BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487613
Length=1953
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07820.1 | Symbols: | Plant calmodulin-binding protein-rela... 2647 0.0
> AT5G07820.1 | Symbols: | Plant calmodulin-binding protein-related
| chr5:2498749-2501209 REVERSE LENGTH=2063
Length=2063
Score = 2647 bits (1433), Expect = 0.0
Identities = 1824/2002 (91%), Gaps = 70/2002 (3%)
Strand=Plus/Plus
Query 1 AGaaaaaaaaaaTGTCAAAAGATTCTCTCCTTCCCTCTCCTTC-TCTCAATTAAAAGATT 59
|||| |||||| ||||||||||||||||||||||||||| ||| | |||||| |||||||
Sbjct 2 AGAAGAAAAAATTGTCAAAAGATTCTCTCCTTCCCTCTCTTTCGT-TCAATT-AAAGATT 59
Query 60 TGTTGACCTCATTTGTGTTTCTTC---T--AA---AACTTTCTCCTTTTTCTTCTGAAAT 111
|||||||||||||||| ||||||| | || |||||||||||||||||||| ||||
Sbjct 60 TGTTGACCTCATTTGTTTTTCTTCTAATCAAATCTAACTTTCTCCTTTTTCTTCTCAAAT 119
Query 112 TCTCTAAT--CACTCTTCATCCTCTTCTGGGCAAAACTATATAGTATTTTGTTCTTCAGC 169
|||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 120 TCTCTAATCACACTCTTCATCCTCTTCTGGACAAAACTATTTAGTATTTTGTTCTTCAGC 179
Query 170 TTCAATTCTCTAAGAG-----tttttttttttGGTAAAATAATTCTCT-AAGAGTTGGAT 223
|||| ||||||||||| ||||||||||||| ||||||||| | | ||||||||| |
Sbjct 180 TTCAGTTCTCTAAGAGTTTTTTTTTTTTTTTTGGGAAAATAATTAT-TGAAGAGTTGGGT 238
Query 224 GATCTATAAAGTTGTCGTTGTAATAAGTTGCAATGTCTGAGGAGAATATTTCACAAGTTG 283
|||| ||||| | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GATC--TAAAG-T-T-GTTGTAATAAGTTGCAATGTCTGAGGAGAATATTTCACAAGTTG 293
Query 284 ATGACAAGTGTTGTTTGGATGATGCAAACCCCATGGAGATCTCTGTTGAAACTATTCCTG 343
||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| ||||
Sbjct 294 ATGACAAGTGTTGTTTGGATGATGCAAACCCAATGGAGATATCTGTGGAAACTATCCCTG 353
Query 344 TAGTGGATGAGGAAGTTCAA-G-GA-GATGATGTAATTCTTCCAGCTGCAGAGACCAATC 400
|||||||||||||||||||| | || |||||||| ||| ||||||||||||||||||||
Sbjct 354 TAGTGGATGAGGAAGTTCAAGGAGATGATGATGTTCTTCATCCAGCTGCAGAGACCAATC 413
Query 401 ATGCGAATTTGAGGCGGTGTT-----CGA----CAGATAAAAAGACAGGTAAAGCTCAGG 451
|||||| ||||| ||||| || ||| ||||||||||||||| ||||||||||
Sbjct 414 ATGCGAGTTTGAAGCGGTATTCAACACGAGTTTTAGATAAAAAGACAGGCAAAGCTCAGG 473
Query 452 TTCAAACCCGTTACCGTGGGAACCAAACGAGTTCAACTCATGATCTATGTAAACATGGGA 511
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 474 TTCAAACCCGTTACCGTGGGAACCAAACGAGTTCTACTCATGATCTATGTAAACATGGGA 533
Query 512 AGAGGCGTGAGGAAGACTTGGTGATCAAACCGTGGAAGTTGGTTAAGAAAAAGAATATTG 571
|||||||||||||||| |||||||||||||| |||||| ||| ||||||||||||| |||
Sbjct 534 AGAGGCGTGAGGAAGATTTGGTGATCAAACCATGGAAGGTGGCTAAGAAAAAGAATGTTG 593
Query 572 AAAGTGGAGATTTGGGGAAAGGTGAGACTCTGAGGAAGTCCTTGGGAAATGTTTCTAAAC 631
| ||||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||
Sbjct 594 ACAGTGGAGATTTGGGGAAGGGTGAGACTTTGAGGAAGTCCTTGGGGAATGTTTCTAAAC 653
Query 632 CGGACAAGTCATTATTGCAGGCTGCAAAGAGAGAAGCTGCTGGTGAGGTTGTCAAATCTT 691
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 654 CGGACAAGTCATCATTGCAGGCTGCAAAGAGAGAAGCTGCTGGTGAGGTTGTCAAATCTT 713
Query 692 GTGATGGTTTACGCGTTAA-AAGAAGTGAAACCAAGAGTACTAGTCCAAGTGTTTCAGCT 750
|||||||||||| |||||| ||| ||||||||||||||||||||||| ||||||||| ||
Sbjct 714 GTGATGGTTTACACGTTAAGAAG-AGTGAAACCAAGAGTACTAGTCCGAGTGTTTCACCT 772
Query 751 GTTGTGAGAATGGCCAAGAAGACCGATCTTGATGT---TAAGGTTTCAAAGATCAGCCag 807
|||||||||| || ||||||||| |||||| ||| ||||| ||||| ||||||||||
Sbjct 773 GTTGTGAGAACGGTCAAGAAGACTAATCTTGTTGTAAATAAGGCTTCAAGGATCAGCCAG 832
Query 808 aacaagaa-tcctgaagagaatcttttttcaaagaatttgaagaataaagagaagaagaa 866
||||| || |||| ||||| ||| |||| |||||||||||||| ||||||||| |||
Sbjct 833 AACAA-AAGTCCTAAAGAGGATC---TTTCGAAGAATTTGAAGAACAAAGAGAAGGGGAA 888
Query 867 gaTCGATGAACTGGTTAGATGTACTGATGATGTTTTGGAGACGACAAATCTTGATGTTAA 926
||| | ||||| ||||||||| ||||||||| || |||| |||| ||||||| |||||
Sbjct 889 GATTGTTGAACCGGTTAGATG---TGATGATGTATTAGAGAAGACAGATCTTGAAGTTAA 945
Query 927 GAAGGTTTCAAGGATCAGCGAGAACAAGAATTCTAATA-AGGATATTTTGAGGAACAAAG 985
|||||||||||||||||| |||||||||| |||||| | |||||| | ||| ||||||||
Sbjct 946 GAAGGTTTCAAGGATCAGTGAGAACAAGAGTTCTAA-AGAGGATACTCTGAAGAACAAAG 1004
Query 986 AGAAGACGAAGATTGATGAACCGGTTAGATGTGATGAT-TCATTGGAGAAGACAAGTCTT 1044
||||| ||||||| ||||| || ||||||||||||||| | ||||||||| || ||||||
Sbjct 1005 AGAAGGCGAAGATCGATGAGCCAGTTAGATGTGATGATGT-ATTGGAGAAAACGAGTCTT 1063
Query 1045 GATCCTAAGAAGGTTCCAAGGATCAGCGAGAAGAAGAATT-TGAAAGAGGAACGTTTAAA 1103
||| || |||||||| |||||||||||||||| ||||||| | |||||||||||||||||
Sbjct 1064 GATGCTCAGAAGGTTTCAAGGATCAGCGAGAACAAGAATTCT-AAAGAGGAACGTTTAAA 1122
Query 1104 GAATCTCAAGAACAAAGAGAAGACGAACATTGATGAACCAGTTATATCTGATGATGCATT 1163
|||||| |||||||||||||||||||||||||||||||| |||| | |||||||||| |
Sbjct 1123 GAATCTGAAGAACAAAGAGAAGACGAACATTGATGAACCGGTTAGACCTGATGATGCGGT 1182
Query 1164 GGAGAAGACATTGTATGTTGTTGAATCTAGTATT--G-AGAAGAAGAAGAAGATGAGCAT 1220
||||||||||||||||||||||||||||||| || | |||||||||||||||||||||
Sbjct 1183 GGAGAAGACATTGTATGTTGTTGAATCTAGTGTTGAGAAGAAGAAGAAGAAGATGAGCAC 1242
Query 1221 CAAAAGTGTTAAG---AGTGAGATTCAGCAATCTTCTGAGAAGAAAATCTTAAGAAGCAG 1277
||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 1243 CAAAAGTGTTAAGATCAGTGAGACTCAGCAATCTTCTGAGAAGAAAATCATAAGAAGCAC 1302
Query 1278 CGGAAAGAAAAGTCTTAGCTTATTACCGTCTTTGTCC-CCATTCTCGGAGGTGGTTACAA 1336
||| ||||||||||||||||||||||| |||||| || ||| ||| ||||||||||||
Sbjct 1303 CGGCAAGAAAAGTCTTAGCTTATTACCATCTTTG-CCTCCACCCTCAGAGGTGGTTACAG 1361
Query 1337 GGTCAGATCCTAGGCCAATAAGACAGACTACTTCCAGGTCCAAGACTGGTTTGTCTGAGA 1396
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1362 GGTCAGATCCTAGGCCAATAAGACAGACTACTTCCAGGTCCAAGACTAGTTTGCCTGAGA 1421
Query 1397 AGGAACAGAGTGGTTCTGCAAATCTTGTTACTAATCCGAAACCCGAAAGCAAGATTAGGC 1456
|| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 1422 AGAAACAGAGTGGTTCTGCTAATCTTGTTACTAATCCGAAACCCGAAAGCAAGATTAGAC 1481
Query 1457 C-AAAGAGGATTGGTTTAAAGGTTACTCCACCTCCTCCTCCAACGAAGCAGCAAATGAAT 1515
| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1482 CGAAA-AGGATTGGTTTAAAGGTTACTCCACCTCCTCCTCCAACAAAGCAGCAAATGAAT 1540
Query 1516 TTCAAGAAAGGGAAAGTTCTTGAACCAAAACCAGAAGATTCCACTACAACATCGATCAAA 1575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1541 TTCAAGAAAGGGAAAGTTCTTGAACCAAAACCAGAAGATTCCACTACAACATCGATCAAA 1600
Query 1576 TTCAAGAAGAGAGTTGTTcaagaaccaaaagtcag---aagtgatgtgaacaaaaagaag 1632
|||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct 1601 TTCAAGAAGATAGTTGTTCAAGAACCAAAACTCAGAACAAGTGATGTGAACAAAAAGAAG 1660
Query 1633 aagaacctgaaagacaaaagagaagGTGTTGGGAAGATTAACGGTGAAGGTAAACGAGAG 1692
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 AAGAGCCTGAAAGATAAAAGAGAAGGTGTTGGGAAGATTAACGGTGAAGGTAAACGAGAG 1720
Query 1693 AAGGTTGTTTTGAGGCATAGAAAAGTGGAAGTGAAGAAGAAATTGCAGACACTTTTCAAT 1752
|| |||||| |||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1721 AAAGTTGTTCTGAGACACAGAAAAGTGGAAGTGAAGAAGAAATTGCAGACACTTTTCAAT 1780
Query 1753 AATGTGATTGAAGAGACTGTGAATAAGCTTGAAGAAGTGAGGAAGAGTAAAGTTAAAGCA 1812
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1781 AATGTGATTGAAGAGACTGTGAATAAGCTTGAAGAAGTGAGGAAAAGTAAAGTTAAAGCA 1840
Query 1813 TTGGTTGGTGCTTTTGAAACTGTAATCTCTCTTCAAGATAACAATAGAACATCTCAGAAG 1872
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1841 TTGGTTGGTGCTTTTGAAACTGTTATCTCTCTTCAAGATAACAACAGAACATCTCAGAAG 1900
Query 1873 AAGAAGATTAAGAGCAAATCCACATCTTCACAAGTCGTTGAAGGCTGCTA-GTCCTTGAG 1931
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1901 AAGAAGATTCAGAGCAAATCCACATCTTCACAAGTCGTTGAAGGCTGCTAAGTCCTTGAG 1960
Query 1932 AAAGAGATCAAAGTTGTGAATT 1953
||||||||||||||||||||||
Sbjct 1961 AAAGAGATCAAAGTTGTGAATT 1982
Score = 165 bits (89), Expect = 1e-39
Identities = 169/205 (82%), Gaps = 16/205 (8%)
Strand=Plus/Plus
Query 845 tgaagaataaagagaagaagaagaTCGATGAACTGGTTAGATGTACTGATGATGTTTTGG 904
||||||| ||||||||| |||||||||||| | |||||||| ||||||||| ||||
Sbjct 993 TGAAGAACAAAGAGAAGGCGAAGATCGATGAGCCAGTTAGATG---TGATGATGTATTGG 1049
Query 905 AGACGACAAATCTTGATGTTAAGAAGGTTTCAAGGATCAGCGAGAACAAGAATTCTAATA 964
||| || | |||||||| | ||||||||||||||||||||||||||||||||||||| |
Sbjct 1050 AGAAAACGAGTCTTGATGCTCAGAAGGTTTCAAGGATCAGCGAGAACAAGAATTCTAA-A 1108
Query 965 -AGGATAT-TTT---GA----G--GAACAAAGAGAAGACGAAGATTGATGAACCGGTTAG 1013
|||| | ||| || | |||||||||||||||||| |||||||||||||||||
Sbjct 1109 GAGGA-ACGTTTAAAGAATCTGAAGAACAAAGAGAAGACGAACATTGATGAACCGGTTAG 1167
Query 1014 ATGTGATGATTCATTGGAGAAGACA 1038
| ||||||| | |||||||||||
Sbjct 1168 ACCTGATGATGCGGTGGAGAAGACA 1192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96736450215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5