BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487619
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07880.1 | Symbols: SNAP29, ATSNAP29 | synaptosomal-associat... 948 0.0
> AT5G07880.1 | Symbols: SNAP29, ATSNAP29 | synaptosomal-associated
protein SNAP25-like 29 | chr5:2515587-2516694 REVERSE LENGTH=756
Length=756
Score = 948 bits (513), Expect = 0.0
Identities = 697/782 (89%), Gaps = 28/782 (4%)
Strand=Plus/Plus
Query 1 ATGGCTGCTAAGAATTTCAGCTTGAACCCTTTTGATGATACTGATGATGAGAAGGAGGAG 60
|||||| ||||||||| ||||| |||||| | | | |||||||||| | |||||
Sbjct 1 ATGGCTCCTAAGAATTCCAGCTGGAACCC---T--T--T--TGATGATGAG-A--AGGAG 48
Query 61 GCTGCTAAGAATTTCAGTTTGAACCCTTTtgatgatgatgatgatgatgatAAGGAGGTT 120
|||||||||| ||||||||||||||| ||| |||||||||||||||||| |||||||||
Sbjct 49 GCTGCTAAGAGTTTCAGTTTGAACCC-TTT--TGATGATGATGATGATGACAAGGAGGTT 105
Query 121 GAGAAAACATTCACTTCATCGTTGAAGTTCTC-GGATGCAAAGGAGAACCACCAGACGGT 179
||||||| |||||||||||| |||||| ||| ||| | ||| ||| | ||||||||||
Sbjct 106 GAGAAAAGATTCACTTCATCCTTGAAGCCCTCGGGAGGTAAA-GAG-A--ACCAGACGGT 161
Query 180 TCAAGAACTTGAGAGCTACGCTGTGTACGAGTCTGAGGAAACAACCAAAACCGTAAAAGG 239
||||||||||||||||||||||||||| | |||||||||||||| ||||||||| ||||
Sbjct 162 TCAAGAACTTGAGAGCTACGCTGTGTATAACTCTGAGGAAACAACGAAAACCGTACAAGG 221
Query 240 GTGTTTGAAAGTTGCTGAAGAGATTAGATGTGATGCTACTAAAACTTTGGTTATGTTGAA 299
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 222 GTGTTTGAAAGTTGCTGAAGAGATTAGATGTGATGCTTCTAAAACTTTGGTTATGTTGAA 281
Query 300 TGACCAAGGAGATCAAATTACTAGAACACACCATAAGGCGGTTGATATCGATCATCATCT 359
||| ||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||
Sbjct 282 TGAACAAGGAGATCAAATTACTAGAACACACCAGAAGACGGTTGATCTCGATCATCATCT 341
Query 360 TAGTCGGGGTGAGAAGCTTCTTGGACGCCTTGGAGGCATTTTTTCAAGGACTTGGAAGCC 419
| ||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 342 TTCTCGGGGTGAGAAGATTCTTGGACGCCTCGGAGGTGTTTTTTCAAGGACTTGGAAGCC 401
Query 420 AAAGAAGACTCGTTCCATAACTGGTCCTGTCAGAACTAGAGGTGATTCCCCTAAGAGAAG 479
||||||| ||||||| |||||||| ||||||| ||| | ||||||||| ||||||||||
Sbjct 402 AAAGAAGTCTCGTTCTATAACTGGCCCTGTCATAACCAAAGGTGATTCACCTAAGAGAAA 461
Query 480 AGTTATCAACTTAAAGACTAGGGAAAATCTGGGACTGAACCATTCACTCAAACCAAAATC 539
||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 462 AGTTATCGACTTAAAGACTAGGGAAAAGCTGGGACTGAACCCTTCACTCAAACCAAAATC 521
Query 540 AAGAACACTTGCTGAATCCGTTGATGCTTATCAGAAAACACAGATGGAGATTGCAAAGCA 599
|| ||||||| ||||| |||||||||||||||||||||||||||| | ||||||||
Sbjct 522 AAAAACACTTCCTGAAGCCGTTGATGCTTATCAGAAAACACAGAT-----T-GCAAAGCA 575
Query 600 AGATGAAGTCCTTTCCAACTTAAGCGATCTTCTTGGCGAGCTGAAAAATATGGCAGTGGA 659
|||||||| |||| || ||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 576 AGATGAAGCCCTTACCGACTTAAGCGCTCTTCTTGGCGAGTTGAAAAATATGGCAGTGGA 635
Query 660 CATGGGAACAGCAATCGAAAGTGAAAACCA-TGGACTAGATCATCTTCAAGACGATGTTG 718
||||||||||||||||||||| | |||||| || ||| |||||||||||||| ||| ||
Sbjct 636 CATGGGAACAGCAATCGAAAG-GCAAACCAATGAACTGGATCATCTTCAAGATAATGCTG 694
Query 719 ATGAGCTTAACTACAGAGTAAAGCAATCGAACCAACGGGCTGGCCGTTTACTCCGGAAGT 778
||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||||
Sbjct 695 ATGAGCTCAACTACAGAGTTAAGCAATCGAACCAACGGGCTCGCTATTTACTCCGGAAGT 754
Query 779 AA 780
||
Sbjct 755 AA 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37926780985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5