BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487610
Length=2264
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07790.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 3024 0.0
> AT5G07790.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G61300.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:2483311-2486361 FORWARD LENGTH=2453
Length=2453
Score = 3024 bits (1637), Expect = 0.0
Identities = 2008/2183 (92%), Gaps = 41/2183 (2%)
Strand=Plus/Plus
Query 102 aaaagaaagaagCTTT-TAGTTAAAATCTCAGAATTTTGGTTATTCTTCGGATTTTAAAA 160
||||||| |||||||| | |||||||||||||||||||| |||||||||||||| ||||
Sbjct 250 AAAAGAACGAAGCTTTGT-GTTAAAATCTCAGAATTTTGATTATTCTTCGGATTGAAAAA 308
Query 161 AACTGTTCCTTTTTTCTAAAGAGTGTGAAAGTGAATGAAGAATGCAGCAGAACAGCTATT 220
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 309 AACTGTTCC-TTTTCCTAAAGAGTGTGAAAGTGAATGAAGAATGCAGCAGAACAGCTTTT 367
Query 221 TCCTT-GGGTCAAACCGTGATACTACGGATGCGAGAA------CTGGCTGGAGTTTGTGT 273
||||| |||| ||||||||| | ||||||||| |||| |||||||||||||||||
Sbjct 368 TCCTTGGGGT-AAACCGTGACATTACGGATGCTAGAACTGCCTCTGGCTGGAGTTTGTGT 426
Query 274 CCTGTAC-AGGACATTGATACGAATAGATACGGCGTCAACGTGAATCTTAATGATACATT 332
||||||| | ||||||||||||| |||||||||||| |||||| || || ||||||||||
Sbjct 427 CCTGTACTA-GACATTGATACGACTAGATACGGCGTGAACGTGCATGTTGATGATACATT 485
Query 333 CTCTTTCTTGTATAGTGATCTTTATCTTAGACAAGTGAAGGAAGCATTGAGACAAACCAT 392
|||||||||||||||||||||||||||||||||||| || |||||||| ||||| |||||
Sbjct 486 CTCTTTCTTGTATAGTGATCTTTATCTTAGACAAGTAAAAGAAGCATTAAGACACACCAT 545
Query 393 GCTTGTACAAGAATCTGTCTTTGAAAGTCAGATCTATGAGCTTCATCGTCTGTATCGGAA 452
||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 546 GCTTGTACATGAATCTGTCTTTGAAAGTCAGATCTGTGAGCTTCATCGTCTGTATCGGAA 605
Query 453 GCAGAAGGAACTGATGATTGAAATGGAGGAAACTCGGCATCATAAGGCCTTGTACTTAAA 512
||||||||| |||||||| ||||||||||||||||| ||| |||||||||||||||| ||
Sbjct 606 GCAGAAGGAGCTGATGATGGAAATGGAGGAAACTCGACATAATAAGGCCTTGTACTTGAA 665
Query 513 TTCTGGTTTGCATATCCCTAGGACACACTGGATGAGTTCGAGCATTTCCGCGTATCAAAC 572
||||||||||| ||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 666 TTCTGGTTTGCCTATCCCTAGAACACACTGGATGAGTTCGAGCATTTCCGCATACCAAAC 725
Query 573 TAGGAATTTGCCTCATGAAGAAGAAGACATTCCTAGACTTGTTGTAGATAACAAGGTTGA 632
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||
Sbjct 726 TAGGAATTTGCCTCATGAAGAAGAAAACATTTCTAGACTTCTTGTAGATAACAAGGTTGA 785
Query 633 CAAGTTTG--AA-AAGAAGGTCTTGGATCTTGAAGTACCGGTTTTTGAGTATAATGATAT 689
||||||| || ||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 786 GAAGTTTGAAAAGAAGAAGGTCTTGGATCTTGAATTACCGGTTTTTGAGTATAGTGATAT 845
Query 690 GCTTGGAGAAGTTCATGAAGCTCAAAACTTTTTGGAAGAGCAATCTCTGAAAAGGATGTC 749
||||| |||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 846 GCTTGAAGAAGTCCATGAAGCTCAAAACTTTTTGGAAGAGCAATCTCTGCAAAGGATGTC 905
Query 750 TCTTGATTCGGGTAAGCAGTTGAGTAAGCTACTACTTGATTTGAATGAACCGGCCAAGAT 809
||| |||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct 906 TCTGGATTCGGGTAAGCAGTCGAGTAAGCTACAACTTGATTTGAATGAACCTGCCAAGAT 965
Query 810 CGAGGAACATTCAGATTATGTGTTCAATCAGTTCCTAAGTACAGTTACATCAAATGAAAT 869
|||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||
Sbjct 966 TGAGGAACATTCAGATTATGTGTTCAATCAGTTTCTAAGTTCAGTTATATCAAATGAAAT 1025
Query 870 TGGAGAAGAGTCTGATACAAAGAATGAGGGAGAAAGTTTAGTAAAAGGTTCCAACGGGAT 929
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1026 TGGAGAAGAGTCTGATACAAAGAATGAGGGAGAAAGTTTAGTAAAAGGTTCCAATGGGAT 1085
Query 930 GGATGAAGCGCAAGAATCTGTCAAATGTCGAGAAGAGTACGTAATTGACTTGAATTTGTC 989
|||||||||||| |||||| |||||||||||||| |||||||||||||||||| ||||
Sbjct 1086 AAATGAAGCGCAAGGATCTGTAAAATGTCGAGAAGATTACGTAATTGACTTGAATATGTC 1145
Query 990 TCCCCTTTCATCCGAAGAAGAAGTACCTATTGTTAAGAAGTTTGAAACCGAGAAACCTCG 1049
||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1146 TCCCCCGTCATCCGAAGAAGAATTAACTATTGTTAAGAAGTTTGAAACCGAGAAACCTCA 1205
Query 1050 AGGGTCTTCTTCAGTTTCATTGCATGGAAAACACGGTTCAGAGCAGCCGCGAGTGGTTGT 1109
|| ||||||||||||||| |||||||||||||||||| ||| ||||||| || ||||||
Sbjct 1206 AGAGTCTTCTTCAGTTTCGCTGCATGGAAAACACGGTTTAGATCAGCCGCAAGGGGTTGT 1265
Query 1110 CCAAGCGCTACCATGTTTAACTAGCACTTTACTTTTGGACAAGCGATATAAGTCATTGAT 1169
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 CCAAGAGCTACCATGTTTAACTAGCACTTTACTTTTGGACAAGCGATATAAGTCATTGAT 1325
Query 1170 GA-GAGGCTCAAGGTCAAGGAAGAAGGTAAAACTTTGTCCAAGCAACATAACCTTCAAAG 1228
|| ||| |||||||||||||| |||||||||| |||||||||||||| |||||||||||
Sbjct 1326 GACAAGG-TCAAGGTCAAGGAACAAGGTAAAACATTGTCCAAGCAACAAAACCTTCAAAG 1384
Query 1229 GCTCAGATCATGACCCGCAGTCGAGTGCTCAAGCCACCTCAGAATCTCAAAGCAATCAAA 1288
||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||
Sbjct 1385 GCTCAGATCATGACCCGCACTCGAGTGGTCAAGCCTCCTCAGAATCTCAAAGCAATCAAA 1444
Query 1289 CGAGTATGGAGAAAGGGAGTTCAAGTTCTTTGTCTGAGGCAAAATCTGTAAAAAAGGGGA 1348
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1445 CGAGTATGGAGAAAGGGAGTTCAAGTTCTTTGTCTGAGGCAAAATCTGCAAAAAAGGGGA 1504
Query 1349 CTAATCTAGGAAAGAAAAGGCATTGTAAACCACAAATGAAATCCAGTAAGGGTCAAAAGG 1408
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1505 CTAGTCTAGGAAACAAAAGGCATTGTAAACCACAAATGAAATCCAGTAAGGGTCAAAAAG 1564
Query 1409 TAGTCGCGAAAAGGAGTGGAAGAGTTAAACGGAAGAAGAGCAGAAGGATATCTCTAGTTA 1468
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1565 TAGTTGCGAAAAGGAGTGGAAGAGTTAAACGGAAGAGGAGCAGAAGGATATCTCTTGTTG 1624
Query 1469 CAGAGGGAAATTATCAAGAAGTATCTGCAGCTAAGGCCATAGTTGATATGTCTAGAAAGT 1528
||||||||||||||||| |||||||||||||| |||| ||||||||||| ||||||||||
Sbjct 1625 CAGAGGGAAATTATCAACAAGTATCTGCAGCTGAGGCTATAGTTGATATTTCTAGAAAGT 1684
Query 1529 CTGCTCGAGAAACGGCTGATTGTATCACTTCTTTAAGCAGAAATCTACTTTGGTTCGCCG 1588
||| ||||||||| |||| |||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1685 CTGGTCGAGAAACTGCTGCTTGTATCACTTCCTTAAGCAAAAATCTACTTTGGTTCGCCG 1744
Query 1589 AGATTTCTTCTTCTGTTGCTGAGGACTACAAAACAGA-ATTTTTGGAGCTGACAGAGAAG 1647
| |||||||| || |||||||||||| |||||| ||| | || | |||||||||| |||
Sbjct 1745 ACATTTCTTCCTCGGTTGCTGAGGACAACAAAATAGACACATT-GCAGCTGACAGAAAAG 1803
Query 1648 AAGCTAGAGGAGCAGGAGACAGATCTGAGATTGAACTCTTTAGACAACATAGCAGCAGTC 1707
|||||||||||||| |||||| |||| || |||||||||| ||||||||| |||||||||
Sbjct 1804 AAGCTAGAGGAGCACGAGACAAATCTAAGGTTGAACTCTTCAGACAACATTGCAGCAGTC 1863
Query 1708 TCCAGCATTGTCCTTAAAAAGCAGAGGAGAAGCCGAGCCTGGCAGGGGAAGCGGAAATGC 1767
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1864 TCCAGCATTGTCCTTAAAAAGCAGAGGAGAAGCCGAGCCAGGCAAGGGAAGCGGAAATGC 1923
Query 1768 AAAGATGACCAGCACGATGATAACCCGAGTTTAGGA-ACATTTTCAGAATGTGAAGCCAA 1826
|||||||||||||| || | | | ||| |||||||||||||| ||||| ||
Sbjct 1924 CAAGATGACCAGCAC-AT--T-----G--T---GGACACATTTTCAGAATGGGAAGCTAA 1970
Query 1827 TGAGGATCTGCAGGTAATAGGAAAGTTAATTGAAGCGTCTGAATTAAAATGGAATTG-TG 1885
||| ||||||||||||||||||||| |||| ||||||||||| |||||||||||||| ||
Sbjct 1971 TGATGATCTGCAGGTAATAGGAAAGCTAATGGAAGCGTCTGACTTAAAATGGAATTGCTG 2030
Query 1886 GGTTCCCCAAGAACAAGCGCAGAAGCTCTCCTCCTAAACCAATAGATGCTTTCACTTCCT 1945
| ||||| ||||||||| ||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 2031 G-TTCCCTAAGAACAAGAGCAAAAGCTCTCCTCCTAAACCAGTAGATGCTTTCACTTCCT 2089
Query 1946 CGGGGGAAGCAAAAACGGGCGTTGACTGGGGAGCCTTAAAAAAGCGAAGACGAGGCTCTA 2005
| ||||||| |||||| ||||| || |||||||| |||| ||||||||||||||||||||
Sbjct 2090 CCGGGGAAGAAAAAACAGGCGTCGATTGGGGAGCATTAAGAAAGCGAAGACGAGGCTCTA 2149
Query 2006 GAATACCTGCTGCTGATTTTAAGCATATGATCATCAACCAAGTAGTATAGCCAAACTAAA 2065
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2150 GAATTCCTGCTGCTGATTTTAAGCATATGATCATCAACCAAGTAGTATAGCCAAACTAAA 2209
Query 2066 GAGGTAATTTACATTACTTACCATAGTTTGCTTCATGTTTTTTCGGAGAATCAAGAATCT 2125
||||||||| ||| ||||| | ||||||||||||||||||||| ||||||||||||||||
Sbjct 2210 GAGGTAATT-ACAATACTTGCTATAGTTTGCTTCATGTTTTTTTGGAGAATCAAGAATCT 2268
Query 2126 TACGGAAGATGATGCTTTTTGTAACAAGTCTTGTTCTAGATATGAAGACTACATAGGAGA 2185
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2269 TACGGAAGATGATGATTTTTGTAACAAGTCTTGTTCTAGAAATGAAGACTACATAGGAGA 2328
Query 2186 T-AT-T-AAACTGTTAGAATATCAGTTCATCAAAAGGCAATGAATCTGT-TTTAAACTGG 2241
| || | ||||||||||||||||||||||||||||||||| |||| ||| ||||||||||
Sbjct 2329 TGATATTAAACTGTTAGAATATCAGTTCATCAAAAGGCAAAGAATGTGTGTTTAAACTGG 2388
Query 2242 AGATGGTACTGAAGAAGTTATAC 2264
|||||||||||||||||||||||
Sbjct 2389 AGATGGTACTGAAGAAGTTATAC 2411
Score = 134 bits (72), Expect = 5e-30
Identities = 92/102 (90%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 1 TCTCCAAAGATAATGGCCCAGCAGATCTCGGATACATAAAAGATCCCTGTTCTTTTGGTG 60
||||||||||||||||||||||||||||| |||| ||| ||||||||| ||||||||||
Sbjct 91 TCTCCAAAGATAATGGCCCAGCAGATCTCAGATATATAGAAGATCCCTCTTCTTTTGGTC 150
Query 61 CACTTTCTCTTTTTTGCATTTTCCCGATaaaagaaaaagaaa 102
||||||| ||| ||| ||||||||||| |||| |||||||||
Sbjct 151 CACTTTCCCTTGTTTACATTTTCCCGAGAAAACAAAAAGAAA 192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112348819710
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5