BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487623
Length=1356
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07900.1 | Symbols: | Mitochondrial transcription terminati... 2006 0.0
> AT5G07900.1 | Symbols: | Mitochondrial transcription termination
factor family protein | chr5:2520169-2521546 FORWARD LENGTH=1378
Length=1378
Score = 2006 bits (1086), Expect = 0.0
Identities = 1272/1362 (93%), Gaps = 12/1362 (1%)
Strand=Plus/Plus
Query 1 TCTAGTAATGGCGGTCGCAGTACCTCAAGCCACTTCTCTTTCGAGGCTCTTCTTCCTCAC 60
||||||||||||||||||| |||||||||||||||||||| ||| ||| ||||||||||
Sbjct 13 TCTAGTAATGGCGGTCGCAATACCTCAAGCCACTTCTCTTACGAACCTCGTCTTCCTCAC 72
Query 61 GAAACCAATCCCTGGAGGAGGCTTCACCACTTTACTACCTAAAAATCATCGGAAA-CACA 119
|||| |||||| ||||| |||||||||| |||||||||| ||||||||||| || |
Sbjct 73 GAAATTAATCCCACGAGGAAGCTTCACCACCATACTACCTAAGCATCATCGGAAACCA-A 131
Query 120 TCTTCGTTTTCTCTGTCCAGACTCAATTTTCTTCTCCAGTAACCACACTCACCTCCAAAC 179
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 132 TCTTCGTATTCTCTCTCCAGACTCAATTTTCTTCTCCAGTAACCACACTCACCTCCAAAA 191
Query 180 ACCCTAAAGATGA-GA--AACAGCAAAAACTCTCCTTCACCATCAACTACCTTATCGACT 236
||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 192 ACCCTAAAGATGATGAGCAACAGCAAAAACTCTCCTTCACCCTCAACTACCTTATCGACT 251
Query 237 CATGTGGATTATCTCCAGATTCCGCCACCGTAGCCGCTCGTAAGCTCTTACTAGATTCAC 296
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 252 CATGTGGACTATCTCCAGATTCCGCCACCGTAGCCTCTCGTAAGCTCTTACTAGATTCAC 311
Query 297 CAGAACGACCCAACACTGTTCTAAACCTTCTTCGTGACCATGGATTCACCACTGCTCAAA 356
|||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 312 CAGAACGACCCAACACAGTTCTCAACCTTCTTCGTGACCATGGATTCACCACAGCTCAAA 371
Query 357 TCTCAACTCTCGTCAAGAAACGTCCCGTTCTCTTATTAGCCAATGCTGAATCAGTCCTCC 416
||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 372 TCTCATCTCTCGTCAAGAAACGTCCTGTTCTCTTATTAGCCAATGCTGAATCTGTCCTCC 431
Query 417 TCCCGAAACTCCTATTCTTTCTCTCAATTGGCGTCTCAAACTCATTACTTGCTCGAACCT 476
||||||||||| ||||||||||||||||| |||||||| || |||||||||||||| |
Sbjct 432 TCCCGAAACTCAGCTTCTTTCTCTCAATTGGTGTCTCAAAATCTTTACTTGCTCGAACTT 491
Query 477 TAGCTTCTGATCCAACCATTTTGACTAGATCCCTTGTTAATCAGCTTATCCCTTCTTACA 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 TAGCTTCTGATCCAACCATTTTGACTAGATCCCTTGTTAATCAGCTTATCCCTTCTTAC- 550
Query 537 AATTT-CTCAAAAGTGTTCTTGATTCAGACGAGAAGATCGTGGCGGCGTTGCGGCGGACG 595
||||| || ||||| ||||||||||| || |||||||| ||||||||||||||| |||||
Sbjct 551 AATTTCCTTAAAAGCGTTCTTGATTCCGATGAGAAGATTGTGGCGGCGTTGCGGAGGACG 610
Query 596 ACTTGGGTTTTCCTTGAGGATCACACCAAGAATCTTGTACCAAACATCAACTACATGTCG 655
|||||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||| ||
Sbjct 611 ACTTGGGTTTTCCTTGAGGATCACACTAAGAACCTTGTCCCAAACATCAACTATATGGCG 670
Query 656 GAGACTGGTGTTCCTGAGAAATGTATCAAGCTGCTTCTCACGCATTTTCCTGAAGCTGTG 715
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 GAGACTGGTGTTCCTGAGAAATGTATCAAGCTGCTTCTCACGCATTTTCCTGAAGCTGTG 730
Query 716 ATGCAGAAGAGCCATGAGTTCCAAGCAATCGCTAAGCAAGCTCAAGAGATGGGATTCAAT 775
|||||||||| |||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 731 ATGCAGAAGAACCATGAGTTCCAAGCAATTGCTAAGCAAGCTCAAGAGATGGGGTTCAAT 790
Query 776 CCTCAAAAATCAACCTTTGTTTTGGCGATTCACGCGT-TATCTGGGAAAGGAAACAAATC 834
|||||||||||||| ||||| ||||| ||||| || | | ||||||||||||||||||||
Sbjct 791 CCTCAAAAATCAACATTTGTGTTGGCCATTCATGC-TCTCTCTGGGAAAGGAAACAAATC 849
Query 835 CATATGGGACAAATGCTTTGAGGTCTACCAGAGATGGGGTTGGTCGGAAGATGATATCAT 894
|||||||||||||| |||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 850 GATATGGGACAAATGTTTTGAGGTTTATCAGAGATGGGGATGGTCGGAAGATGATATCAT 909
Query 895 GTGTGCGTTCAAGAAGCACCCTCACTGTATGATGTTGTCTGAGAGGAAGATTAACAGAAC 954
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 910 GTGTGCGTTCAAGAAGCACCCTCATTGTATGATGTTGTCTGAGAGGAAGATTAACAGAAC 969
Query 955 GATG-AAGTTTTTTGTGAATGAGATGAATTTGGCGCCTAGATCGATCGCACAGTGTCCAG 1013
|||| || | ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 970 GATGGAA-TATTTTGTGAATGAGATGAATATGGCGCCTAGATCGATCGCACAGTGTCCAG 1028
Query 1014 TGGTGCTCTTCTTCAGTCTGGAGAAGAGGATTATCCCAAGGTGTTCGGTTACTAAAGTGT 1073
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||| || |
Sbjct 1029 TGGTGCTCTTCTTCAGCCTTGAGAAGAGGATTATCCCGAGGTGTTCGGTTACTAAGGTTT 1088
Query 1074 TGGTATCGAACGGGCTTGTGAAGGAGGATTGGAGCTTGACATCATTGTTGGTTCCAGTGG 1133
|||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||
Sbjct 1089 TGGTATCGAACGGGCTTGTGAAAGAGGATTGGAGCTTGACGTCTTTGTTGGTTCCAGTGG 1148
Query 1134 AGAAAGTGTTTTTGGAGAAGCTCGTGATCAAGTACGAAGAAGAGTTGCCTGAGTTGATGG 1193
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1149 AGAAAGTGTTCTTGGAGAAGCTCGTGATCAAGTACGAAGAGGAGTTGCCTGAGTTGATGA 1208
Query 1194 ATGTGTATCTAGGATGCACCAAACTCTGAGCTTTTGTTTTCGACTGTTTTCATTATCAAA 1253
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1209 ATCTGTATCTAGGATGCACCAAACTCTGAGCTTTTGTTTTTGACTGTTTTCATTATCAAA 1268
Query 1254 TTTCAGATGCTGAGTGACATGAATCTTT-TGAAAAGAGTGTAGTGTGTAATCCAATTTTG 1312
| |||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1269 TGTCAGATGCTGAGAGACATGAATCTTTGTGAAAAGAGTCTAGTGTGTAATCCAATTTTG 1328
Query 1313 GTAGTCAAAGGAAAGCTGATTAGCAAGCCCAAAGTGTGTTTT 1354
||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1329 GTAGTGAAAGGAAAGCTGATTAGCAAGCCCAACGTGTGTTTT 1370
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66766724850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5