BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487615
Length=724
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07842.1 | Symbols: CPuORF16 | conserved peptide upstream op... 728 0.0
AT5G07840.1 | Symbols: | Ankyrin repeat family protein | chr5:... 728 0.0
> AT5G07842.1 | Symbols: CPuORF16 | conserved peptide upstream
open reading frame 16 | chr5:2506634-2508435 REVERSE LENGTH=1376
Length=1376
Score = 728 bits (394), Expect = 0.0
Identities = 458/490 (93%), Gaps = 0/490 (0%)
Strand=Plus/Plus
Query 235 ATGCTCCAAGAGCAGCCAGTTGCATTGTCCTTCCGGCGTAACTCATTTAGACGCCGGTCC 294
||||||||||||||||| ||||| |||||||| |||| |||||||||||| |||||||||
Sbjct 719 ATGCTCCAAGAGCAGCCGGTTGCGTTGTCCTTTCGGCCTAACTCATTTAGGCGCCGGTCC 778
Query 295 ATGAAAACGGGTGTTGACAGAGACGATAGGGGCTGGACTCAGCTCCACATCAAAGCTTGT 354
||| ||||||||||||||||||| || ||||| ||||||||||| |||||||||||| ||
Sbjct 779 ATGGAAACGGGTGTTGACAGAGATGACAGGGGGTGGACTCAGCTTCACATCAAAGCTCGT 838
Query 355 AAAGGCGATCTCAAAGCTGTTAAAGAGCTCCTTGACCAAGGAGCTGACGTGAACGCTTTA 414
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 839 GAAGGCGATCTCAAAGCTGTTAAAGAGCTCCTTGACCAAGGAGCAGACGTGAACGCTCTA 898
Query 415 GCGTGTGGACCTAAATCAAAAGGAATGACTCCTCTTCACCTTGCAGCCAAAGGAGGTCAC 474
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 899 GCTTGTGGACCTAAATCAAAAGGAATGACTCCTCTTCACCTTGCTGCCAAAGGAGGTCAC 958
Query 475 ATTGAAGTCATGGACTTGCTTCTTGAACATGGAGCCAATATTGAAGCTAGAACCTCGGGT 534
|| ||||| ||||||||||||||||||| ||||||||| || |||||||||||||| |||
Sbjct 959 ATCGAAGTTATGGACTTGCTTCTTGAACGTGGAGCCAACATGGAAGCTAGAACCTCTGGT 1018
Query 535 GCTTGTGGCTGGACTCCTCTCCATGCTGCAGCTAAAGAACGGAAGAGAGAAGCTGTCAAG 594
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1019 GCTTGTGGCTGGACTCCTCTCCATGCTGCAGCTAAAGAACGGAAAAGAGAAGCTGTCAAG 1078
Query 595 TTTCTTGTGGAGAACGGAGCTTTCTTACCCGATGATATAACCGACTGTAGATTCAACCCG 654
|||||||||| |||||| ||||||||||| ||||||||||||||| |||| |||||||||
Sbjct 1079 TTTCTTGTGGGGAACGGTGCTTTCTTACCTGATGATATAACCGACAGTAGGTTCAACCCG 1138
Query 655 CCGGTTCAGTACTGTCACGGCTTGGAATGGGCTTACGAGGAGAGGAAGAAACTCAGTGGA 714
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 1139 CCGGTTCAGTACTGTCACGGCTTGGAATGGGCTTATGAAGAGAGGAAGAAACTCAGTGAA 1198
Query 715 GAGACTTCTT 724
|| |||||||
Sbjct 1199 GATACTTCTT 1208
Score = 337 bits (182), Expect = 1e-91
Identities = 214/229 (93%), Gaps = 3/229 (1%)
Strand=Plus/Plus
Query 7 TCTCTTTACCCATTGATCCAGGCTTTTTCTGATTTCTCTTAGTTCCTAGAAACCATTAGG 66
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 272 TCTCTTTACCCATTGATCCAGGCTTTTTCTGATTTCTCTTTGTTCCTAGAAACCATTAAG 331
Query 67 CTCCTATTCT-TTTCAAGTTGATGCTTGTTTTCTCTTCACTGTCTATGACTCCAATTGTG 125
|||||| || |||| |||||||||| || |||||||||||||||||||||||| |||||
Sbjct 332 CTCCTA-CCTCTTTCTAGTTGATGCTCGTGTTCTCTTCACTGTCTATGACTCCAGTTGTG 390
Query 126 ATCCCTCAAAATCTCCGTGTCTTTGGCCCTGGTTTGAATCCCTCTTTCCCTTACTGCATT 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 391 ATCCCTCAAAATCTCCGTGTCTTTGGCCCTGGTTTGAATCCCTCTTTCCCTTACTGCATT 450
Query 186 TCTAATCACTCCCCTTGATTTTAGTTGCTTCATTTCAACTGAATCATCT 234
||||||||| ||||||||| ||||||| |||| ||||||||||||||
Sbjct 451 GCTAATCACTTCCCTTGATTG-AGTTGCTCCATTCCAACTGAATCATCT 498
> AT5G07840.1 | Symbols: | Ankyrin repeat family protein | chr5:2506656-2508373
REVERSE LENGTH=1292
Length=1292
Score = 728 bits (394), Expect = 0.0
Identities = 458/490 (93%), Gaps = 0/490 (0%)
Strand=Plus/Plus
Query 235 ATGCTCCAAGAGCAGCCAGTTGCATTGTCCTTCCGGCGTAACTCATTTAGACGCCGGTCC 294
||||||||||||||||| ||||| |||||||| |||| |||||||||||| |||||||||
Sbjct 657 ATGCTCCAAGAGCAGCCGGTTGCGTTGTCCTTTCGGCCTAACTCATTTAGGCGCCGGTCC 716
Query 295 ATGAAAACGGGTGTTGACAGAGACGATAGGGGCTGGACTCAGCTCCACATCAAAGCTTGT 354
||| ||||||||||||||||||| || ||||| ||||||||||| |||||||||||| ||
Sbjct 717 ATGGAAACGGGTGTTGACAGAGATGACAGGGGGTGGACTCAGCTTCACATCAAAGCTCGT 776
Query 355 AAAGGCGATCTCAAAGCTGTTAAAGAGCTCCTTGACCAAGGAGCTGACGTGAACGCTTTA 414
||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 777 GAAGGCGATCTCAAAGCTGTTAAAGAGCTCCTTGACCAAGGAGCAGACGTGAACGCTCTA 836
Query 415 GCGTGTGGACCTAAATCAAAAGGAATGACTCCTCTTCACCTTGCAGCCAAAGGAGGTCAC 474
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 837 GCTTGTGGACCTAAATCAAAAGGAATGACTCCTCTTCACCTTGCTGCCAAAGGAGGTCAC 896
Query 475 ATTGAAGTCATGGACTTGCTTCTTGAACATGGAGCCAATATTGAAGCTAGAACCTCGGGT 534
|| ||||| ||||||||||||||||||| ||||||||| || |||||||||||||| |||
Sbjct 897 ATCGAAGTTATGGACTTGCTTCTTGAACGTGGAGCCAACATGGAAGCTAGAACCTCTGGT 956
Query 535 GCTTGTGGCTGGACTCCTCTCCATGCTGCAGCTAAAGAACGGAAGAGAGAAGCTGTCAAG 594
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 957 GCTTGTGGCTGGACTCCTCTCCATGCTGCAGCTAAAGAACGGAAAAGAGAAGCTGTCAAG 1016
Query 595 TTTCTTGTGGAGAACGGAGCTTTCTTACCCGATGATATAACCGACTGTAGATTCAACCCG 654
|||||||||| |||||| ||||||||||| ||||||||||||||| |||| |||||||||
Sbjct 1017 TTTCTTGTGGGGAACGGTGCTTTCTTACCTGATGATATAACCGACAGTAGGTTCAACCCG 1076
Query 655 CCGGTTCAGTACTGTCACGGCTTGGAATGGGCTTACGAGGAGAGGAAGAAACTCAGTGGA 714
||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| |
Sbjct 1077 CCGGTTCAGTACTGTCACGGCTTGGAATGGGCTTATGAAGAGAGGAAGAAACTCAGTGAA 1136
Query 715 GAGACTTCTT 724
|| |||||||
Sbjct 1137 GATACTTCTT 1146
Score = 337 bits (182), Expect = 1e-91
Identities = 214/229 (93%), Gaps = 3/229 (1%)
Strand=Plus/Plus
Query 7 TCTCTTTACCCATTGATCCAGGCTTTTTCTGATTTCTCTTAGTTCCTAGAAACCATTAGG 66
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 210 TCTCTTTACCCATTGATCCAGGCTTTTTCTGATTTCTCTTTGTTCCTAGAAACCATTAAG 269
Query 67 CTCCTATTCT-TTTCAAGTTGATGCTTGTTTTCTCTTCACTGTCTATGACTCCAATTGTG 125
|||||| || |||| |||||||||| || |||||||||||||||||||||||| |||||
Sbjct 270 CTCCTA-CCTCTTTCTAGTTGATGCTCGTGTTCTCTTCACTGTCTATGACTCCAGTTGTG 328
Query 126 ATCCCTCAAAATCTCCGTGTCTTTGGCCCTGGTTTGAATCCCTCTTTCCCTTACTGCATT 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 329 ATCCCTCAAAATCTCCGTGTCTTTGGCCCTGGTTTGAATCCCTCTTTCCCTTACTGCATT 388
Query 186 TCTAATCACTCCCCTTGATTTTAGTTGCTTCATTTCAACTGAATCATCT 234
||||||||| ||||||||| ||||||| |||| ||||||||||||||
Sbjct 389 GCTAATCACTTCCCTTGATTG-AGTTGCTCCATTCCAACTGAATCATCT 436
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35113668753
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5