BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487621
Length=1546
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07890.1 | Symbols: | myosin heavy chain-related | chr5:251... 2119 0.0
> AT5G07890.1 | Symbols: | myosin heavy chain-related | chr5:2517381-2519992
REVERSE LENGTH=1666
Length=1666
Score = 2119 bits (1147), Expect = 0.0
Identities = 1283/1349 (95%), Gaps = 7/1349 (1%)
Strand=Plus/Plus
Query 1 GGAGGATAAGCAAATTCAAAAATCATTTCTCCGATCAAATTCGCCGTCGGAATTATCTCA 60
||||||| | |||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 1 GGAGGATCATCAAATTCAAACATCATTTCTCCG-GCAAATTCGCCGTCGGAATTATCTCA 59
Query 61 GAGAGAAATTGAGCTGCGAAGTGGTGATTTTTGTATTTAAATGTCGAGTAGCTCGGGAAG 120
||||| ||||||||||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct 60 GAGAGGGATTGAGCTGCGAAGTGGTGATTTTTGTCTCTAAATGTCGAGTAGCTCGGGGAG 119
Query 121 TTTCTCGGGAAGCAGTAGCTCGGCATGTAGTTCCAGAAGTGATTGCGAGAACTCGTTTGA 180
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 120 TTTCTCGGGAAGCAGTAGCTCGGCGTGTAGTTCCAGAAGTGATTGTGAGAACTCGTTTGA 179
Query 181 TGTTGAAGAACTTTTACAGATTGGGACAACACGCAGGGAGCTAAGGAAACAAAAGGACAT 240
||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 180 TGTTGAAGATCTTTTGCAGATTGGGACTACACGCAGGGAGCTAAGGAAACAAAAGGACTT 239
Query 241 GTTGAGAGAATCGCAGCCCCATAGTATCGAACTAGTCAGAAGGTTGGAACTCCACACGAA 300
| |||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 240 GCTGAGAGAATCACAGCCCCATAGTATTGAACTAGTCAGAAGGTTGGAACTTCACACGAA 299
Query 301 GTCATTATCGGAATCTCGCTTAGAAGACACAGCACGAATTCAGATGATGGAGAAAGAATT 360
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 300 GTCATTATCTGAATCTCGCTTAGAAGACACAGCAAGAATTCAGATGATGGAGAAAGAATT 359
Query 361 ATTGAATTGCTATAAGGAAATTGATTACTTGCGAGATCAACTAATTTTCAGAAGCAAGGA 420
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 360 ATTGAATTGCTATAAGGAAATTGATTACTTGCGGGATCAACTAATTTTCAGAAGCAAGGA 419
Query 421 AGTGAATTATCTCAATGAACATCTGCACGATCTTGAATTCAAATTGGCTGAATCAAGGAA 480
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 420 AGTGAATTATCTCAATGAACATCTGCACGATCTTGAGTTCAAATTGGCTGAATCAAGGAA 479
Query 481 TCTGGAAGAGGAAGTTAACTCTTTAAGAGATGAGTTGTGTATGTCTAAATCTGAGCATTT 540
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 480 TCTGGAAGAAGAAGTTAACTCTTTAAGAGATGAGTTGTGTATGTCTAAATCCGAGCATTT 539
Query 541 GTTGTTGTTGCAAGAACTCGAGAGCAAAGAAATAGAGCTACAGTGTTCGTCTCTTTCCTT 600
||||||||||||||||||||||||||| |||||||| |||||||||||||||||| | ||
Sbjct 540 GTTGTTGTTGCAAGAACTCGAGAGCAAGGAAATAGAACTACAGTGTTCGTCTCTTACATT 599
Query 601 GGAGAAACTGGAGGAGACCATGTCATCCTTAACATTAGAGTCCTTGTGCGAAATAGAAAG 660
|||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 600 GGAGAAACTGGAAGAGACCATCTCGTCCTTAACATTAGAGTCCTTGTGCGAAATAGAAAG 659
Query 661 CATGAAGCTTGATATAACAGCGTTGGAGCAAGCACTCTTTGATGCAATGAAAATCCAAGA 720
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 660 CATGAAGCTTGATATAACAGCGTTGGAGCAAGCACTCTTTGACGCTATGAAAATCCAAGA 719
Query 721 AGAAAGCATCCAAGAAAAAGATCAATTAAAAGGAATAATCGAAGAGTCCCAGTTTCAGTC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AGAAAGCATCCAAGAAAAAGATCAATTAAAAGGAATAATCGAAGAGTCCCAGTTTCAGTC 779
Query 781 TCAAAGGGCACAAGAGAATGTCAAATATATCGAAAAGAAAAATGAAGAGCTGAGGGAGAA 840
|||||||||| ||||||||||||| || ||||||||| |||| ||||| |||||||||||
Sbjct 780 TCAAAGGGCAAAAGAGAATGTCAAGTACATCGAAAAGCAAAACGAAGACCTGAGGGAGAA 839
Query 841 ATTTAATGTCTCTGAAAAGAGTATCAAAGAGTTCTTTCAAAGTACTAAAGAACGGTTAGA 900
||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 840 ATTTACTGCCTCTGAAAAGAGTATCAAAGATTTCTTTCAAAGTACTAAAGAACGGTTAGA 899
Query 901 AAGTGAAGATGAAGAGCCTCTAACTGCAGGGTGCTTCTTTGCTGAACTGAGCCATGTGCT 960
||||||||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||
Sbjct 900 AAGTGAAGATGAACAGCCTCTAAATGCAATGTGCTTCTTCGCTGAACTGAGCCATGTGCT 959
Query 961 TCCAATGTCTAATGAAGTTCGCAATTGTTTTGATGCAATCATGAAGAAACTAGAACTTTC 1020
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 960 TCCAGTGTCTAATGAAGTTCGCAATTGTTTTGATGCTATCATGAAGAAACTAGAACTTTC 1019
Query 1021 TCAGAATGTGAATTTGACTGACAAAGTGGAGGGTATGGCGAAACAGATAGATCAGCACGA 1080
||||||||||||||||| ||| |||||||||||||||| |||||||||| ||||||||||
Sbjct 1020 TCAGAATGTGAATTTGATTGATAAAGTGGAGGGTATGGGGAAACAGATACATCAGCACGA 1079
Query 1081 AGATGTTGTAAAGCAACTCAAGGACGAACTGAAACAGGAGAAACTGAAGGCGAAGGAAGA 1140
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1080 AGATGTTGTAAAGCAACTCAAAGAAGAACTGAAACAGGAGAAACTGAAGGCGAAGGAAGA 1139
Query 1141 AGCAGAAGACCTTACACAAGAAATGGCTGAATTAAGGTATAAGATGACATGTTTGCTTGA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 AGCAGAAGACCTTACACAAGAAATGGCTGAATTAAGGTATAAGATGACATGTTTGCTTGA 1199
Query 1201 TGAGGAACGCAATCGCCGTGTGTGCATAGAACAAGCATCATTACAGAGAATAGCCGAGCT 1260
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1200 TGAGGAACGCAATCGCCGTGTGTGCATAGAACAAGCATCATTACAGAGAATATCCGAGCT 1259
Query 1261 AGAAGCACAGATCAAGAGAGA-GATAAAAAAGCCCT-CTTCCACTGAAATGCTGCCTCTT 1318
||||||||||||||||||||| | |||||||||| | |||||| ||||||||||||||||
Sbjct 1260 AGAAGCACAGATCAAGAGAGATG-TAAAAAAGCC-TGCTTCCAATGAAATGCTGCCTCTT 1317
Query 1319 ACTGGGTTATGAAAAAAGTCTTGAGCTTT 1347
|||||||||||||| ||||||||||||
Sbjct 1318 CCTGGGTTATGAAAA--GTCTTGAGCTTT 1344
Score = 206 bits (111), Expect = 7e-52
Identities = 159/182 (87%), Gaps = 4/182 (2%)
Strand=Plus/Plus
Query 1368 GTGCTCGAGTGATTGAAAGATGGATTGTACGTTTGGGTGGTGATTTGTATACACATCATA 1427
|||||||||||||||||||| |||||| | |||||| || ||||||||||| | |||| |
Sbjct 1412 GTGCTCGAGTGATTGAAAGACGGATTGCAAGTTTGGATGTTGATTTGTATAGAAATCAAA 1471
Query 1428 TCGTAGGGTGGTCAGAAG--ATCCAGAGACTTGGAAGAGGTTTGGAGACACAATCAAAAG 1485
| ||||||| |||||||| ||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1472 TGGTAGGGTAGTCAGAAGAAATCCAGAGACTTGGAAGAGGTTTGGAGACGCAAACAAAAG 1531
Query 1486 AGGTTTGAGTAAAGCA-TATAGCTTTAGAGATTGATGTTTTCTCTCTTTTGAGTGTACAT 1544
| ||||| || ||| | | |||||||||||||||||||||||| | || |||||||||||
Sbjct 1532 AAGTTTGGGTTAAG-AGTTTAGCTTTAGAGATTGATGTTTTCTTTATTCTGAGTGTACAT 1590
Query 1545 AA 1546
||
Sbjct 1591 AA 1592
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76304828400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5