGATGAAGATCAT-TATTGTGAACAACACCTGATTGGTCCATTG 98
Query 88 GATCCCAGTTCGTCAATGGTTGTCATCAGAGAATCGCCAATTTTCGCTAAGGACGATAAC 147
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 99 GATCACAGTTCGTCAATGGTTGTCATCAGAGAATCGCCAATTTTCGCCAAGGACGATGGC 158
Query 148 CTTGTTTTCCCGCCGATCTACCATGAGAATCTCCATGTCGCTTCTTCCGTCTATGGAGTC 207
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 159 GTTGTGTTCCCGCCGATCTACCATGAGAATCTCCATGTCGCTTCTTCCGTCTATGGAGTC 218
Query 208 GATAGGTACCTCGAATCTCCGTCGGAGTCCTCGTCTCCGTCATCTTCGTCGAGACGCTCT 267
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 219 GATAGATACCTCGAATCTCCGTCGGAATCCTCGTCTCCGTCATCTTCGTCGAGACGCTCT 278
Query 268 GGTTCATCTTCTTCTTTTCCGTTGTTCCCTTCTGATTCAGATGGACAAACGTCACCGACT 327
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||| ||||
Sbjct 279 GGTTCATCTTCTTCTTTTTCGTTGTTTCCTTCTGATTCAGATGGACAAACGTCACTGACT 338
Query 328 GCGTTTGAATTCGACCGGAAGTCTCCGTCGGAAACTGAAGAAAAATCTCCGCCGTTGTTG 387
||||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 339 GCGTTTGAATTTGACCGGAAGGCTCCGTCGGAAACTGAAGAAAAATCTCTGCCGTTGTTG 398
Query 388 CTAAGCGGCGAATCTCCACCGTCGGATTCAGACGAACAATCGCCATTTGAACAGATATCT 447
||||||| |||||||||||||| ||||| | ||||| ||||||||||||||||||
Sbjct 399 TTAAGCGGTGAATCTCCACCGTCCGATTCGGGGGAACAGTCGCCATTTGAACAGATA--- 455
Query 448 TCTCCGCGATTATTACCGTCTGAACAAGGCGACAAACCTCCACCGTGCGATTCAGACGGG 507
|||||||| |||||| ||||||||||||| ||| ||||||| ||||||||||| |||
Sbjct 456 TCTCCGCG---ATTACCTTCTGAACAAGGCGGCAAGTCTCCACCATGCGATTCAGATGGG 512
Query 508 AAATTACAGAGGAAACCATTGAATCGTGAAGTTGATGTCCTCCACGATTGGTGGGAGCTT 567
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 513 AAATTACTGGGGAAACCATTGAATCGTGAAGTTGATGTCCTCCACGATTGGTGGGAGCCT 572
Query 568 CTTCTTGTACGTTTATACTCCAAGTTGAAGAATTTGTTGACATGGTTCTCAAAGACTATC 627
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 573 CTTCTTGTACGTTTATACTCCAAGTTGAAGAATTTGTTGACCTGGTTCTCAAAGACTATC 632
Query 628 CGATCATTTTATCCAGTTCTTGCCATTGCGATTTGGTGGTGGATGCGTGTACGAGCTCGA 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 CGATCATTTTATCCAGTTCTTGCCATTGCGATTTGGTGGTGGATGCGTGTACGAGCTCCT 692
Query 688 CGGAAACGTGTTAAAGGAGACACCATGGATCATCTTCGAGATGTGATCAAAGAGAGAGAT 747
|||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 693 CGGAAACGCGTTAAAGGAGAAAACATGGATCATCTTCGAGATGTGATCAAAGAGAGAGAC 752
Query 748 GAGAGGATAGTTCAGCTCTTGCATCAGA-TTGCTCAAATGAATGAGTTACTGTTAAAGCA 806
||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||
Sbjct 753 GAGAGGATAGTTCAGCTTTTGCATCA-ACTTGCTCAAATGAATGAGTTACTGTTAAAGCA 811
Query 807 CCATAAGGACGTTGTATCAAGAAGC---TGATCCATCACAGATTCAAACCTTTTTAGCTT 863
||| |||||| ||||||||||||| |||||||||||| ||||||||| |||||||||
Sbjct 812 CCACAAGGACATTGTATCAAGAAGAAGATGATCCATCACAAATTCAAACCATTTTAGCTT 871
Query 864 ATTGATTCTTTTGTTTCATGTTTATATTATTTCGCAAGTCTCTCTCTTTCTGTAAAATTC 923
||||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct 872 ATTGATTCTTTTGTTTCTTGTTTATATTATTTCGCAAGCCACTCTCTTTCTGTAAAATTC 931
Query 924 TTACGTTTTAATCTCTCAAATGAGAT 949
|| | |||||||||||||| ||||||
Sbjct 932 TTCCATTTTAATCTCTCAATTGAGAT 957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47421034768
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5