BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg487624
Length=1218
Score E
Sequences producing significant alignments: (Bits) Value
AT5G07910.1 | Symbols: | Leucine-rich repeat (LRR) family prot... 1786 0.0
> AT5G07910.1 | Symbols: | Leucine-rich repeat (LRR) family protein
| chr5:2521534-2524201 REVERSE LENGTH=1536
Length=1536
Score = 1786 bits (967), Expect = 0.0
Identities = 1106/1169 (95%), Gaps = 26/1169 (2%)
Strand=Plus/Plus
Query 58 TATAttttt-tctttttGGGGACGAATTTGGCTTTCTTTCTAATTCTATATAACCCGCGA 116
||||||||| | ||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 195 TATATTTTTCTGTTTTTGGGGACGAATTTGG----CTTTCT--TTCTATATAACCCGCGA 248
Query 117 --GAG--AGAGACCTTGACCCTCACCTATAAACCTC-GAAA-CAAAAATTGGCCCAAAAA 170
||| ||||||||||||||||||| |||||||| ||| |||| ||| ||| ||||
Sbjct 249 GCGAGACAGAGACCTTGACCCTCACC--TAAACCTCAAAAACCAAATTTTGACCCCAAAA 306
Query 171 GCCATCTCTTTTGGCAATCAGATTGATTACTTTGAAACTTTCTCTGGGTCTCTGAGATTT 230
|||||||||||| |||||| | ||||||||||||||||||||||||| ||||||||||
Sbjct 307 GCCATCTCTTTTAGCAATC--A--GATTACTTTGAAACTTTCTCTGGGTATCTGAGATTT 362
Query 231 ATTCTATTATTTATATCTAATTCATCTCATCAAAATCAACTGCGACGATCGGCGAAGAAT 290
||| |||||||||| ||| |||||| ||| ||||| ||||||||||||||||||||||
Sbjct 363 CTTC-ATTATTTATA--TAAATCATCTAATCGAAATCTACTGCGACGATCGGCGAAGAAT 419
Query 291 CGGAAACACAGAAATGGGGTGTTGCGCGAGCAATACAGCTGGTGGTTCAAATGCTAATCG 350
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 420 CGGAAACACAAAAATGGGGTGTTGCGCGAGCAATACAGCTGGTGGTTCAAAGGCTAATCG 479
Query 351 GATCTCTCGGTGGCGATCTACAGGCATTGTTGGTCTCCGCGACTCCAAATTGAAGACATT 410
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GATCTCACGCTGGCGATCTACAGGCATTGTTGGTCTCCGCGACTCCAAATTGAAGACATT 539
Query 411 TCCTGATGAAGTGATTGAAATGGAGAGAGCAGTGCGAACTCTTGATCTAACACACAATAA 470
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 TCCTGATGAAGTGATTGAAATGGAGAGAGCAGTGCGAACACTTGATCTAACACACAATAA 599
Query 471 GATTGCTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTGCTAATAGC 530
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 600 GATTGCTGATGTTCCTGGAGAAATCAGCAAGTTAATCAATATGCAGCGTCTGTTAATAGC 659
Query 531 TGATAATCTGGTTGAGCGCCTTCCAGGGAATCTAGGGAAACTACAATCTCTCAAAGTTTT 590
||||||||| |||||||||||||| |||||||||||||| || |||||||||||||||||
Sbjct 660 TGATAATCTAGTTGAGCGCCTTCCGGGGAATCTAGGGAAGCTTCAATCTCTCAAAGTTTT 719
Query 591 GATGCTTGATGGAAACCGCATCAGCTGTTTGCCTGATGAATTGGGTCAGTTGGTAAGGCT 650
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 720 GATGCTTGATGGAAACCGCATCAGCTGTTTGCCTGATGAATTGGGCCAGTTGGTAAGGCT 779
Query 651 TGAGCAACTTTCAATCTCAAGAAATATGCTCATATACTTGCCCGATACTATTGGTAGTCT 710
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 TGAGCAACTATCAATCTCAAGAAATATGCTCATATACTTGCCCGATACTATTGGTAGTCT 839
Query 711 CCGCAATCTAGTGCTGTTGAATGTCTCGAATAACAGATTGAAATCCCTTCCAGAATCAGT 770
|||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 840 CCGCAATCTACTGCTGTTGAATGTCTCAAATAACAGATTGAAATCCCTTCCTGAATCAGT 899
Query 771 AGGGAGCTGTGCTTCTTTAGAAGAAATACAGGCTAATGATAACGTTGTTGAAGAGCTTCC 830
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 900 AGGGAGCTGTGCTTCTTTAGAAGAAGTACAGGCTAATGATAACGTTGTTGAAGAGCTTCC 959
Query 831 TGCATCACTCTGCAATCTGATTCAGTTAAAGTCGCTTTGCTTAGACAATAATCAAGTGAA 890
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 960 TGCATCACTCTGCAATCTGATTCAGTTAAAGTCGCTTTCCTTAGACAATAATCAAGTGAA 1019
Query 891 CCAGATTCCAGATGGATTGCTGATACATTGCAAGAGTCTGCAAAATCTTTCTTTGCATAA 950
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1020 CCAGATTCCAGATGGATTGCTGATACATTGCAAGAGTCTGCAAAACCTTTCTTTGCATAA 1079
Query 951 CAATCCTATTTCCATGGATCAGTTTCAGCTGATGGAAGGATACCAAGAATTTGAAGAGAG 1010
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1080 CAATCCTATTTCCATGGATCAGTTTCAGCTGATGGAAGGATACCAAGACTTTGAAGAGAG 1139
Query 1011 GAGAAAGAAGAAATTTGATAAGCAAATCGATTCGAATGTGATGATGGGCTCTAAAGGACT 1070
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1140 GAGAAAGAAGAAATTTGATAAGCAAATCGATTCGAATGTGATGATGGGCTCTAAAGCACT 1199
Query 1071 TGATGTAGGCGTTGATAAATGAAAACTGTCTTCACATCCCCTTACTTTGTAAGTTCGGTG 1130
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1200 TGATGTAGGCGTTGATAAATGAAAACTGTCTTCACATCTCCTTACTTTGTCGGTTCGGTG 1259
Query 1131 AATGAGGATCATCGTTTCGTGTAAGAAATATTGTTGTAAAACTAtctctctctctccttc 1190
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1260 AATGAGGATCATCGTTTCGTGTAAGAAATATTGTTGTAAAACTCTCTCTCTCTCT--TTC 1317
Query 1191 tctc-tACTGCAAGATTTAGAATCTCTGT 1218
|||| | ||||||||||||||||||||||
Sbjct 1318 TCTCGT-CTGCAAGATTTAGAATCTCTGT 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839049640
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5